Rroxscaffold_3G00237170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0020674
Physical Location & Seq
Forward (+)
24776464 .. 24788930
12467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237170.1

Sequence Viewer

Length: 504 bp
ATGCGATACACATACAACTATTCTCGTCACCCCTCCAACCAAGTCTCGATTCTTTTGAATATGAGGAGCTCGGAAGAAGATCACCGAATTGGAGGATTGACGGGCTGGTCAAGCTCGGTGGGAAAGACCGGGGGGACGGTGCCACTCTCCGCCCTATCGCGCCCGATCTCCACCATTGTAGCCCCGCCGCACCACCCGCAATCGGCGGCCTTGGGTTTCTCACTTGGATGGAGCCTCGGTTCCCCAGAGCACATATTGCTCAATCCGCCAAAGGGCAGGTTATCACCAATGGCAGCCACGGTCCGGTTCTCTATGTCGGCGACGAGAGATCGGAAATCGGGATTGAAGAAGAAGCAGTCACGAGACCCAAACCCGCAGGACGACTCCAGGACCCGGACCCCGGCAGTTATCTCCTTCACGTCCCCTCCGAGACGAACCACCATCGGCGATGAAACACGCCGCCAAATTGTCGCAACTAGCATCGGTGGCTGGACCGGGCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.19

Weight (kDa)

11.39

Isoelectric Point (pI)

65.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020674)

Species Orthologous Gene IDs
rosa_laevigata RLG00000019178
rosa_multiflora Rmu_sc0001777.1_g000004
rosa_roxburghii Rroxscaffold_3G00237170
rosa_samantha Rh2AG431200 Rh7DG397800
rosa_wichuraiana Rw2G035230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
Acc36I ACCTGC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 139
AccII CGCG 1 cut(s) 160
AciI CCGC 9 cut(s) 150, 185, 188, 197, 206, 266, 374, 460, 499
AfiI CCNNNNNNNGG 5 cut(s) 202, 272, 303, 393, 400
AgsI TTSAA 2 cut(s) 58, 346
AjiI CACGTC 1 cut(s) 420
AjnI CCWGG 1 cut(s) 386
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AloI GAACNNNNNNTCC 2 cut(s) 223, 255
AluBI AGCT 2 cut(s) 69, 114
AluI AGCT 2 cut(s) 69, 114
Alw21I GWGCWC 2 cut(s) 71, 252
Alw26I GTCTC 3 cut(s) 49, 357, 424
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 293
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 4 cut(s) 301, 390, 396, 492
AsuC2I CCSGG 4 cut(s) 130, 394, 401, 496
AsuHPI GGTGA 3 cut(s) 20, 74, 276
AvaII GGWCC 4 cut(s) 301, 390, 396, 492
BanI GGYRCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 71
BauI CACGAG 1 cut(s) 360
Bbv12I GWGCWC 2 cut(s) 71, 252
BbvI GCAGC 1 cut(s) 305
BccI CCATC 2 cut(s) 222, 449
BciT130I CCWGG 1 cut(s) 388
BcnI CCSGG 4 cut(s) 130, 394, 401, 496
BcoDI GTCTC 3 cut(s) 49, 357, 424
BfaI CTAG 1 cut(s) 477
BfuAI ACCTGC 1 cut(s) 267
BisI GCNGC 4 cut(s) 188, 207, 294, 460
BlsI GCNGC 4 cut(s) 189, 208, 295, 461
Bme1390I CCNGG 5 cut(s) 130, 388, 394, 401, 496
Bme18I GGWCC 4 cut(s) 301, 390, 396, 492
BmgBI CACGTC 1 cut(s) 420
BmgT120I GGNCC 4 cut(s) 301, 390, 396, 492
BmiI GGNNCC 5 cut(s) 141, 233, 241, 392, 398
BmrFI CCNGG 5 cut(s) 130, 388, 394, 401, 496
BmsI GCATC 1 cut(s) 489
BpmI CTGGAG 1 cut(s) 370
BpuMI CCSGG 4 cut(s) 130, 394, 401, 496
BsaI GGTCTC 1 cut(s) 357
BsaJI CCNNGG 5 cut(s) 129, 210, 235, 297, 399
BsaWI WCCGGW 1 cut(s) 303
BsaXI ACNNNNNCTCC 4 cut(s) 223, 253, 409, 439
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 272, 303, 393, 400
BseBI CCWGG 1 cut(s) 388
BseDI CCNNGG 5 cut(s) 129, 210, 235, 297, 399
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 5 cut(s) 202, 272, 303, 393, 400
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 160
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 71, 252
BsiSI CCGG 5 cut(s) 129, 304, 394, 401, 495
BslFI GGGAC 2 cut(s) 148, 406
BslI CCNNNNNNNGG 5 cut(s) 202, 272, 303, 393, 400
BsmAI GTCTC 3 cut(s) 49, 357, 424
BsmBI CGTCTC 1 cut(s) 424
BsmFI GGGAC 2 cut(s) 148, 406
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 357
Bsp1286I GDGCHC 2 cut(s) 71, 252
Bsp143I GATC 3 cut(s) 79, 165, 328
BspACI CCGC 9 cut(s) 150, 185, 188, 197, 206, 266, 374, 460, 499
BspANI GGCC 1 cut(s) 209
BspFNI CGCG 1 cut(s) 160
BspLI GGNNCC 5 cut(s) 141, 233, 241, 392, 398
BspMI ACCTGC 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 357
BssECI CCNNGG 5 cut(s) 129, 210, 235, 297, 399
BssMI GATC 3 cut(s) 79, 165, 328
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 139, 301
BstAPI GCANNNNNTGC 1 cut(s) 256
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 3 cut(s) 82, 168, 331
BstMAI GTCTC 3 cut(s) 49, 357, 424
BstMBI GATC 3 cut(s) 79, 165, 328
BstMWI GCNNNNNNNGC 5 cut(s) 111, 196, 256, 265, 486
BstNI CCWGG 1 cut(s) 388
BstSCI CCNGG 5 cut(s) 128, 386, 392, 399, 494
BstUI CGCG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 305
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 462
BtrI CACGTC 1 cut(s) 420
BtsCI GGATG 1 cut(s) 233
BveI ACCTGC 1 cut(s) 267
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 4 cut(s) 301, 390, 396, 492
CpoI CGGWCCG 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CspI CGGWCCG 1 cut(s) 301
CviJI RGCY 8 cut(s) 69, 105, 114, 182, 209, 234, 296, 489
CviKI_1 RGCY 8 cut(s) 69, 105, 114, 182, 209, 234, 296, 489
DpnI GATC 3 cut(s) 81, 167, 330
DpnII GATC 3 cut(s) 79, 165, 328
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
EciI GGCGGA 2 cut(s) 139, 255
Ecl136II GAGCTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 357
Eco47I GGWCC 4 cut(s) 301, 390, 396, 492
Eco53kI GAGCTC 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 386
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 71
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 424
FaiI YATR 4 cut(s) 13, 62, 254, 314
FaqI GGGAC 2 cut(s) 148, 406
FauI CCCGC 3 cut(s) 192, 204, 381
Fnu4HI GCNGC 4 cut(s) 188, 207, 294, 460
FokI GGATG 1 cut(s) 240
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 4 cut(s) 188, 207, 294, 460
FspBI CTAG 1 cut(s) 477
GlaI GCGC 1 cut(s) 161
GluI GCNGC 4 cut(s) 188, 207, 294, 460
GsuI CTGGAG 1 cut(s) 370
HaeIII GGCC 1 cut(s) 209
HapII CCGG 5 cut(s) 129, 304, 394, 401, 495
HhaI GCGC 1 cut(s) 162
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 2 cut(s) 49, 383
HpaII CCGG 5 cut(s) 129, 304, 394, 401, 495
HphI GGTGA 3 cut(s) 20, 74, 276
Hpy188I TCNGA 3 cut(s) 73, 333, 429
Hpy188III TCNNGA 3 cut(s) 46, 339, 360
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 424
HpyCH4III ACNGT 2 cut(s) 139, 301
HpyCH4IV ACGT 1 cut(s) 419
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 196, 256, 265, 486
HpySE526I ACGT 1 cut(s) 419
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 79, 165, 328
LmnI GCTCC 2 cut(s) 66, 231
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 1 cut(s) 489
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 26, 357
MalI GATC 3 cut(s) 81, 167, 330
MboI GATC 3 cut(s) 79, 165, 328
MboII GAAGA 4 cut(s) 86, 89, 358, 361
MhlI GDGCHC 2 cut(s) 71, 252
MluCI AATT 2 cut(s) 87, 465
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 5 cut(s) 43, 57, 86, 245, 435
MslI CAYNNNNRTG 1 cut(s) 226
MspI CCGG 5 cut(s) 129, 304, 394, 401, 495
MspR9I CCNGG 5 cut(s) 130, 388, 394, 401, 496
MvaI CCWGG 1 cut(s) 388
MvnI CGCG 1 cut(s) 160
MwoI GCNNNNNNNGC 5 cut(s) 111, 196, 256, 265, 486
NciI CCSGG 4 cut(s) 130, 394, 401, 496
NdeII GATC 3 cut(s) 79, 165, 328
NlaIV GGNNCC 5 cut(s) 141, 233, 241, 392, 398
NmuCI GTSAC 2 cut(s) 26, 357
PcsI WCGNNNNNNNCGW 1 cut(s) 425
PfeI GAWTC 1 cut(s) 49
PfoI TCCNGGA 1 cut(s) 386
PkrI GCNGC 4 cut(s) 189, 208, 295, 461
PleI GAGTC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 377
PpuMI RGGWCCY 1 cut(s) 390
Psp124BI GAGCTC 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 386
PspGI CCWGG 1 cut(s) 386
PspN4I GGNNCC 5 cut(s) 141, 233, 241, 392, 398
PspPI GGNCC 4 cut(s) 301, 390, 396, 492
PspPPI RGGWCCY 1 cut(s) 390
RseI CAYNNNNRTG 1 cut(s) 226
Rsr2I CGGWCCG 1 cut(s) 301
RsrII CGGWCCG 1 cut(s) 301
SacI GAGCTC 1 cut(s) 71
SatI GCNGC 4 cut(s) 188, 207, 294, 460
Sau3AI GATC 3 cut(s) 79, 165, 328
Sau96I GGNCC 4 cut(s) 301, 390, 396, 492
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 5 cut(s) 130, 388, 394, 401, 496
SduI GDGCHC 2 cut(s) 71, 252
SetI ASST 4 cut(s) 71, 116, 281, 422
SfaNI GCATC 1 cut(s) 489
SinI GGWCC 4 cut(s) 301, 390, 396, 492
SmiMI CAYNNNNRTG 1 cut(s) 226
Sse9I AATT 2 cut(s) 87, 465
SsiI CCGC 9 cut(s) 150, 185, 188, 197, 206, 266, 374, 460, 499
SspMI CTAG 1 cut(s) 477
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 5 cut(s) 128, 386, 392, 399, 494
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 2 cut(s) 139, 301
TaiI ACGT 1 cut(s) 422
TaqI TCGA 1 cut(s) 47
TasI AATT 2 cut(s) 87, 465
TauI GCSGC 3 cut(s) 190, 209, 462
TfiI GAWTC 1 cut(s) 49
TseFI GTSAC 2 cut(s) 26, 357
TseI GCWGC 1 cut(s) 293
Tsp45I GTSAC 2 cut(s) 26, 357
TspDTI ATGAA 1 cut(s) 465
VpaK11BI GGWCC 4 cut(s) 301, 390, 396, 492
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.