Rh2CG318600

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0020671
Physical Location & Seq
Reverse (-)
40754652 .. 40755134
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG318600.1

Sequence Viewer

Length: 483 bp
ATGAGTGCTAGAGACAAACATAAGGATGCGGCACTGCTGAATGAAGGTCCAGATAAAACCATGCAGATTGGCAGGTGTGCGGCTTTGCACTCAATTTGCAATAGTATATCTTATGATGGGTCACTTACTGGAGAAGGGTTCAGAGTCATTATGAATGAACTCACTAGAGTGAAACTAATGGCCGAGAAGTACATGGTTCAACACTCTGAAACAAGCCTGCACATCAGTAGTCAAAACCATGAAAATGTAGTAAGAGACCCAGAAATCCACATGTCCAAGAAAGCAAAACATGGGGAAGAGAACCATAATGCTGAGGAGGAACCTACAAGAGTCGAAAGGCATTGTTCTTATTGCAAAGGAGGAGGGCATAACTCTAGAACATGTGACAAGAAAGCAGCTAACCTGGTTGCTGAAAAGGCTACAGCAGCACAGACCCTTTCACAATCCTCGACCGCAGGCCGTACGTATGACTTTATGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

160

Amino Acids

17.78

Weight (kDa)

7.15

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020671)

Species Orthologous Gene IDs
rosa_laevigata RLG00000018818
rosa_multiflora Rmu_sc0002091.1_g000003
rosa_roxburghii Rroxscaffold_2G00123750
rosa_rugosa Rorug05G0555000
rosa_samantha Rh2AG039300 Rh2CG318600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 63
Acc36I ACCTGC 1 cut(s) 63
AciI CCGC 3 cut(s) 29, 80, 453
AcoI YGGCCR 1 cut(s) 180
AfaI GTAC 2 cut(s) 191, 463
AflIII ACRYGT 2 cut(s) 270, 380
AgsI TTSAA 1 cut(s) 200
AjnI CCWGG 1 cut(s) 402
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 1 cut(s) 398
AluI AGCT 1 cut(s) 398
Alw26I GTCTC 2 cut(s) 6, 249
AoxI GGCC 2 cut(s) 180, 457
ApeKI GCWGC 2 cut(s) 395, 425
AspS9I GGNCC 1 cut(s) 47
AvaII GGWCC 1 cut(s) 47
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 407, 437
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 444
BciT130I CCWGG 1 cut(s) 404
BcoDI GTCTC 2 cut(s) 6, 249
BfaI CTAG 3 cut(s) 9, 165, 375
BfmI CTRYAG 1 cut(s) 420
BfuAI ACCTGC 1 cut(s) 63
BisI GCNGC 4 cut(s) 30, 81, 396, 426
BlsI GCNGC 4 cut(s) 31, 82, 397, 427
Bme1390I CCNGG 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 404
BseGI GGATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 303
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 329, 375
BseXI GCAGC 2 cut(s) 407, 437
BsgI GTGCAG 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 2 cut(s) 182, 459
BsiEI CGRYCG 1 cut(s) 453
BsiWI CGTACG 1 cut(s) 461
BsmAI GTCTC 2 cut(s) 6, 249
BsnI GGCC 2 cut(s) 182, 459
Bso31I GGTCTC 1 cut(s) 249
BspACI CCGC 3 cut(s) 29, 80, 453
BspANI GGCC 2 cut(s) 182, 459
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 321
BspMI ACCTGC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 404
Bst6I CTCTTC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 218, 457
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 31
BstMAI GTCTC 2 cut(s) 6, 249
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 2 cut(s) 416, 425
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 2 cut(s) 274, 384
BstSCI CCNGG 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 420
BstSNI TACGTA 1 cut(s) 465
BstV1I GCAGC 2 cut(s) 407, 437
BsuRI GGCC 2 cut(s) 182, 459
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 2 cut(s) 218, 457
Cfr13I GGNCC 1 cut(s) 47
CsiI ACCWGGT 1 cut(s) 402
Csp6I GTAC 2 cut(s) 190, 462
CviAII CATG 6 cut(s) 61, 193, 239, 271, 290, 381
CviJI RGCY 6 cut(s) 83, 182, 216, 398, 419, 459
CviKI_1 RGCY 6 cut(s) 83, 182, 216, 398, 419, 459
CviQI GTAC 2 cut(s) 190, 462
DdeI CTNAG 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco105I TACGTA 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 402
FaeI CATG 6 cut(s) 64, 196, 242, 274, 293, 384
FatI CATG 6 cut(s) 60, 192, 238, 270, 289, 380
Fnu4HI GCNGC 4 cut(s) 30, 81, 396, 426
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 4 cut(s) 30, 81, 396, 426
FspBI CTAG 3 cut(s) 9, 165, 375
GluI GCNGC 4 cut(s) 30, 81, 396, 426
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 182, 459
Hin1II CATG 6 cut(s) 64, 196, 242, 274, 293, 384
HinfI GANTC 2 cut(s) 144, 330
Hpy188I TCNGA 2 cut(s) 143, 208
Hpy188III TCNNGA 2 cut(s) 50, 375
HpyAV CCTTC 2 cut(s) 38, 128
HpyCH4IV ACGT 1 cut(s) 464
HpyCH4V TGCA 5 cut(s) 64, 88, 99, 220, 354
HpyF10VI GCNNNNNNNGC 2 cut(s) 416, 425
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 1 cut(s) 464
Hsp92II CATG 6 cut(s) 64, 196, 242, 274, 293, 384
LpnPI CCDG 8 cut(s) 58, 63, 114, 230, 273, 389, 416, 441
Lsp1109I GCAGC 2 cut(s) 407, 437
LweI GCATC 1 cut(s) 16
MabI ACCWGGT 1 cut(s) 402
MaeI CTAG 3 cut(s) 9, 165, 375
MaeII ACGT 1 cut(s) 464
MaeIII GTNAC 2 cut(s) 120, 383
MboII GAAGA 1 cut(s) 308
MluCI AATT 1 cut(s) 93
MlyI GAGTC 2 cut(s) 153, 339
MnlI CCTC 5 cut(s) 307, 310, 353, 356, 457
MslI CAYNNNNRTG 3 cut(s) 24, 167, 243
MspR9I CCNGG 1 cut(s) 404
MvaI CCWGG 1 cut(s) 404
MwoI GCNNNNNNNGC 2 cut(s) 416, 425
NlaIII CATG 6 cut(s) 64, 196, 242, 274, 293, 384
NlaIV GGNNCC 1 cut(s) 321
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 2 cut(s) 120, 383
NspI RCATGY 2 cut(s) 274, 384
OliI CACNNNNGTG 1 cut(s) 167
PaqCI CACCTGC 1 cut(s) 63
PciI ACATGT 2 cut(s) 270, 380
Pfl23II CGTACG 1 cut(s) 461
PkrI GCNGC 4 cut(s) 31, 82, 397, 427
PleI GAGTC 2 cut(s) 152, 338
PpsI GAGTC 2 cut(s) 152, 338
Ppu21I YACGTR 1 cut(s) 465
PscI ACATGT 2 cut(s) 270, 380
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspLI CGTACG 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 321
PspPI GGNCC 1 cut(s) 47
RsaI GTAC 2 cut(s) 191, 463
RsaNI GTAC 2 cut(s) 190, 462
RseI CAYNNNNRTG 3 cut(s) 24, 167, 243
SatI GCNGC 4 cut(s) 30, 81, 396, 426
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 2 cut(s) 153, 339
ScrFI CCNGG 1 cut(s) 404
SetI ASST 6 cut(s) 49, 77, 325, 400, 405, 467
SexAI ACCWGGT 1 cut(s) 402
SfaNI GCATC 1 cut(s) 16
SfcI CTRYAG 1 cut(s) 420
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 3 cut(s) 24, 167, 243
SnaBI TACGTA 1 cut(s) 465
Sse9I AATT 1 cut(s) 93
SsiI CCGC 3 cut(s) 29, 80, 453
SspMI CTAG 3 cut(s) 9, 165, 375
StyD4I CCNGG 1 cut(s) 402
TaiI ACGT 1 cut(s) 467
TaqI TCGA 2 cut(s) 333, 449
TasI AATT 1 cut(s) 93
TatI WGTACW 1 cut(s) 189
TauI GCSGC 2 cut(s) 32, 83
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 2 cut(s) 120, 383
TseI GCWGC 2 cut(s) 395, 425
Tsp45I GTSAC 2 cut(s) 120, 383
TspDTI ATGAA 4 cut(s) 57, 167, 171, 255
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 47
XbaI TCTAGA 1 cut(s) 374
XceI RCATGY 2 cut(s) 274, 384
XspI CTAG 3 cut(s) 9, 165, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.