Rh2AG039300

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0020671
Physical Location & Seq
Reverse (-)
3105124 .. 3106038
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG039300.1

Sequence Viewer

Length: 915 bp
ATGTTTGAGATTCTACCCCGGATTGGCAGAACAGTAAGTCGGATGAGGAATGACGTCATTAAGGACGATTATAATTGCAGGAACTCAAAGCCGGTCCTCACCACTCACATGCAAGCATTGGAGGACAAGCTTGGTAAGAAGCTAACCCATGACATGTATTTGGTGGCTAGAATTCAGATTAAGCGTGAGAAAAATTATTTTGTGACAAATATGATCTCATTTTCTGGTTCAAGTGTGTTCTATGTGATGAAGTATAAACAACCGCAATTGGTATGGAATGTGGAGGTCAGGATGGGGCAAGGAGATCCTCACTATCTCTGCTCCTGCATGTTATTTGAGTCTGATGGGATTCCTTGCTCTCATATTTTTTGTGTGATGAAGTACAAGCAGATTGAGGTCCTACCAGACTCCTTAATTCATGAGCGGTGGACCATGAGTGCTAGAGACAAACATAAGGATGCGGCACTGCTGAATGAAGGTCCAGATAAAACCATGCAGATTGGCAGGTGTGCGGCTTTGCACTCAATTTGCAATAGTATATCTTATGATGGGTCACTTACTGGAGAAGGGTTCAGAGTCATTATGAATGAACTCACTAGAGTGAAACTAATGGCCGAGAAGTACAGGGTTCAACACTCTGAAACAAGCCTGCACATCAGTAGTCAAAACCATGAAAATGTAGTAAGAGACCCAGAAATCCACACGTCCAAGAAAGCAAAACATGGGGAAGAGAACCATAATGCTGAGGAGGAACCTACAAGAGTCGAAAGGCATTGTTCTTATTGCAAAGGAGGCGGGCATAACTCTAGAACATGTGACAAGAAAGCAGCTAACCTGGTTGCTGAAAAGGCTACAGCAGCACAGACCCTTTCACAATCCTCGACCGCAGGCCGTACGTATGACTTTATGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

304

Amino Acids

34.76

Weight (kDa)

8.71

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020671)

Species Orthologous Gene IDs
rosa_laevigata RLG00000018818
rosa_multiflora Rmu_sc0002091.1_g000003
rosa_roxburghii Rroxscaffold_2G00123750
rosa_rugosa Rorug05G0555000
rosa_samantha Rh2AG039300 Rh2CG318600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 72
AarI CACCTGC 1 cut(s) 495
AatII GACGTC 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 495
AccBSI CCGCTC 1 cut(s) 424
AciI CCGC 6 cut(s) 263, 424, 461, 512, 795, 885
AclWI GGATC 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 3 cut(s) 383, 623, 895
AfiI CCNNNNNNNGG 1 cut(s) 23
AflIII ACRYGT 3 cut(s) 153, 702, 812
AgsI TTSAA 2 cut(s) 231, 632
AjiI CACGTC 1 cut(s) 705
AjnI CCWGG 1 cut(s) 834
AleI CACNNNNGTG 1 cut(s) 599
AluBI AGCT 3 cut(s) 130, 142, 830
AluI AGCT 3 cut(s) 130, 142, 830
Alw26I GTCTC 2 cut(s) 438, 681
AlwI GGATC 1 cut(s) 299
AoxI GGCC 2 cut(s) 612, 889
ApeKI GCWGC 2 cut(s) 827, 857
ApoI RAATTY 1 cut(s) 171
AspS9I GGNCC 4 cut(s) 94, 397, 429, 479
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 4 cut(s) 94, 397, 429, 479
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 2 cut(s) 839, 869
BccI CCATC 3 cut(s) 286, 338, 542
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 1 cut(s) 836
BcnI CCSGG 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 438, 681
BfaI CTAG 4 cut(s) 168, 441, 597, 807
BfmI CTRYAG 1 cut(s) 852
BfuAI ACCTGC 1 cut(s) 495
BisI GCNGC 4 cut(s) 462, 513, 828, 858
BlsI GCNGC 4 cut(s) 463, 514, 829, 859
Bme1390I CCNGG 2 cut(s) 19, 836
Bme18I GGWCC 4 cut(s) 94, 397, 429, 479
BmgBI CACGTC 1 cut(s) 705
BmgT120I GGNCC 4 cut(s) 94, 397, 429, 479
BmiI GGNNCC 1 cut(s) 753
BmrFI CCNGG 2 cut(s) 19, 836
BmsI GCATC 1 cut(s) 448
BpmI CTGGAG 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 744
BpuMI CCSGG 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 897
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 681
BsaJI CCNNGG 1 cut(s) 17
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 565
BseBI CCWGG 1 cut(s) 836
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 3 cut(s) 48, 297, 463
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 735
BseNI ACTGG 1 cut(s) 565
BseRI GAGGAG 1 cut(s) 761
BseXI GCAGC 2 cut(s) 839, 869
BsgI GTGCAG 1 cut(s) 635
Bsh1285I CGRYCG 1 cut(s) 885
BshFI GGCC 2 cut(s) 614, 891
BsiEI CGRYCG 1 cut(s) 885
BsiSI CCGG 2 cut(s) 19, 92
BsiWI CGTACG 1 cut(s) 893
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 438, 681
BsnI GGCC 2 cut(s) 614, 891
Bso31I GGTCTC 1 cut(s) 681
Bsp143I GATC 2 cut(s) 213, 304
BspACI CCGC 6 cut(s) 263, 424, 461, 512, 795, 885
BspANI GGCC 2 cut(s) 614, 891
BspCNI CTCAG 1 cut(s) 736
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 753
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 681
BsrBI CCGCTC 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 1 cut(s) 565
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 2 cut(s) 213, 304
BssNI GRCGYC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 836
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 723
BstACI GRCGYC 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 897
BstC8I GCNNGC 4 cut(s) 114, 650, 797, 889
BstDEI CTNAG 1 cut(s) 744
BstF5I GGATG 3 cut(s) 48, 297, 463
BstKTI GATC 2 cut(s) 216, 307
BstMAI GTCTC 2 cut(s) 438, 681
BstMBI GATC 2 cut(s) 213, 304
BstMCI CGRYCG 1 cut(s) 885
BstMWI GCNNNNNNNGC 3 cut(s) 792, 848, 857
BstNI CCWGG 1 cut(s) 836
BstNSI RCATGY 4 cut(s) 112, 157, 331, 816
BstSCI CCNGG 2 cut(s) 17, 834
BstSFI CTRYAG 1 cut(s) 852
BstSNI TACGTA 1 cut(s) 897
BstV1I GCAGC 2 cut(s) 839, 869
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 2 cut(s) 614, 891
BtrI CACGTC 1 cut(s) 705
BtsCI GGATG 3 cut(s) 48, 297, 463
BtsI GCAGTG 1 cut(s) 464
BtsIMutI CAGTG 1 cut(s) 464
BveI ACCTGC 1 cut(s) 495
Cac8I GCNNGC 4 cut(s) 114, 650, 797, 889
CciI TCATGA 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 4 cut(s) 94, 397, 429, 479
CsiI ACCWGGT 1 cut(s) 834
Csp6I GTAC 3 cut(s) 382, 622, 894
CviQI GTAC 3 cut(s) 382, 622, 894
DdeI CTNAG 1 cut(s) 744
DpnI GATC 2 cut(s) 215, 306
DpnII GATC 2 cut(s) 213, 304
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 1 cut(s) 723
EarI CTCTTC 1 cut(s) 723
Eco105I TACGTA 1 cut(s) 897
Eco31I GGTCTC 1 cut(s) 681
Eco47I GGWCC 4 cut(s) 94, 397, 429, 479
EcoO109I RGGNCCY 1 cut(s) 397
EcoRI GAATTC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 834
FauI CCCGC 1 cut(s) 788
Fnu4HI GCNGC 4 cut(s) 462, 513, 828, 858
FokI GGATG 3 cut(s) 55, 304, 470
Fsp4HI GCNGC 4 cut(s) 462, 513, 828, 858
FspBI CTAG 4 cut(s) 168, 441, 597, 807
GluI GCNGC 4 cut(s) 462, 513, 828, 858
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 2 cut(s) 614, 891
HapII CCGG 2 cut(s) 19, 92
Hin1I GRCGYC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 6 cut(s) 10, 338, 349, 407, 576, 762
HpaII CCGG 2 cut(s) 19, 92
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 5 cut(s) 42, 177, 343, 575, 640
Hpy188III TCNNGA 4 cut(s) 289, 419, 482, 807
Hpy8I GTNNAC 1 cut(s) 429
HpyAV CCTTC 2 cut(s) 470, 560
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 3 cut(s) 54, 704, 896
HpyCH4V TGCA 8 cut(s) 78, 112, 327, 496, 520, 531, 652, 786
HpyF10VI GCNNNNNNNGC 3 cut(s) 792, 848, 857
HpyF3I CTNAG 1 cut(s) 744
HpySE526I ACGT 3 cut(s) 54, 704, 896
Hsp92I GRCGYC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 213, 304
LmnI GCTCC 1 cut(s) 326
Lsp1109I GCAGC 2 cut(s) 839, 869
LweI GCATC 1 cut(s) 448
MabI ACCWGGT 1 cut(s) 834
MaeI CTAG 4 cut(s) 168, 441, 597, 807
MaeII ACGT 3 cut(s) 54, 704, 896
MaeIII GTNAC 3 cut(s) 202, 552, 815
MalI GATC 2 cut(s) 215, 306
MbiI CCGCTC 1 cut(s) 424
MboI GATC 2 cut(s) 213, 304
MboII GAAGA 1 cut(s) 740
MfeI CAATTG 1 cut(s) 266
MflI RGATCY 1 cut(s) 304
MluCI AATT 6 cut(s) 73, 171, 193, 266, 414, 525
MlyI GAGTC 4 cut(s) 347, 401, 585, 771
MmeI TCCRAC 1 cut(s) 20
MseI TTAA 3 cut(s) 60, 180, 413
MslI CAYNNNNRTG 4 cut(s) 107, 456, 599, 675
MspI CCGG 2 cut(s) 19, 92
MspR9I CCNGG 2 cut(s) 19, 836
MunI CAATTG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 836
MwoI GCNNNNNNNGC 3 cut(s) 792, 848, 857
NciI CCSGG 1 cut(s) 19
NdeII GATC 2 cut(s) 213, 304
NlaIV GGNNCC 1 cut(s) 753
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 3 cut(s) 202, 552, 815
NspI RCATGY 4 cut(s) 112, 157, 331, 816
OliI CACNNNNGTG 1 cut(s) 599
PagI TCATGA 1 cut(s) 418
PaqCI CACCTGC 1 cut(s) 495
PciI ACATGT 2 cut(s) 153, 812
PfeI GAWTC 2 cut(s) 10, 349
Pfl23II CGTACG 1 cut(s) 893
PkrI GCNGC 4 cut(s) 463, 514, 829, 859
PleI GAGTC 4 cut(s) 346, 401, 584, 770
PpsI GAGTC 4 cut(s) 346, 401, 584, 770
Ppu21I YACGTR 1 cut(s) 897
PpuMI RGGWCCY 1 cut(s) 397
PscI ACATGT 2 cut(s) 153, 812
PsiI TTATAA 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 834
PspGI CCWGG 1 cut(s) 834
PspLI CGTACG 1 cut(s) 893
PspN4I GGNNCC 1 cut(s) 753
PspPI GGNCC 4 cut(s) 94, 397, 429, 479
PspPPI RGGWCCY 1 cut(s) 397
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 3 cut(s) 383, 623, 895
RsaNI GTAC 3 cut(s) 382, 622, 894
RseI CAYNNNNRTG 4 cut(s) 107, 456, 599, 675
SaqAI TTAA 3 cut(s) 60, 180, 413
SatI GCNGC 4 cut(s) 462, 513, 828, 858
Sau3AI GATC 2 cut(s) 213, 304
Sau96I GGNCC 4 cut(s) 94, 397, 429, 479
SchI GAGTC 4 cut(s) 347, 401, 585, 771
ScrFI CCNGG 2 cut(s) 19, 836
SexAI ACCWGGT 1 cut(s) 834
SfaNI GCATC 1 cut(s) 448
SfcI CTRYAG 1 cut(s) 852
SinI GGWCC 4 cut(s) 94, 397, 429, 479
SmiMI CAYNNNNRTG 4 cut(s) 107, 456, 599, 675
SnaBI TACGTA 1 cut(s) 897
Sse9I AATT 6 cut(s) 73, 171, 193, 266, 414, 525
SsiI CCGC 6 cut(s) 263, 424, 461, 512, 795, 885
SspMI CTAG 4 cut(s) 168, 441, 597, 807
StyD4I CCNGG 2 cut(s) 17, 834
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 3 cut(s) 57, 707, 899
TaqI TCGA 2 cut(s) 765, 881
TasI AATT 6 cut(s) 73, 171, 193, 266, 414, 525
TatI WGTACW 2 cut(s) 381, 621
TauI GCSGC 2 cut(s) 464, 515
TfiI GAWTC 2 cut(s) 10, 349
Tru1I TTAA 3 cut(s) 60, 180, 413
Tru9I TTAA 3 cut(s) 60, 180, 413
TscAI CASTG 1 cut(s) 471
TseFI GTSAC 3 cut(s) 202, 552, 815
TseI GCWGC 2 cut(s) 827, 857
Tsp45I GTSAC 3 cut(s) 202, 552, 815
TspDTI ATGAA 7 cut(s) 263, 392, 407, 489, 599, 603, 687
TspRI CASTG 1 cut(s) 471
VpaK11BI GGWCC 4 cut(s) 94, 397, 429, 479
XapI RAATTY 1 cut(s) 171
XbaI TCTAGA 1 cut(s) 806
XceI RCATGY 4 cut(s) 112, 157, 331, 816
XspI CTAG 4 cut(s) 168, 441, 597, 807
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.