Rh2CG363100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017819
Physical Location & Seq
Reverse (-)
49188037 .. 49189064
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG363100.1

Sequence Viewer

Length: 465 bp
ATGGCGGTCTGCGGAAGAGGCTTGGGCGGTGGGGTTGAGAGCGAGGATGCGACGACAGGTGAGGAGGAGCTGGATAGGACGGCTTGGGTCACCACCGGCGAGGCCTTGACTGACCGGCGGCGGGCCAGCGCTGTGAGCAGGCGCTTCATCGCCATGGCTGTTAGCTCAGAGAAAGCCTTAGGGTTTGCTAATATAGACGAATCTGAATTTGATTTTCACAAAGGATTTGGGAGTTGGCGGGTGGTGGATCGAGTTTGTTGGCTCACTGGTTTGCTGGGTGTTTGTGTTTTGGTTCTTGCTTTGGTGGCCGCTGCCGATCTATGGCGGATTGGTTCTTGGCTAGATCCTGGTTCGCCGAGTTCGATGGAGTGGGAGAGGGATGAAGGTTGGGATAGCGTTGGTTCTAGATCTGGACTATGGCGGGATGATGGTTGGGATGACATTGGTTCTAGATCTGGACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.74

Weight (kDa)

4.53

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017819)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0004751
rosa_laevigata RLG00000019064
rosa_multiflora Rmu_sc0016588.1_g000001
rosa_roxburghii Rroxscaffold_1G00027510 Rroxscaffold_1G00033930 Rroxscaffold_4G00319660
rosa_samantha Rh2AG035300 Rh2CG363100 Rh4DG036100 Rh7BG463600 Rh7DG253300
rosa_wichuraiana Rw7G020890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 5, 12, 27, 118, 121, 238, 309, 325, 421
AclWI GGATC 2 cut(s) 255, 338
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 206
AfeI AGCGCT 1 cut(s) 130
AfiI CCNNNNNNNGG 2 cut(s) 121, 321
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 2 cut(s) 70, 165
AluI AGCT 2 cut(s) 70, 165
AlwI GGATC 2 cut(s) 255, 338
Aor51HI AGCGCT 1 cut(s) 130
AoxI GGCC 3 cut(s) 102, 123, 306
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 206
AspLEI GCGC 2 cut(s) 131, 144
AspS9I GGNCC 1 cut(s) 123
AsuHPI GGTGA 2 cut(s) 71, 82
AxyI CCTNAGG 1 cut(s) 178
BbvI GCAGC 1 cut(s) 298
BccI CCATC 2 cut(s) 358, 422
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 348
BfaI CTAG 3 cut(s) 341, 405, 450
BfmI CTRYAG 1 cut(s) 461
BfoI RGCGCY 2 cut(s) 132, 145
BglII AGATCT 2 cut(s) 407, 452
BisI GCNGC 3 cut(s) 119, 309, 312
BlsI GCNGC 3 cut(s) 120, 310, 313
Bme1390I CCNGG 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 123
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 321
Bse118I RCCGGY 2 cut(s) 95, 114
Bse1I ACTGG 1 cut(s) 271
Bse21I CCTNAGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 4 cut(s) 52, 385, 430, 442
BseLI CCNNNNNNNGG 2 cut(s) 121, 321
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 2 cut(s) 77, 80
BseXI GCAGC 1 cut(s) 298
BseYI CCCAGC 1 cut(s) 274
BshFI GGCC 3 cut(s) 104, 125, 308
BsiSI CCGG 2 cut(s) 96, 115
BslI CCNNNNNNNGG 2 cut(s) 121, 321
BsnI GGCC 3 cut(s) 104, 125, 308
Bsp143I GATC 5 cut(s) 247, 316, 343, 407, 452
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 9 cut(s) 5, 12, 27, 118, 121, 238, 309, 325, 421
BspANI GGCC 3 cut(s) 104, 125, 308
BspCNI CTCAG 1 cut(s) 179
BspPI GGATC 2 cut(s) 255, 338
BsrFI RCCGGY 2 cut(s) 95, 114
BsrI ACTGG 1 cut(s) 271
BssAI RCCGGY 2 cut(s) 95, 114
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 5 cut(s) 247, 316, 343, 407, 452
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 348
Bst6I CTCTTC 1 cut(s) 10
BstC8I GCNNGC 3 cut(s) 123, 127, 140
BstDEI CTNAG 2 cut(s) 166, 178
BstDSI CCRYGG 1 cut(s) 153
BstEII GGTNACC 1 cut(s) 88
BstF5I GGATG 4 cut(s) 52, 385, 430, 442
BstH2I RGCGCY 2 cut(s) 132, 145
BstHHI GCGC 2 cut(s) 131, 144
BstKTI GATC 5 cut(s) 250, 319, 346, 410, 455
BstMBI GATC 5 cut(s) 247, 316, 343, 407, 452
BstMWI GCNNNNNNNGC 3 cut(s) 18, 135, 305
BstNI CCWGG 1 cut(s) 348
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 3 cut(s) 343, 407, 452
BstYI RGATCY 3 cut(s) 343, 407, 452
Bsu36I CCTNAGG 1 cut(s) 178
BsuRI GGCC 3 cut(s) 104, 125, 308
BtgI CCRYGG 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 4 cut(s) 52, 385, 430, 442
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 3 cut(s) 123, 127, 140
CfoI GCGC 2 cut(s) 131, 144
Cfr10I RCCGGY 2 cut(s) 95, 114
Cfr13I GGNCC 1 cut(s) 123
CviAII CATG 1 cut(s) 154
DdeI CTNAG 2 cut(s) 166, 178
DpnI GATC 5 cut(s) 249, 318, 345, 409, 454
DpnII GATC 5 cut(s) 247, 316, 343, 407, 452
EaeI YGGCCR 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 10
EarI CTCTTC 1 cut(s) 10
EciI GGCGGA 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 104
Eco47III AGCGCT 1 cut(s) 130
Eco81I CCTNAGG 1 cut(s) 178
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 157
FaiI YATR 5 cut(s) 155, 194, 322, 418, 463
FatI CATG 1 cut(s) 153
FauI CCCGC 3 cut(s) 114, 231, 414
Fnu4HI GCNGC 3 cut(s) 119, 309, 312
FokI GGATG 4 cut(s) 59, 392, 437, 449
Fsp4HI GCNGC 3 cut(s) 119, 309, 312
FspBI CTAG 3 cut(s) 341, 405, 450
GlaI GCGC 2 cut(s) 130, 143
GluI GCNGC 3 cut(s) 119, 309, 312
GsaI CCCAGC 1 cut(s) 278
HaeII RGCGCY 2 cut(s) 132, 145
HaeIII GGCC 3 cut(s) 104, 125, 308
HapII CCGG 2 cut(s) 96, 115
HhaI GCGC 2 cut(s) 131, 144
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 2 cut(s) 129, 142
HinP1I GCGC 2 cut(s) 129, 142
HinfI GANTC 1 cut(s) 200
HpaII CCGG 2 cut(s) 96, 115
HphI GGTGA 2 cut(s) 71, 82
Hpy188I TCNGA 2 cut(s) 169, 205
Hpy188III TCNNGA 4 cut(s) 405, 411, 450, 456
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 135, 305
HpyF3I CTNAG 2 cut(s) 166, 178
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 2 cut(s) 129, 142
Kzo9I GATC 5 cut(s) 247, 316, 343, 407, 452
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 37
MaeI CTAG 3 cut(s) 341, 405, 450
MaeIII GTNAC 1 cut(s) 88
MalI GATC 5 cut(s) 249, 318, 345, 409, 454
MboI GATC 5 cut(s) 247, 316, 343, 407, 452
MboII GAAGA 1 cut(s) 27
MflI RGATCY 3 cut(s) 343, 407, 452
MluCI AATT 1 cut(s) 206
MnlI CCTC 6 cut(s) 11, 37, 55, 58, 94, 369
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 2 cut(s) 96, 115
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 3 cut(s) 18, 135, 305
NcoI CCATGG 1 cut(s) 153
NdeII GATC 5 cut(s) 247, 316, 343, 407, 452
NlaIII CATG 1 cut(s) 157
NmeAIII GCCGAG 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 88
PceI AGGCCT 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 359
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 3 cut(s) 120, 310, 313
Psp6I CCWGG 1 cut(s) 346
PspEI GGTNACC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 274
PspGI CCWGG 1 cut(s) 346
PspPI GGNCC 1 cut(s) 123
PsuI RGATCY 3 cut(s) 343, 407, 452
RseI CAYNNNNRTG 1 cut(s) 152
SatI GCNGC 3 cut(s) 119, 309, 312
Sau3AI GATC 5 cut(s) 247, 316, 343, 407, 452
Sau96I GGNCC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 348
SetI ASST 4 cut(s) 61, 72, 167, 388
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 461
SgrAI CRCCGGYG 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 1 cut(s) 206
SseBI AGGCCT 1 cut(s) 104
SsiI CCGC 9 cut(s) 5, 12, 27, 118, 121, 238, 309, 325, 421
SspMI CTAG 3 cut(s) 341, 405, 450
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 153
TaqI TCGA 2 cut(s) 250, 362
TasI AATT 1 cut(s) 206
TauI GCSGC 2 cut(s) 121, 311
TfiI GAWTC 1 cut(s) 200
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 136, 396
TspRI CASTG 1 cut(s) 271
XapI RAATTY 1 cut(s) 206
XbaI TCTAGA 2 cut(s) 404, 449
XspI CTAG 3 cut(s) 341, 405, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.