RLG00000019178

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0020674
Physical Location & Seq
Forward (+)
47815135 .. 47817572
2438 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019178

Sequence Viewer

Length: 363 bp
ATGAACGCTGTTTTGTTAGAGGACTTTGTCAAATGTCACATTTATTCACATATGTCATCATTATTGAGAAGCATAGAGTCATCTGCTGCAAGCTCAAGACATGCAAAAGTAGTCGCTAATACACCCTTTAACATATTTAGGAGACAGCTTTTGGCTTGGTGTAGCAGGAGGCTTCTAGATCCTCCGCTTAAGATGACGGCCAGTATGCACTCATTCTTGTTTTCCTCCTTGGTTAGACAATTAAAAATAGCTTGGTATCTTGGAGTTGGAGTGATGCATATCCCAAGCTACGGCGTCTTTGCTTTAATTGTTAGGATGAAGCAGTTGTGGTTCTCAAGATCATTCCCAGAGTCTTCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.71

Weight (kDa)

10.43

Isoelectric Point (pI)

88.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020674)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019178
rosa_multiflora Rmu_sc0001777.1_g000004
rosa_roxburghii Rroxscaffold_3G00237170
rosa_samantha Rh2AG431200 Rh7DG397800
rosa_wichuraiana Rw2G035230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 185
AclWI GGATC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 290
AflII CTTAAG 1 cut(s) 188
AluBI AGCT 4 cut(s) 93, 148, 251, 288
AluI AGCT 4 cut(s) 93, 148, 251, 288
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 1 cut(s) 173
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 213, 307
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 176
BfrI CTTAAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmsI GCATC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 345
BpuEI CTTGAG 2 cut(s) 79, 319
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 1 cut(s) 321
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 136
BsnI GGCC 1 cut(s) 200
Bsp143I GATC 2 cut(s) 178, 338
BspACI CCGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 200
BspPI GGATC 1 cut(s) 173
BspTI CTTAAG 1 cut(s) 188
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 2 cut(s) 178, 338
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 294
BstAFI CTTAAG 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 91
BstF5I GGATG 1 cut(s) 321
BstKTI GATC 2 cut(s) 181, 341
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 2 cut(s) 178, 338
BstNSI RCATGY 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 345
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 200
BtsCI GGATG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 91
CseI GACGC 1 cut(s) 283
CviAII CATG 1 cut(s) 101
CviJI RGCY 7 cut(s) 93, 148, 155, 172, 200, 251, 288
CviKI_1 RGCY 7 cut(s) 93, 148, 155, 172, 200, 251, 288
DpnI GATC 2 cut(s) 180, 340
DpnII GATC 2 cut(s) 178, 338
EaeI YGGCCR 1 cut(s) 198
Eco130I CCWWGG 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 104
FaiI YATR 7 cut(s) 51, 53, 74, 102, 134, 206, 279
FatI CATG 1 cut(s) 100
FauNDI CATATG 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 1 cut(s) 200
HgaI GACGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 1 cut(s) 104
HinfI GANTC 2 cut(s) 77, 350
Hpy188III TCNNGA 3 cut(s) 96, 176, 336
HpyCH4V TGCA 4 cut(s) 89, 104, 208, 277
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 2 cut(s) 178, 338
LpnPI CCDG 3 cut(s) 151, 214, 342
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 35
MalI GATC 2 cut(s) 180, 340
MboI GATC 2 cut(s) 178, 338
MboII GAAGA 1 cut(s) 345
MflI RGATCY 1 cut(s) 178
MluCI AATT 2 cut(s) 239, 306
MlyI GAGTC 2 cut(s) 86, 359
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 4 cut(s) 13, 162, 192, 235
Mph1103I ATGCAT 1 cut(s) 279
MseI TTAA 4 cut(s) 129, 189, 242, 305
MspCI CTTAAG 1 cut(s) 188
NdeI CATATG 1 cut(s) 51
NdeII GATC 2 cut(s) 178, 338
NlaIII CATG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 279
NspI RCATGY 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 2 cut(s) 85, 358
PpsI GAGTC 2 cut(s) 85, 358
PsuI RGATCY 1 cut(s) 178
PsyI GACNNNGTC 1 cut(s) 26
SaqAI TTAA 4 cut(s) 129, 189, 242, 305
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 178, 338
SchI GAGTC 2 cut(s) 86, 359
SetI ASST 4 cut(s) 95, 150, 253, 290
SfaNI GCATC 1 cut(s) 264
SmlI CTYRAG 3 cut(s) 94, 188, 334
SmoI CTYRAG 3 cut(s) 94, 188, 334
Sse9I AATT 2 cut(s) 239, 306
SsiI CCGC 1 cut(s) 185
SspMI CTAG 1 cut(s) 176
StyI CCWWGG 1 cut(s) 228
TasI AATT 2 cut(s) 239, 306
Tru1I TTAA 4 cut(s) 129, 189, 242, 305
Tru9I TTAA 4 cut(s) 129, 189, 242, 305
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 17, 332
Tth111I GACNNNGTC 1 cut(s) 26
Vha464I CTTAAG 1 cut(s) 188
XbaI TCTAGA 1 cut(s) 175
XceI RCATGY 1 cut(s) 104
XspI CTAG 1 cut(s) 176
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.