RLG00000019064

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017819
Physical Location & Seq
Reverse (-)
45858325 .. 45859496
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019064

Sequence Viewer

Length: 594 bp
ATGGGTGTGTGGGGTGTACGTGGTTGGTACCATGAGGCTATAACTGTGTTTAGGGAGATGCAGAGTGAGGGGTTGAAGCCGAATTCGCGTGGTGTGGTTGCATTGCTTTTGGCTTGTAGGGAGGTTTTGGAGTTGAGATCCGGAAAAGAGATACATGTCTGTGCTGGTTTGCTGGGTGTCTGTGTTTTGGTTCTTGCTTTGGTGGCCGCTGCCGATCCAAGGCGGATTGGTTCTTGGCTAGATCCTGGTTCGCCGAGTTCGACGGAGTGGGAGAGGGATGATGGTTGGGATGGCGTTGGTTCTAGATCTGGACTATGGCGGGATGATGGTCGGGATGACGTTGGTTCTAGATCTGGACTATGGCAGTACGGTGTTGGGAGAAGGCGGAAGATGGGTGTTGCCTATGACTGGCCTAATGGCGGTGGTGGCACGATGGTGGTTGATGTCCAACACTGGTGGTGGCGCGGTGGGTGTGAGGGTAGAGCGGTGGTGCAGCTACTGCCTTGGGCCGAGATGGATGGACCGTTCAGTTCCTTCGCTGATTTGGGCCTCGCCTTTGCCTGTGGGCCTGGTTTCGGTTTTTATTGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

198

Amino Acids

21.65

Weight (kDa)

5.8

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017819)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0004751
rosa_laevigata RLG00000019064
rosa_multiflora Rmu_sc0016588.1_g000001
rosa_roxburghii Rroxscaffold_1G00027510 Rroxscaffold_1G00033930 Rroxscaffold_4G00319660
rosa_samantha Rh2AG035300 Rh2CG363100 Rh4DG036100 Rh7BG463600 Rh7DG253300
rosa_wichuraiana Rw7G020890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 27
AccB1I GGYRCC 1 cut(s) 27
AccBSI CCGCTC 1 cut(s) 485
AccII CGCG 2 cut(s) 88, 465
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 7 cut(s) 207, 223, 319, 385, 420, 465, 485
AclWI GGATC 3 cut(s) 132, 209, 236
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 3 cut(s) 18, 29, 368
AfiI CCNNNNNNNGG 4 cut(s) 219, 408, 419, 575
AflIII ACRYGT 1 cut(s) 154
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 2 cut(s) 244, 568
AleI CACNNNNGTG 1 cut(s) 434
AloI GAACNNNNNNTCC 2 cut(s) 509, 541
AluBI AGCT 1 cut(s) 496
AluI AGCT 1 cut(s) 496
AlwI GGATC 3 cut(s) 132, 209, 236
AlwNI CAGNNNCTG 1 cut(s) 499
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 5 cut(s) 204, 410, 507, 547, 566
ApeKI GCWGC 2 cut(s) 209, 493
ApoI RAATTY 1 cut(s) 82
Asp718I GGTACC 1 cut(s) 27
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 4 cut(s) 507, 521, 547, 566
AvaII GGWCC 1 cut(s) 521
BanI GGYRCC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 196, 505
BccI CCATC 7 cut(s) 275, 284, 320, 385, 427, 508, 512
BciT130I CCWGG 2 cut(s) 246, 570
BfaI CTAG 3 cut(s) 239, 303, 348
BglII AGATCT 2 cut(s) 305, 350
BisI GCNGC 3 cut(s) 207, 210, 494
BlsI GCNGC 3 cut(s) 208, 211, 495
Bme1390I CCNGG 2 cut(s) 246, 570
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 4 cut(s) 507, 521, 547, 566
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 2 cut(s) 246, 570
BmsI GCATC 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 218, 503
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 4 cut(s) 219, 408, 419, 575
Bse1I ACTGG 2 cut(s) 413, 458
Bse3DI GCAATG 1 cut(s) 101
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 2 cut(s) 246, 570
BseDI CCNNGG 2 cut(s) 218, 503
BseGI GGATG 5 cut(s) 283, 295, 328, 340, 523
BseLI CCNNNNNNNGG 4 cut(s) 219, 408, 419, 575
BseMI GCAATG 1 cut(s) 101
BseNI ACTGG 2 cut(s) 413, 458
BseXI GCAGC 2 cut(s) 196, 505
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 2 cut(s) 88, 465
BshFI GGCC 5 cut(s) 206, 412, 509, 549, 568
BshNI GGYRCC 1 cut(s) 27
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 4 cut(s) 219, 408, 419, 575
BsnI GGCC 5 cut(s) 206, 412, 509, 549, 568
Bsp13I TCCGGA 1 cut(s) 140
Bsp143I GATC 5 cut(s) 137, 214, 241, 305, 350
BspACI CCGC 7 cut(s) 207, 223, 319, 385, 420, 465, 485
BspANI GGCC 5 cut(s) 206, 412, 509, 549, 568
BspEI TCCGGA 1 cut(s) 140
BspFNI CGCG 2 cut(s) 88, 465
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 3 cut(s) 132, 209, 236
BspT107I GGYRCC 1 cut(s) 27
BsrBI CCGCTC 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 101
BsrI ACTGG 2 cut(s) 413, 458
BssECI CCNNGG 2 cut(s) 218, 503
BssMI GATC 5 cut(s) 137, 214, 241, 305, 350
BssT1I CCWWGG 2 cut(s) 218, 503
Bst2UI CCWGG 2 cut(s) 246, 570
Bst4CI ACNGT 3 cut(s) 46, 371, 525
BstAPI GCANNNNNTGC 1 cut(s) 499
BstBAI YACGTR 1 cut(s) 20
BstF5I GGATG 5 cut(s) 283, 295, 328, 340, 523
BstFNI CGCG 2 cut(s) 88, 465
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 5 cut(s) 140, 217, 244, 308, 353
BstMBI GATC 5 cut(s) 137, 214, 241, 305, 350
BstMWI GCNNNNNNNGC 4 cut(s) 85, 203, 426, 499
BstNI CCWGG 2 cut(s) 246, 570
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 244, 568
BstUI CGCG 2 cut(s) 88, 465
BstV1I GCAGC 2 cut(s) 196, 505
BstX2I RGATCY 4 cut(s) 137, 241, 305, 350
BstYI RGATCY 4 cut(s) 137, 241, 305, 350
BsuRI GGCC 5 cut(s) 206, 412, 509, 549, 568
BtsCI GGATG 5 cut(s) 283, 295, 328, 340, 523
BtsIMutI CAGTG 1 cut(s) 451
CaiI CAGNNNCTG 1 cut(s) 499
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 4 cut(s) 507, 521, 547, 566
Csp6I GTAC 3 cut(s) 17, 28, 367
CspCI CAANNNNNGTGG 2 cut(s) 437, 472
CviAII CATG 2 cut(s) 32, 155
CviQI GTAC 3 cut(s) 17, 28, 367
DpnI GATC 5 cut(s) 139, 216, 243, 307, 352
DpnII GATC 5 cut(s) 137, 214, 241, 305, 350
EaeI YGGCCR 1 cut(s) 204
EciI GGCGGA 2 cut(s) 238, 400
Eco130I CCWWGG 2 cut(s) 218, 503
Eco47I GGWCC 1 cut(s) 521
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 244, 568
EcoT14I CCWWGG 2 cut(s) 218, 503
ErhI CCWWGG 2 cut(s) 218, 503
FaeI CATG 2 cut(s) 35, 158
FaiI YATR 6 cut(s) 33, 41, 156, 316, 361, 405
FatI CATG 2 cut(s) 31, 154
FauI CCCGC 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 207, 210, 494
FokI GGATG 5 cut(s) 290, 302, 335, 347, 530
Fsp4HI GCNGC 3 cut(s) 207, 210, 494
FspBI CTAG 3 cut(s) 239, 303, 348
GlaI GCGC 1 cut(s) 464
GluI GCNGC 3 cut(s) 207, 210, 494
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 5 cut(s) 206, 412, 509, 549, 568
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 465
Hin1II CATG 2 cut(s) 35, 158
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 17
Hpy188III TCNNGA 6 cut(s) 141, 303, 309, 332, 348, 354
Hpy8I GTNNAC 1 cut(s) 17
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 375, 544
HpyCH4III ACNGT 3 cut(s) 46, 371, 525
HpyCH4IV ACGT 2 cut(s) 19, 339
HpyCH4V TGCA 3 cut(s) 61, 101, 493
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 203, 426, 499
HpySE526I ACGT 2 cut(s) 19, 339
Hsp92II CATG 2 cut(s) 35, 158
HspAI GCGC 1 cut(s) 463
Kpn2I TCCGGA 1 cut(s) 140
KpnI GGTACC 1 cut(s) 31
Kzo9I GATC 5 cut(s) 137, 214, 241, 305, 350
Lsp1109I GCAGC 2 cut(s) 196, 505
LweI GCATC 1 cut(s) 48
MaeI CTAG 3 cut(s) 239, 303, 348
MaeII ACGT 2 cut(s) 19, 339
MalI GATC 5 cut(s) 139, 216, 243, 307, 352
MbiI CCGCTC 1 cut(s) 485
MboI GATC 5 cut(s) 137, 214, 241, 305, 350
MboII GAAGA 1 cut(s) 400
MflI RGATCY 4 cut(s) 137, 241, 305, 350
MluCI AATT 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 472
MnlI CCTC 6 cut(s) 28, 61, 115, 267, 469, 560
MroI TCCGGA 1 cut(s) 140
MslI CAYNNNNRTG 2 cut(s) 159, 434
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 246, 570
MvaI CCWGG 2 cut(s) 246, 570
MvnI CGCG 2 cut(s) 88, 465
MwoI GCNNNNNNNGC 4 cut(s) 85, 203, 426, 499
NdeII GATC 5 cut(s) 137, 214, 241, 305, 350
NlaIII CATG 2 cut(s) 35, 158
NlaIV GGNNCC 1 cut(s) 29
NmeAIII GCCGAG 2 cut(s) 279, 535
NspI RCATGY 1 cut(s) 158
OliI CACNNNNGTG 1 cut(s) 434
PciI ACATGT 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PkrI GCNGC 3 cut(s) 208, 211, 495
Ppu21I YACGTR 1 cut(s) 20
PscI ACATGT 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 244, 568
PspFI CCCAGC 1 cut(s) 172
PspGI CCWGG 2 cut(s) 244, 568
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 4 cut(s) 507, 521, 547, 566
PstNI CAGNNNCTG 1 cut(s) 499
PsuI RGATCY 4 cut(s) 137, 241, 305, 350
RsaI GTAC 3 cut(s) 18, 29, 368
RsaNI GTAC 3 cut(s) 17, 28, 367
RseI CAYNNNNRTG 2 cut(s) 159, 434
SatI GCNGC 3 cut(s) 207, 210, 494
Sau3AI GATC 5 cut(s) 137, 214, 241, 305, 350
Sau96I GGNCC 4 cut(s) 507, 521, 547, 566
ScrFI CCNGG 2 cut(s) 246, 570
SetI ASST 4 cut(s) 22, 126, 342, 498
SfaNI GCATC 1 cut(s) 48
SinI GGWCC 1 cut(s) 521
SmiMI CAYNNNNRTG 2 cut(s) 159, 434
Sse9I AATT 1 cut(s) 82
SsiI CCGC 7 cut(s) 207, 223, 319, 385, 420, 465, 485
SspMI CTAG 3 cut(s) 239, 303, 348
StyD4I CCNGG 2 cut(s) 244, 568
StyI CCWWGG 2 cut(s) 218, 503
TaaI ACNGT 3 cut(s) 46, 371, 525
TaiI ACGT 2 cut(s) 22, 342
TaqI TCGA 1 cut(s) 260
TasI AATT 1 cut(s) 82
TauI GCSGC 1 cut(s) 209
TscAI CASTG 1 cut(s) 458
TseI GCWGC 2 cut(s) 209, 493
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 1 cut(s) 82
XbaI TCTAGA 2 cut(s) 302, 347
XceI RCATGY 1 cut(s) 158
XspI CTAG 3 cut(s) 239, 303, 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.