Rroxscaffold_2G00123750

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0020671
Physical Location & Seq
Forward (+)
57638965 .. 57640364
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123750.1

Sequence Viewer

Length: 369 bp
ATGACTACATTGTCGGCACTAGTTGTGGATTTGAGTTTGTTGGATATACTTCCAAGGATGTTCAATAAGATTGATGCTGACCGAAGAGCAAAGCTTATTGATGGAGATGCACATGCTGCAATTGCTTATATGAATACGAAGGCCATAGAAGATCCGGGTTTATGTTACAAGAGCAAATGGAGGTCTTACCGAGACTCATTGATCCATGAGCATTGGACCAAGAGTCCTAGAGATAAACATAAGGATGTTGCACCGTTGAATCGGGGTTTAGATAAAATCATGCAAATTGGCAGGTGTGTGGCTCTGCATTCAATTTGTAACAGTATATCTTACAATGGGTCACCGATTGGAGAGGGGTTCGAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

122

Amino Acids

13.7

Weight (kDa)

8.47

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020671)

Species Orthologous Gene IDs
rosa_laevigata RLG00000018818
rosa_multiflora Rmu_sc0002091.1_g000003
rosa_roxburghii Rroxscaffold_2G00123750
rosa_rugosa Rorug05G0555000
rosa_samantha Rh2AG039300 Rh2CG318600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 282
AasI GACNNNNNNGTC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 282
AclWI GGATC 2 cut(s) 146, 196
AgsI TTSAA 3 cut(s) 64, 259, 312
AhdI GACNNNNNGTC 1 cut(s) 222
AhlI ACTAGT 1 cut(s) 19
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 2 cut(s) 146, 196
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 116
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 333
AvaII GGWCC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 103
BccI CCATC 1 cut(s) 95
BcnI CCSGG 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 186
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 2 cut(s) 20, 228
BfuAI ACCTGC 1 cut(s) 282
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 216
BmeRI GACNNNNNGTC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 156
BmsI GCATC 2 cut(s) 64, 97
BpuMI CCSGG 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 63, 250
BseXI GCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 143
BsiSI CCGG 1 cut(s) 155
BsmAI GTCTC 1 cut(s) 186
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 151, 201
BspANI GGCC 1 cut(s) 143
BspMI ACCTGC 1 cut(s) 282
BspPI GGATC 2 cut(s) 146, 196
BspQI GCTCTTC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 2 cut(s) 151, 201
BssT1I CCWWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 255, 323
Bst6I CTCTTC 1 cut(s) 79
BstAPI GCANNNNNTGC 1 cut(s) 116
BstEII GGTNACC 1 cut(s) 339
BstF5I GGATG 2 cut(s) 63, 250
BstKTI GATC 2 cut(s) 154, 204
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 2 cut(s) 151, 201
BstMWI GCNNNNNNNGC 2 cut(s) 116, 122
BstNSI RCATGY 1 cut(s) 116
BstPI GGTNACC 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 103
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 2 cut(s) 63, 250
BveI ACCTGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 216
CviAII CATG 3 cut(s) 113, 206, 280
CviJI RGCY 3 cut(s) 94, 143, 302
CviKI_1 RGCY 3 cut(s) 94, 143, 302
DpnI GATC 2 cut(s) 153, 203
DpnII GATC 2 cut(s) 151, 201
DrdI GACNNNNNNGTC 1 cut(s) 10
DriI GACNNNNNGTC 1 cut(s) 222
DseDI GACNNNNNNGTC 1 cut(s) 10
Eam1104I CTCTTC 1 cut(s) 79
Eam1105I GACNNNNNGTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 339
EcoO65I GGTNACC 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 3 cut(s) 116, 209, 283
FatI CATG 3 cut(s) 112, 205, 279
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 70, 257
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 2 cut(s) 20, 228
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 155
Hin1II CATG 3 cut(s) 116, 209, 283
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 4 cut(s) 194, 223, 259, 362
HpaII CCGG 1 cut(s) 155
HphI GGTGA 1 cut(s) 333
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 2 cut(s) 255, 323
HpyCH4V TGCA 5 cut(s) 110, 119, 251, 283, 307
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 122
Hsp92II CATG 3 cut(s) 116, 209, 283
Kzo9I GATC 2 cut(s) 151, 201
LguI GCTCTTC 1 cut(s) 79
LpnPI CCDG 2 cut(s) 168, 277
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 64, 97
MaeI CTAG 2 cut(s) 20, 228
MaeIII GTNAC 3 cut(s) 164, 317, 339
MalI GATC 2 cut(s) 153, 203
MboI GATC 2 cut(s) 151, 201
MboII GAAGA 2 cut(s) 96, 161
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 151
MluCI AATT 3 cut(s) 120, 285, 312
MlyI GAGTC 2 cut(s) 188, 232
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 2 cut(s) 174, 346
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 156
MunI CAATTG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 116, 122
NciI CCSGG 1 cut(s) 156
NdeII GATC 2 cut(s) 151, 201
NlaIII CATG 3 cut(s) 116, 209, 283
NmuCI GTSAC 1 cut(s) 339
NspI RCATGY 1 cut(s) 116
PaqCI CACCTGC 1 cut(s) 282
PciSI GCTCTTC 1 cut(s) 79
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 2 cut(s) 188, 231
PpsI GAGTC 2 cut(s) 188, 231
PspEI GGTNACC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 216
PsuI RGATCY 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 79
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 2 cut(s) 151, 201
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 2 cut(s) 188, 232
ScrFI CCNGG 1 cut(s) 156
SetI ASST 3 cut(s) 96, 185, 296
SfaNI GCATC 2 cut(s) 64, 97
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 243
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 3 cut(s) 120, 285, 312
SspMI CTAG 2 cut(s) 20, 228
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 255, 323
TaqI TCGA 1 cut(s) 360
TaqII GACCGA 1 cut(s) 96
TasI AATT 3 cut(s) 120, 285, 312
TfiI GAWTC 1 cut(s) 259
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 216
XceI RCATGY 1 cut(s) 116
XspI CTAG 2 cut(s) 20, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.