RLG00000018818

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0020671
Physical Location & Seq
Forward (+)
36950368 .. 36950991
624 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018818

Sequence Viewer

Length: 624 bp
ATGGGGCAAGGAGATCCTCACTATATCTTCTCCTGCATGTTATTTAAGTCTGATGGGATTCCTTGCTCTTATATTTTTTGTGTGATGAAATACAAGCAAATTGAGGTCTTACCAGACTCGTTAATCCATGAGCGGTGGACCAAGAGTGCTAGGGATAAACATAAGGATGTGGCATCAATGAACCAAGGTTCAGATAAAACCATGCAAATTGGCAGGTGTGTGGCTTTGCACTCAATTTGCAATAGTATATCTTATGATGGGTCGCTAACTGGAGAAGTGTTCAAAGTTATTATGAATGAACTCACTAGAGTGAAATTAATGGCTGAGAAATACAAGGTTCAACACGTTGAAACAAGCATGCACATCAATAGTCAAAACTATGAAAATGTAGTAAGAGACCCGGTAATCCACACGACCAAGAAAGCAAAGCATGGGAAAGAGAACCATAATGCTGAGGAGGAACCTATGAGAGTCGAAAGGCATTGTTCATATTGCAAAGGAAGAGGGTATAACTCTAGAACATGTGAAAAGAAGGCAGCTGATCTGGTTGCTGAAAAGGCTATAGCAGCACAGGCCCTTTCACAATCCTCCACTGCATGCCGTACTTATGACTTTATGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

208

Amino Acids

23.57

Weight (kDa)

8.66

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020671)

Species Orthologous Gene IDs
rosa_laevigata RLG00000018818
rosa_multiflora Rmu_sc0002091.1_g000003
rosa_roxburghii Rroxscaffold_2G00123750
rosa_rugosa Rorug05G0555000
rosa_samantha Rh2AG039300 Rh2CG318600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 204
AccBSI CCGCTC 1 cut(s) 133
AciI CCGC 1 cut(s) 133
AclWI GGATC 1 cut(s) 8
AfaI GTAC 1 cut(s) 604
AflIII ACRYGT 2 cut(s) 343, 521
AgsI TTSAA 3 cut(s) 283, 341, 350
AleI CACNNNNGTG 1 cut(s) 308
AluBI AGCT 1 cut(s) 539
AluI AGCT 1 cut(s) 539
Alw26I GTCTC 1 cut(s) 390
AlwI GGATC 1 cut(s) 8
AoxI GGCC 1 cut(s) 573
ApeKI GCWGC 2 cut(s) 536, 566
AseI ATTAAT 1 cut(s) 317
AspS9I GGNCC 2 cut(s) 138, 574
AsuC2I CCSGG 1 cut(s) 401
AvaII GGWCC 1 cut(s) 138
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 548, 578
BccI CCATC 2 cut(s) 47, 251
BceAI ACGGC 1 cut(s) 585
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 3 cut(s) 150, 306, 516
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 204
BisI GCNGC 2 cut(s) 537, 567
BlsI GCNGC 2 cut(s) 538, 568
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 138
BmgT120I GGNCC 2 cut(s) 138, 574
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 401
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 315, 444
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 470
BseXI GCAGC 2 cut(s) 548, 578
BshFI GGCC 1 cut(s) 575
BsiSI CCGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 390
BsnI GGCC 1 cut(s) 575
Bso31I GGTCTC 1 cut(s) 390
Bsp143I GATC 2 cut(s) 13, 541
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 2 cut(s) 316, 445
BspLI GGNNCC 1 cut(s) 462
BspMI ACCTGC 1 cut(s) 204
BspPI GGATC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 390
BsrBI CCGCTC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 274
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 2 cut(s) 13, 541
BssT1I CCWWGG 1 cut(s) 184
Bst6I CTCTTC 1 cut(s) 496
BstC8I GCNNGC 2 cut(s) 359, 598
BstDEI CTNAG 2 cut(s) 324, 453
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 2 cut(s) 16, 544
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 2 cut(s) 13, 541
BstMWI GCNNNNNNNGC 3 cut(s) 557, 566, 572
BstNSI RCATGY 4 cut(s) 40, 361, 525, 600
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 2 cut(s) 548, 578
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BsuRI GGCC 1 cut(s) 575
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 2 cut(s) 359, 598
Cfr13I GGNCC 2 cut(s) 138, 574
Csp6I GTAC 1 cut(s) 603
CviAII CATG 7 cut(s) 37, 128, 202, 358, 431, 522, 597
CviJI RGCY 5 cut(s) 224, 323, 539, 560, 575
CviKI_1 RGCY 5 cut(s) 224, 323, 539, 560, 575
CviQI GTAC 1 cut(s) 603
DdeI CTNAG 2 cut(s) 324, 453
DpnI GATC 2 cut(s) 15, 543
DpnII GATC 2 cut(s) 13, 541
Eam1104I CTCTTC 1 cut(s) 496
EarI CTCTTC 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 184
Eco31I GGTCTC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 138
EcoO109I RGGNCCY 1 cut(s) 574
EcoT14I CCWWGG 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 7 cut(s) 40, 131, 205, 361, 434, 525, 600
FatI CATG 7 cut(s) 36, 127, 201, 357, 430, 521, 596
Fnu4HI GCNGC 2 cut(s) 537, 567
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 537, 567
FspBI CTAG 3 cut(s) 150, 306, 516
GluI GCNGC 2 cut(s) 537, 567
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 575
HapII CCGG 1 cut(s) 401
Hin1II CATG 7 cut(s) 40, 131, 205, 361, 434, 525, 600
HinfI GANTC 3 cut(s) 58, 116, 471
HpaII CCGG 1 cut(s) 401
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 52, 193
Hpy188III TCNNGA 1 cut(s) 516
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 526
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 7 cut(s) 36, 205, 229, 240, 361, 495, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 557, 566, 572
HpyF3I CTNAG 2 cut(s) 324, 453
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 7 cut(s) 40, 131, 205, 361, 434, 525, 600
Kzo9I GATC 2 cut(s) 13, 541
LpnPI CCDG 7 cut(s) 46, 126, 199, 255, 414, 530, 557
Lsp1109I GCAGC 2 cut(s) 548, 578
LweI GCATC 1 cut(s) 182
MaeI CTAG 3 cut(s) 150, 306, 516
MaeII ACGT 1 cut(s) 345
MalI GATC 2 cut(s) 15, 543
MbiI CCGCTC 1 cut(s) 133
MboI GATC 2 cut(s) 13, 541
MboII GAAGA 2 cut(s) 19, 513
MflI RGATCY 1 cut(s) 13
MluCI AATT 4 cut(s) 99, 207, 234, 314
MlyI GAGTC 2 cut(s) 110, 480
MnlI CCTC 6 cut(s) 27, 97, 448, 451, 497, 598
MseI TTAA 3 cut(s) 45, 122, 317
MslI CAYNNNNRTG 2 cut(s) 165, 308
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 1 cut(s) 401
MspR9I CCNGG 1 cut(s) 401
MwoI GCNNNNNNNGC 3 cut(s) 557, 566, 572
NciI CCSGG 1 cut(s) 401
NdeII GATC 2 cut(s) 13, 541
NlaIII CATG 7 cut(s) 40, 131, 205, 361, 434, 525, 600
NlaIV GGNNCC 1 cut(s) 462
NspI RCATGY 4 cut(s) 40, 361, 525, 600
OliI CACNNNNGTG 1 cut(s) 308
PaeI GCATGC 2 cut(s) 361, 600
PaqCI CACCTGC 1 cut(s) 204
PciI ACATGT 1 cut(s) 521
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 2 cut(s) 538, 568
PleI GAGTC 2 cut(s) 110, 479
PpsI GAGTC 2 cut(s) 110, 479
PscI ACATGT 1 cut(s) 521
PshBI ATTAAT 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 2 cut(s) 138, 574
PsuI RGATCY 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 1 cut(s) 604
RsaNI GTAC 1 cut(s) 603
RseI CAYNNNNRTG 2 cut(s) 165, 308
SaqAI TTAA 3 cut(s) 45, 122, 317
SatI GCNGC 2 cut(s) 537, 567
Sau3AI GATC 2 cut(s) 13, 541
Sau96I GGNCC 2 cut(s) 138, 574
SchI GAGTC 2 cut(s) 110, 480
ScrFI CCNGG 1 cut(s) 401
SetI ASST 7 cut(s) 108, 190, 218, 339, 348, 466, 541
SfaNI GCATC 1 cut(s) 182
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 1 cut(s) 138
SmiMI CAYNNNNRTG 2 cut(s) 165, 308
SphI GCATGC 2 cut(s) 361, 600
Sse9I AATT 4 cut(s) 99, 207, 234, 314
SsiI CCGC 1 cut(s) 133
SspMI CTAG 3 cut(s) 150, 306, 516
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 184
TaiI ACGT 1 cut(s) 348
TaqI TCGA 1 cut(s) 474
TasI AATT 4 cut(s) 99, 207, 234, 314
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 3 cut(s) 45, 122, 317
Tru9I TTAA 3 cut(s) 45, 122, 317
TscAI CASTG 1 cut(s) 598
TseI GCWGC 2 cut(s) 536, 566
TspDTI ATGAA 6 cut(s) 101, 194, 308, 312, 396, 477
TspRI CASTG 1 cut(s) 598
VpaK11BI GGWCC 1 cut(s) 138
VspI ATTAAT 1 cut(s) 317
XbaI TCTAGA 1 cut(s) 515
XceI RCATGY 4 cut(s) 40, 361, 525, 600
XspI CTAG 3 cut(s) 150, 306, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.