Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0019482

Physical Location & Seq

Genomic Coordinates Forward (+)

11597820 .. 11598907

Gene Structure 1088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG155800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAAGTAATGATGATGAAGCATACATCTACAATGATGGCAAGGATTATGGGTGGCTATGATCCGTGTCTGGATGATTATTCAAGAAAATTCTATAACAGAGCAGATGTGCAAAAGGCCCTCCATGTTAATAATGGTCCCCAGCTCAAGAACTGGAGCATCTGCAGTACCAAAATATTTCATGAGTGGGTTGATTCAAAGCCATCTGTTCTTCCTATATACAAGAAACTCATTGCAGCAGGAATGAGAATATGGGTGTACATTGGAGACACGGATGGAAGAGTTCCTGTGCTGTCCACGAGATATAGCATAAGTGCTCTGGGACTGCCTATTACAAAAGCATGGACACCGTGGTACCACCAAAAGCAGGTGAATGGGTGGTTTCAAGAATATAAGGGGCTTACATTTGCTACATTCAGAGGAGCCGACATGCAGTTCCTTGCTTCAAACCAAGCAACTCACTGGCTTTATTCACCTATTTTCTCCTTGGGGAATCTCTGCCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

169

Amino Acids

19.47

Weight (kDa)

9.49

Isoelectric Point (pI)

16.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	7 - 142	5.2e-34	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019482)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018126 RLG00000030195 RLG00000036236
rosa_multiflora	Rmu_sc0001983.1_g000005 Rmu_sc0008232.1_g000007 Rmu_sc0012304.1_g000002 Rmu_sc0015959.1_g000010
rosa_samantha	Rh7BG155800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	354
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	89
AfaI	GTAC	3 cut(s)	169, 260, 356
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	4 cut(s)	84, 198, 386, 447
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	89
Asp718I	GGTACC	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	118, 137
AsuHPI	GGTGA	2 cut(s)	382, 465
AvaII	GGWCC	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	338, 371
BanI	GGYRCC	1 cut(s)	354
BauI	CACGAG	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	3 cut(s)	31, 211, 269
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	163
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	118, 137
BmiI	GGNNCC	3 cut(s)	139, 356, 424
BmsI	GCATC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	350, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	158, 467
Bse3DI	GCAATG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	350, 486
BseGI	GGATG	2 cut(s)	79, 280
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	158, 467
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	141
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	319
BslFI	GGGAC	2 cut(s)	123, 336
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	2 cut(s)	123, 336
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	3 cut(s)	139, 356, 424
BspMAI	CTGCAG	1 cut(s)	167
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	258
BsrI	ACTGG	2 cut(s)	158, 467
BssECI	CCNNGG	2 cut(s)	350, 486
BssMI	GATC	1 cut(s)	61
BssSI	CACGAG	1 cut(s)	298
BssT1I	CCWWGG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	274
BstAUI	TGTACA	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	2 cut(s)	79, 280
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	79, 280
BtsIMutI	CAGTG	1 cut(s)	460
BveI	ACCTGC	1 cut(s)	358
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	2 cut(s)	118, 137
Csp6I	GTAC	3 cut(s)	168, 259, 355
CviAII	CATG	4 cut(s)	125, 182, 342, 430
CviJI	RGCY	7 cut(s)	57, 119, 145, 202, 400, 425, 466
CviKI_1	RGCY	7 cut(s)	57, 119, 145, 202, 400, 425, 466
CviQI	GTAC	3 cut(s)	168, 259, 355
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	4 cut(s)	128, 185, 345, 433
FaqI	GGGAC	2 cut(s)	123, 336
FatI	CATG	4 cut(s)	124, 181, 341, 429
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	2 cut(s)	86, 287
Fsp4HI	GCNGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	237
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	119
Hin1II	CATG	4 cut(s)	128, 185, 345, 433
HinfI	GANTC	2 cut(s)	194, 493
HphI	GGTGA	2 cut(s)	382, 465
Hpy166II	GTNNAC	2 cut(s)	259, 297
Hpy188I	TCNGA	1 cut(s)	419
Hpy188III	TCNNGA	5 cut(s)	71, 84, 148, 182, 386
Hpy8I	GTNNAC	2 cut(s)	259, 297
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	5 cut(s)	4, 112, 165, 236, 433
Hsp92II	CATG	4 cut(s)	128, 185, 345, 433
KpnI	GGTACC	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	156, 422
LpnPI	CCDG	8 cut(s)	56, 139, 155, 225, 300, 305, 353, 448
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	168
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	203, 291
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	1 cut(s)	89
MnlI	CCTC	2 cut(s)	131, 413
MseI	TTAA	1 cut(s)	129
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	128, 185, 345, 433
NlaIV	GGNNCC	3 cut(s)	139, 356, 424
NspI	RCATGY	1 cut(s)	433
PagI	TCATGA	1 cut(s)	181
PaqCI	CACCTGC	1 cut(s)	358
PfeI	GAWTC	2 cut(s)	194, 493
PkrI	GCNGC	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	139, 356, 424
PspPI	GGNCC	2 cut(s)	118, 137
PstI	CTGCAG	1 cut(s)	167
RsaI	GTAC	3 cut(s)	169, 260, 356
RsaNI	GTAC	3 cut(s)	168, 259, 355
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	2 cut(s)	118, 137
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	3 cut(s)	147, 372, 478
SfaNI	GCATC	1 cut(s)	168
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	89
SspI	AATATT	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	351
TasI	AATT	1 cut(s)	89
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	194, 493
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	467
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	32, 170
TspGWI	ACGGA	2 cut(s)	54, 287
TspRI	CASTG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.