Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0017819

Physical Location & Seq

Genomic Coordinates Reverse (-)

23977472 .. 23978625

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G020890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCGGTCGACGGAAGAGGCCTCGACAGTGGGATTGAGAATGAAGGTGCGACAACAAGTGAGGTGGAGCTGGATCGAACTGCTTGGGTCAGCGCCAGAGAGGCCTTGATCGACCGGCAGTGGGCCAGAGGCTTATACTTGCAATGCATTTTCTTCTCTAATTTTGAAGCAGCTCAGTTTGAAGATTTCCTCCAGTCGTTCCAAACTGAAGGGTTAGATATAAGTGCTACAGTTTTGAAGAATTTGAAAGCATCACAAGTTGCTGGTAGAGCCAAGGAAGTATGCAGAGAAGCCAGCCAAGTTTGCGAGTCCAAAATGCAGCCCCCGCTTCATCCAGCAGCCTCGTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

117

Amino Acids

12.87

Weight (kDa)

4.71

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017819)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0004751
rosa_laevigata	RLG00000019064
rosa_multiflora	Rmu_sc0016588.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027510 Rroxscaffold_1G00033930 Rroxscaffold_4G00319660
rosa_samantha	Rh2AG035300 Rh2CG363100 Rh4DG036100 Rh7BG463600 Rh7DG253300
rosa_wichuraiana	Rw7G020890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	2 cut(s)	5, 326
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	121
AgsI	TTSAA	5 cut(s)	167, 182, 238, 247, 349
AluBI	AGCT	2 cut(s)	70, 173
AluI	AGCT	2 cut(s)	70, 173
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	3 cut(s)	19, 102, 123
ApeKI	GCWGC	3 cut(s)	170, 319, 338
ApoI	RAATTY	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	182, 331, 350
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	96
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	3 cut(s)	171, 320, 339
BlsI	GCNGC	3 cut(s)	172, 321, 340
BmgT120I	GGNCC	1 cut(s)	123
BmsI	GCATC	1 cut(s)	260
BpmI	CTGGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	331
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	3 cut(s)	182, 331, 350
Bsh1285I	CGRYCG	2 cut(s)	9, 115
BshFI	GGCC	3 cut(s)	21, 104, 125
BsiEI	CGRYCG	2 cut(s)	9, 115
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	121
BsnI	GGCC	3 cut(s)	21, 104, 125
Bsp143I	GATC	2 cut(s)	73, 108
BspACI	CCGC	2 cut(s)	5, 326
BspANI	GGCC	3 cut(s)	21, 104, 125
BspCNI	CTCAG	1 cut(s)	187
BspPI	GGATC	1 cut(s)	81
BsrDI	GCAATG	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	2 cut(s)	73, 108
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	29, 232
Bst6I	CTCTTC	1 cut(s)	10
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	331
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	76, 111
BstMBI	GATC	2 cut(s)	73, 108
BstMCI	CGRYCG	2 cut(s)	9, 115
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 269, 303, 325
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	3 cut(s)	182, 331, 350
BsuRI	GGCC	3 cut(s)	21, 104, 125
BtsCI	GGATG	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	34, 125
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	123
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	75, 110
DpnII	GATC	2 cut(s)	73, 108
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	273
Eco147I	AGGCCT	2 cut(s)	21, 104
Eco57I	CTGAAG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	273
FaiI	YATR	3 cut(s)	136, 221, 283
FauI	CCCGC	1 cut(s)	333
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	171, 320, 339
FokI	GGATG	1 cut(s)	318
Fsp4HI	GCNGC	3 cut(s)	171, 320, 339
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	3 cut(s)	171, 320, 339
GsuI	CTGGAG	1 cut(s)	176
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	3 cut(s)	21, 104, 125
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	38, 203
HpyCH4III	ACNGT	2 cut(s)	29, 232
HpyCH4V	TGCA	4 cut(s)	142, 147, 285, 319
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 269, 303, 325
HpyF3I	CTNAG	1 cut(s)	174
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	73, 108
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	8 cut(s)	56, 109, 128, 139, 206, 249, 307, 348
Lsp1109I	GCAGC	3 cut(s)	182, 331, 350
LweI	GCATC	1 cut(s)	260
MalI	GATC	2 cut(s)	75, 110
MboI	GATC	2 cut(s)	73, 108
MboII	GAAGA	4 cut(s)	27, 145, 194, 250
MluCI	AATT	3 cut(s)	160, 241, 349
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	7 cut(s)	11, 32, 55, 94, 122, 200, 352
Mph1103I	ATGCAT	1 cut(s)	149
MspI	CCGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	4 cut(s)	101, 269, 303, 325
NdeII	GATC	2 cut(s)	73, 108
NsiI	ATGCAT	1 cut(s)	149
PceI	AGGCCT	2 cut(s)	21, 104
PkrI	GCNGC	3 cut(s)	172, 321, 340
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	123
SalI	GTCGAC	1 cut(s)	8
SatI	GCNGC	3 cut(s)	171, 320, 339
Sau3AI	GATC	2 cut(s)	73, 108
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	317
SetI	ASST	4 cut(s)	49, 66, 72, 175
SfaNI	GCATC	1 cut(s)	260
SfcI	CTRYAG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	160, 241, 349
SseBI	AGGCCT	2 cut(s)	21, 104
SsiI	CCGC	2 cut(s)	5, 326
StuI	AGGCCT	2 cut(s)	21, 104
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	29, 232
TaqI	TCGA	4 cut(s)	9, 24, 76, 111
TasI	AATT	3 cut(s)	160, 241, 349
TscAI	CASTG	2 cut(s)	34, 125
TseI	GCWGC	3 cut(s)	170, 319, 338
TspDTI	ATGAA	2 cut(s)	57, 320
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	34, 125
XapI	RAATTY	1 cut(s)	241
XmiI	GTMKAC	1 cut(s)	9
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.