Rh7BG463600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017819
Physical Location & Seq
Forward (+)
54935757 .. 54936089
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG463600.1

Sequence Viewer

Length: 333 bp
ATGGCGGTCGGCGGAGGAGGCCTCGGCAGTGAGGTTGAGAGAGAAGGTTCGACGGCGGGTGAGGTGGAGCTGGATCAGACGGCTTGGTTCAGCACCGGCGAGGCCTTGACCGAGCAGCGGCTGGGCAGCGCTATGAGAAAGTGCTTCATCGCCATGGCTGTAGCTCAGAGAAGAGCCTTAGGGTTTGGTGATACAACCCAGTTTCACAGAAAATACTCTCTCTCTCTGTTAAGTTTTTTGACTCGTCCTTTTGAGTTTTGGTGGTTGCAAAATTTCCTTCTGAGATTGGTTGCGATTGAATTGATGGGACAAAATTGCTTGGGATTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.23

Weight (kDa)

5.78

Isoelectric Point (pI)

33.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017819)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0004751
rosa_laevigata RLG00000019064
rosa_multiflora Rmu_sc0016588.1_g000001
rosa_roxburghii Rroxscaffold_1G00027510 Rroxscaffold_1G00033930 Rroxscaffold_4G00319660
rosa_samantha Rh2AG035300 Rh2CG363100 Rh4DG036100 Rh7BG463600 Rh7DG253300
rosa_wichuraiana Rw7G020890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 12, 56, 118
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 271
AfeI AGCGCT 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 2 cut(s) 299, 328
AluBI AGCT 2 cut(s) 70, 164
AluI AGCT 2 cut(s) 70, 164
AlwI GGATC 1 cut(s) 81
AlwNI CAGNNNCTG 1 cut(s) 121
Aor51HI AGCGCT 1 cut(s) 130
AoxI GGCC 2 cut(s) 19, 102
ApeKI GCWGC 2 cut(s) 115, 126
ApoI RAATTY 1 cut(s) 271
AspLEI GCGC 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 71, 200
AxyI CCTNAGG 1 cut(s) 178
BbvI GCAGC 2 cut(s) 127, 138
BccI CCATC 1 cut(s) 298
BceAI ACGGC 2 cut(s) 69, 96
BfmI CTRYAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 3 cut(s) 116, 119, 127
BlsI GCNGC 3 cut(s) 117, 120, 128
BmrI ACTGGG 1 cut(s) 193
BmuI ACTGGG 1 cut(s) 193
BplI GAGNNNNNCTC 1 cut(s) 38
BsaJI CCNNGG 2 cut(s) 22, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 1 cut(s) 199
Bse21I CCTNAGG 1 cut(s) 178
BseDI CCNNGG 2 cut(s) 22, 153
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 179, 272
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 127, 138
BseYI CCCAGC 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 21, 104
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 2 cut(s) 21, 104
Bsp143I GATC 1 cut(s) 73
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 4 cut(s) 5, 12, 56, 118
BspANI GGCC 2 cut(s) 21, 104
BspCNI CTCAG 2 cut(s) 178, 273
BspPI GGATC 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 22, 153
BssMI GATC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 166
BstDEI CTNAG 3 cut(s) 165, 178, 281
BstDSI CCRYGG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 1 cut(s) 76
BstMBI GATC 1 cut(s) 73
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 127, 138
Bsu36I CCTNAGG 1 cut(s) 178
BsuRI GGCC 2 cut(s) 21, 104
BtgI CCRYGG 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 34
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 95
CviAII CATG 1 cut(s) 154
CviJI RGCY 8 cut(s) 21, 70, 83, 104, 121, 158, 164, 176
CviKI_1 RGCY 8 cut(s) 21, 70, 83, 104, 121, 158, 164, 176
DdeI CTNAG 3 cut(s) 165, 178, 281
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
EciI GGCGGA 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 153
Eco147I AGGCCT 2 cut(s) 21, 104
Eco47III AGCGCT 1 cut(s) 130
Eco81I CCTNAGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 157
FaiI YATR 2 cut(s) 134, 155
FaqI GGGAC 1 cut(s) 321
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 116, 119, 127
Fsp4HI GCNGC 3 cut(s) 116, 119, 127
GlaI GCGC 1 cut(s) 130
GluI GCNGC 3 cut(s) 116, 119, 127
GsaI CCCAGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 2 cut(s) 21, 104
HapII CCGG 1 cut(s) 96
HhaI GCGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 2 cut(s) 241, 324
HpaII CCGG 1 cut(s) 96
HphI GGTGA 2 cut(s) 71, 200
Hpy188I TCNGA 3 cut(s) 78, 168, 282
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 38, 287
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 3 cut(s) 165, 178, 281
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 1 cut(s) 73
LguI GCTCTTC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 4 cut(s) 56, 107, 109, 212
Lsp1109I GCAGC 2 cut(s) 127, 138
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 1 cut(s) 183
MfeI CAATTG 1 cut(s) 328
MluCI AATT 4 cut(s) 271, 299, 313, 328
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 6 cut(s) 8, 11, 25, 32, 55, 94
MseI TTAA 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 96
MunI CAATTG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 18
NcoI CCATGG 1 cut(s) 153
NdeII GATC 1 cut(s) 73
NlaIII CATG 1 cut(s) 157
PceI AGGCCT 2 cut(s) 21, 104
PciSI GCTCTTC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 324
PkrI GCNGC 3 cut(s) 117, 120, 128
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PspFI CCCAGC 1 cut(s) 121
PstNI CAGNNNCTG 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 152
SapI GCTCTTC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 3 cut(s) 116, 119, 127
Sau3AI GATC 1 cut(s) 73
SchI GAGTC 1 cut(s) 235
SetI ASST 5 cut(s) 36, 49, 66, 72, 166
SfcI CTRYAG 1 cut(s) 159
SgrAI CRCCGGYG 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 4 cut(s) 271, 299, 313, 328
SseBI AGGCCT 2 cut(s) 21, 104
SsiI CCGC 4 cut(s) 5, 12, 56, 118
StuI AGGCCT 2 cut(s) 21, 104
StyI CCWWGG 1 cut(s) 153
TaqI TCGA 1 cut(s) 50
TaqII GACCGA 1 cut(s) 125
TasI AATT 4 cut(s) 271, 299, 313, 328
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 115, 126
TspDTI ATGAA 1 cut(s) 136
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.