U-box domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g34160 FvH4_6g34160 |
| malus_domestica | MD09G1188100.v1.1 |
| prunus_persica | Prupe.3G045000_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0144481 |
| rosa_laevigata | RLG00000020084 |
| rosa_multiflora | Rmu_sc0005789.1_g000009 Rmu_sc0005789.1_g000011 Rmu_sc0007240.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00101260 |
| rosa_rugosa | Rorug02G0386900 |
| rosa_samantha | Rh2AG439300 Rh2BG449500 Rh2CG426300 Rh2DG459300 |
| rosa_wichuraiana | Rw2G035940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1320 |
| AatII | GACGTC | 1 cut(s) | 600 |
| Acc36I | ACCTGC | 1 cut(s) | 1466 |
| Acc65I | GGTACC | 1 cut(s) | 1454 |
| AccB1I | GGYRCC | 1 cut(s) | 1454 |
| AccII | CGCG | 2 cut(s) | 1105, 1931 |
| AciI | CCGC | 7 cut(s) | 1089, 1105, 1750, 1931, 2215, 2358, 2361 |
| AclWI | GGATC | 2 cut(s) | 1937, 2043 |
| AcoI | YGGCCR | 1 cut(s) | 54 |
| AcsI | RAATTY | 2 cut(s) | 389, 721 |
| AcuI | CTGAAG | 8 cut(s) | 6, 228, 461, 612, 924, 1059, 2204, 2233 |
| AcyI | GRCGYC | 1 cut(s) | 597 |
| AdeI | CACNNNGTG | 1 cut(s) | 2323 |
| AfaI | GTAC | 7 cut(s) | 432, 935, 1456, 1490, 1771, 1924, 2225 |
| AflIII | ACRYGT | 1 cut(s) | 930 |
| AgsI | TTSAA | 8 cut(s) | 636, 916, 1247, 1256, 1284, 1567, 1970, 2002 |
| AjnI | CCWGG | 2 cut(s) | 1706, 1896 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 616, 648, 842, 874 |
| Alw21I | GWGCWC | 6 cut(s) | 256, 313, 629, 987, 1635, 2016 |
| Alw26I | GTCTC | 1 cut(s) | 1127 |
| Alw44I | GTGCAC | 3 cut(s) | 252, 309, 1631 |
| AlwI | GGATC | 2 cut(s) | 1937, 2043 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 590 |
| Ama87I | CYCGRG | 1 cut(s) | 799 |
| AoxI | GGCC | 9 cut(s) | 40, 54, 803, 1053, 1086, 1324, 1364, 1591, 1961 |
| ApaLI | GTGCAC | 3 cut(s) | 252, 309, 1631 |
| ApeKI | GCWGC | 9 cut(s) | 491, 789, 1046, 1100, 1419, 1574, 1760, 1763, 2363 |
| ApoI | RAATTY | 2 cut(s) | 389, 721 |
| Asp718I | GGTACC | 1 cut(s) | 1454 |
| AspLEI | GCGC | 2 cut(s) | 1014, 1105 |
| AspS9I | GGNCC | 5 cut(s) | 41, 283, 803, 1310, 2065 |
| AsuC2I | CCSGG | 3 cut(s) | 1343, 1718, 1790 |
| AsuHPI | GGTGA | 3 cut(s) | 717, 899, 1598 |
| AvaI | CYCGRG | 1 cut(s) | 799 |
| AvaII | GGWCC | 3 cut(s) | 283, 1310, 2065 |
| AxyI | CCTNAGG | 1 cut(s) | 165 |
| BaeGI | GKGCMC | 3 cut(s) | 256, 313, 1635 |
| BalI | TGGCCA | 1 cut(s) | 56 |
| BanI | GGYRCC | 1 cut(s) | 1454 |
| BanII | GRGCYC | 3 cut(s) | 629, 987, 2016 |
| BbsI | GAAGAC | 3 cut(s) | 478, 600, 1518 |
| Bbv12I | GWGCWC | 6 cut(s) | 256, 313, 629, 987, 1635, 2016 |
| BbvI | GCAGC | 9 cut(s) | 503, 801, 1033, 1112, 1406, 1561, 1772, 1775, 2375 |
| BceAI | ACGGC | 1 cut(s) | 1773 |
| BciT130I | CCWGG | 2 cut(s) | 1708, 1898 |
| BciVI | GTATCC | 1 cut(s) | 532 |
| BcnI | CCSGG | 3 cut(s) | 1343, 1718, 1790 |
| BcoDI | GTCTC | 1 cut(s) | 1127 |
| BfaI | CTAG | 3 cut(s) | 1121, 1664, 1712 |
| BfmI | CTRYAG | 3 cut(s) | 601, 1575, 1947 |
| BfuAI | ACCTGC | 1 cut(s) | 1466 |
| BfuI | GTATCC | 1 cut(s) | 532 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1960 |
| BmcAI | AGTACT | 1 cut(s) | 2225 |
| Bme1390I | CCNGG | 5 cut(s) | 1343, 1708, 1718, 1790, 1898 |
| Bme18I | GGWCC | 3 cut(s) | 283, 1310, 2065 |
| BmeT110I | CYCGRG | 1 cut(s) | 799 |
| BmgT120I | GGNCC | 5 cut(s) | 41, 283, 803, 1310, 2065 |
| BmiI | GGNNCC | 2 cut(s) | 804, 1456 |
| BmrFI | CCNGG | 5 cut(s) | 1343, 1708, 1718, 1790, 1898 |
| BpiI | GAAGAC | 3 cut(s) | 478, 600, 1518 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 487, 519 |
| Bpu10I | CCTNAGC | 4 cut(s) | 30, 1057, 2015, 2058 |
| BpuEI | CTTGAG | 4 cut(s) | 531, 613, 1381, 1628 |
| BpuMI | CCSGG | 3 cut(s) | 1343, 1718, 1790 |
| BsaHI | GRCGYC | 1 cut(s) | 597 |
| BsaI | GGTCTC | 1 cut(s) | 1127 |
| BsaJI | CCNNGG | 7 cut(s) | 48, 273, 798, 1167, 1341, 1550, 1839 |
| BsaWI | WCCGGW | 2 cut(s) | 1668, 2032 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 326, 356, 616, 646 |
| Bse118I | RCCGGY | 5 cut(s) | 38, 1515, 1648, 1766, 2067 |
| Bse1I | ACTGG | 7 cut(s) | 1594, 1964, 1998, 2159, 2184, 2271, 2389 |
| Bse21I | CCTNAGG | 1 cut(s) | 165 |
| Bse3DI | GCAATG | 3 cut(s) | 379, 1203, 1887 |
| BseBI | CCWGG | 2 cut(s) | 1708, 1898 |
| BseDI | CCNNGG | 7 cut(s) | 48, 273, 798, 1167, 1341, 1550, 1839 |
| BseMI | GCAATG | 3 cut(s) | 379, 1203, 1887 |
| BseMII | CTCAG | 9 cut(s) | 44, 179, 547, 663, 798, 843, 1455, 2029, 2049 |
| BseNI | ACTGG | 7 cut(s) | 1594, 1964, 1998, 2159, 2184, 2271, 2389 |
| BseRI | GAGGAG | 4 cut(s) | 1187, 1919, 2035, 2395 |
| BseSI | GKGCMC | 3 cut(s) | 256, 313, 1635 |
| BseXI | GCAGC | 9 cut(s) | 503, 801, 1033, 1112, 1406, 1561, 1772, 1775, 2375 |
| BsgI | GTGCAG | 1 cut(s) | 465 |
| Bsh1236I | CGCG | 2 cut(s) | 1105, 1931 |
| BshFI | GGCC | 9 cut(s) | 42, 56, 805, 1055, 1088, 1326, 1366, 1593, 1963 |
| BshNI | GGYRCC | 1 cut(s) | 1454 |
| BsiHKAI | GWGCWC | 6 cut(s) | 256, 313, 629, 987, 1635, 2016 |
| BsiHKCI | CYCGRG | 1 cut(s) | 799 |
| BslFI | GGGAC | 2 cut(s) | 1700, 1876 |
| BsmAI | GTCTC | 1 cut(s) | 1127 |
| BsmFI | GGGAC | 2 cut(s) | 1700, 1876 |
| BsmI | GAATGC | 1 cut(s) | 2131 |
| BsnI | GGCC | 9 cut(s) | 42, 56, 805, 1055, 1088, 1326, 1366, 1593, 1963 |
| Bso31I | GGTCTC | 1 cut(s) | 1127 |
| BsoBI | CYCGRG | 1 cut(s) | 799 |
| Bsp1286I | GDGCHC | 6 cut(s) | 256, 313, 629, 987, 1635, 2016 |
| Bsp1407I | TGTACA | 1 cut(s) | 933 |
| Bsp143I | GATC | 7 cut(s) | 14, 605, 1639, 1942, 2035, 2168, 2190 |
| Bsp19I | CCATGG | 2 cut(s) | 273, 1550 |
| BspACI | CCGC | 7 cut(s) | 1089, 1105, 1750, 1931, 2215, 2358, 2361 |
| BspANI | GGCC | 9 cut(s) | 42, 56, 805, 1055, 1088, 1326, 1366, 1593, 1963 |
| BspCNI | CTCAG | 9 cut(s) | 43, 178, 546, 662, 797, 842, 1456, 2028, 2050 |
| BspFNI | CGCG | 2 cut(s) | 1105, 1931 |
| BspHI | TCATGA | 1 cut(s) | 574 |
| BspLI | GGNNCC | 2 cut(s) | 804, 1456 |
| BspMAI | CTGCAG | 2 cut(s) | 1579, 1951 |
| BspMI | ACCTGC | 1 cut(s) | 1466 |
| BspPI | GGATC | 2 cut(s) | 1937, 2043 |
| BspQI | GCTCTTC | 1 cut(s) | 1526 |
| BspT107I | GGYRCC | 1 cut(s) | 1454 |
| BspTNI | GGTCTC | 1 cut(s) | 1127 |
| BsrDI | GCAATG | 3 cut(s) | 379, 1203, 1887 |
| BsrFI | RCCGGY | 5 cut(s) | 38, 1515, 1648, 1766, 2067 |
| BsrGI | TGTACA | 1 cut(s) | 933 |
| BsrI | ACTGG | 7 cut(s) | 1594, 1964, 1998, 2159, 2184, 2271, 2389 |
| BssAI | RCCGGY | 5 cut(s) | 38, 1515, 1648, 1766, 2067 |
| BssECI | CCNNGG | 7 cut(s) | 48, 273, 798, 1167, 1341, 1550, 1839 |
| BssMI | GATC | 7 cut(s) | 14, 605, 1639, 1942, 2035, 2168, 2190 |
| BssNI | GRCGYC | 1 cut(s) | 597 |
| BssT1I | CCWWGG | 5 cut(s) | 48, 273, 1167, 1550, 1839 |
| Bst2UI | CCWGG | 2 cut(s) | 1708, 1898 |
| Bst4CI | ACNGT | 5 cut(s) | 225, 746, 1558, 1637, 1676 |
| Bst6I | CTCTTC | 6 cut(s) | 1035, 1136, 1242, 1379, 1526, 1965 |
| BstACI | GRCGYC | 1 cut(s) | 597 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1097, 1583, 2369 |
| BstAUI | TGTACA | 1 cut(s) | 933 |
| BstC8I | GCNNGC | 7 cut(s) | 158, 946, 1035, 1328, 1650, 1878, 2139 |
| BstDSI | CCRYGG | 2 cut(s) | 273, 1550 |
| BstFNI | CGCG | 2 cut(s) | 1105, 1931 |
| BstHHI | GCGC | 2 cut(s) | 1014, 1105 |
| BstKTI | GATC | 7 cut(s) | 17, 608, 1642, 1945, 2038, 2171, 2193 |
| BstMAI | GTCTC | 1 cut(s) | 1127 |
| BstMBI | GATC | 7 cut(s) | 14, 605, 1639, 1942, 2035, 2168, 2190 |
| BstNI | CCWGG | 2 cut(s) | 1708, 1898 |
| BstNSI | RCATGY | 1 cut(s) | 934 |
| BstSCI | CCNGG | 5 cut(s) | 1341, 1706, 1716, 1788, 1896 |
| BstSFI | CTRYAG | 3 cut(s) | 601, 1575, 1947 |
| BstSLI | GKGCMC | 3 cut(s) | 256, 313, 1635 |
| BstUI | CGCG | 2 cut(s) | 1105, 1931 |
| BstV1I | GCAGC | 9 cut(s) | 503, 801, 1033, 1112, 1406, 1561, 1772, 1775, 2375 |
| BstV2I | GAAGAC | 3 cut(s) | 478, 600, 1518 |
| BstX2I | RGATCY | 1 cut(s) | 2035 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 280, 824, 1551 |
| BstYI | RGATCY | 1 cut(s) | 2035 |
| Bsu36I | CCTNAGG | 1 cut(s) | 165 |
| BsuI | GTATCC | 1 cut(s) | 532 |
| BsuRI | GGCC | 9 cut(s) | 42, 56, 805, 1055, 1088, 1326, 1366, 1593, 1963 |
| BtgI | CCRYGG | 2 cut(s) | 273, 1550 |
| BtgZI | GCGATG | 1 cut(s) | 353 |
| BtsI | GCAGTG | 1 cut(s) | 1956 |
| BtsIMutI | CAGTG | 3 cut(s) | 509, 1587, 1956 |
| BveI | ACCTGC | 1 cut(s) | 1466 |
| Cac8I | GCNNGC | 7 cut(s) | 158, 946, 1035, 1328, 1650, 1878, 2139 |
| CaiI | CAGNNNCTG | 1 cut(s) | 590 |
| CciI | TCATGA | 1 cut(s) | 574 |
| CfoI | GCGC | 2 cut(s) | 1014, 1105 |
| Cfr10I | RCCGGY | 5 cut(s) | 38, 1515, 1648, 1766, 2067 |
| Cfr13I | GGNCC | 5 cut(s) | 41, 283, 803, 1310, 2065 |
| CsiI | ACCWGGT | 1 cut(s) | 1896 |
| Csp6I | GTAC | 7 cut(s) | 431, 934, 1455, 1489, 1770, 1923, 2224 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 33, 68 |
| CviAII | CATG | 9 cut(s) | 140, 274, 575, 620, 931, 978, 1438, 1492, 1551 |
| CviQI | GTAC | 7 cut(s) | 431, 934, 1455, 1489, 1770, 1923, 2224 |
| DpnI | GATC | 7 cut(s) | 16, 607, 1641, 1944, 2037, 2170, 2192 |
| DpnII | GATC | 7 cut(s) | 14, 605, 1639, 1942, 2035, 2168, 2190 |
| DraI | TTTAAA | 2 cut(s) | 394, 685 |
| DraIII | CACNNNGTG | 1 cut(s) | 2323 |
| EaeI | YGGCCR | 1 cut(s) | 54 |
| Eam1104I | CTCTTC | 6 cut(s) | 1035, 1136, 1242, 1379, 1526, 1965 |
| EarI | CTCTTC | 6 cut(s) | 1035, 1136, 1242, 1379, 1526, 1965 |
| Ecl136II | GAGCTC | 3 cut(s) | 627, 985, 2014 |
| Eco130I | CCWWGG | 5 cut(s) | 48, 273, 1167, 1550, 1839 |
| Eco147I | AGGCCT | 1 cut(s) | 1326 |
| Eco24I | GRGCYC | 3 cut(s) | 629, 987, 2016 |
| Eco31I | GGTCTC | 1 cut(s) | 1127 |
| Eco47I | GGWCC | 3 cut(s) | 283, 1310, 2065 |
| Eco53kI | GAGCTC | 3 cut(s) | 627, 985, 2014 |
| Eco57I | CTGAAG | 8 cut(s) | 6, 228, 461, 612, 924, 1059, 2204, 2233 |
| Eco81I | CCTNAGG | 1 cut(s) | 165 |
| Eco88I | CYCGRG | 1 cut(s) | 799 |
| EcoICRI | GAGCTC | 3 cut(s) | 627, 985, 2014 |
| EcoRII | CCWGG | 2 cut(s) | 1706, 1896 |
| EcoT14I | CCWWGG | 5 cut(s) | 48, 273, 1167, 1550, 1839 |
| EcoT38I | GRGCYC | 3 cut(s) | 629, 987, 2016 |
| ErhI | CCWWGG | 5 cut(s) | 48, 273, 1167, 1550, 1839 |
| FaeI | CATG | 9 cut(s) | 143, 277, 578, 623, 934, 981, 1441, 1495, 1554 |
| FalI | AAGNNNNNCTT | 7 cut(s) | 36, 459, 491, 1017, 1049, 1314, 1346 |
| FaqI | GGGAC | 2 cut(s) | 1700, 1876 |
| FatI | CATG | 9 cut(s) | 139, 273, 574, 619, 930, 977, 1437, 1491, 1550 |
| FriOI | GRGCYC | 3 cut(s) | 629, 987, 2016 |
| FspBI | CTAG | 3 cut(s) | 1121, 1664, 1712 |
| GlaI | GCGC | 2 cut(s) | 1013, 1104 |
| HaeIII | GGCC | 9 cut(s) | 42, 56, 805, 1055, 1088, 1326, 1366, 1593, 1963 |
| HhaI | GCGC | 2 cut(s) | 1014, 1105 |
| Hin1I | GRCGYC | 1 cut(s) | 597 |
| Hin1II | CATG | 9 cut(s) | 143, 277, 578, 623, 934, 981, 1441, 1495, 1554 |
| Hin6I | GCGC | 2 cut(s) | 1012, 1103 |
| HinP1I | GCGC | 2 cut(s) | 1012, 1103 |
| HincII | GTYRAC | 3 cut(s) | 500, 717, 742 |
| HindII | GTYRAC | 3 cut(s) | 500, 717, 742 |
| HindIII | AAGCTT | 4 cut(s) | 154, 954, 1031, 1504 |
| HinfI | GANTC | 9 cut(s) | 246, 496, 587, 672, 794, 1861, 1907, 2086, 2385 |
| HphI | GGTGA | 3 cut(s) | 717, 899, 1598 |
| Hpy166II | GTNNAC | 7 cut(s) | 254, 311, 500, 717, 742, 936, 1633 |
| Hpy188III | TCNNGA | 9 cut(s) | 32, 115, 167, 548, 575, 1360, 1525, 2017, 2251 |
| Hpy8I | GTNNAC | 7 cut(s) | 254, 311, 500, 717, 742, 936, 1633 |
| HpyAV | CCTTC | 9 cut(s) | 185, 573, 967, 1060, 1182, 1292, 1522, 1604, 2086 |
| HpyCH4III | ACNGT | 5 cut(s) | 225, 746, 1558, 1637, 1676 |
| HpyCH4IV | ACGT | 1 cut(s) | 597 |
| HpySE526I | ACGT | 1 cut(s) | 597 |
| Hsp92I | GRCGYC | 1 cut(s) | 597 |
| Hsp92II | CATG | 9 cut(s) | 143, 277, 578, 623, 934, 981, 1441, 1495, 1554 |
| HspAI | GCGC | 2 cut(s) | 1012, 1103 |
| KpnI | GGTACC | 1 cut(s) | 1458 |
| KroI | GCCGGC | 1 cut(s) | 1648 |
| KroNI | GCCGGC | 1 cut(s) | 1650 |
| Kzo9I | GATC | 7 cut(s) | 14, 605, 1639, 1942, 2035, 2168, 2190 |
| LguI | GCTCTTC | 1 cut(s) | 1526 |
| LmnI | GCTCC | 4 cut(s) | 624, 982, 990, 2377 |
| Lsp1109I | GCAGC | 9 cut(s) | 503, 801, 1033, 1112, 1406, 1561, 1772, 1775, 2375 |
| MabI | ACCWGGT | 1 cut(s) | 1896 |
| MaeI | CTAG | 3 cut(s) | 1121, 1664, 1712 |
| MaeII | ACGT | 1 cut(s) | 597 |
| MaeIII | GTNAC | 2 cut(s) | 1738, 1854 |
| MalI | GATC | 7 cut(s) | 16, 607, 1641, 1944, 2037, 2170, 2192 |
| MboI | GATC | 7 cut(s) | 14, 605, 1639, 1942, 2035, 2168, 2190 |
| MfeI | CAATTG | 1 cut(s) | 2347 |
| MflI | RGATCY | 1 cut(s) | 2035 |
| MhlI | GDGCHC | 6 cut(s) | 256, 313, 629, 987, 1635, 2016 |
| MlsI | TGGCCA | 1 cut(s) | 56 |
| MluNI | TGGCCA | 1 cut(s) | 56 |
| MlyI | GAGTC | 4 cut(s) | 505, 581, 666, 1916 |
| MmeI | TCCRAC | 2 cut(s) | 227, 1420 |
| Mox20I | TGGCCA | 1 cut(s) | 56 |
| MroNI | GCCGGC | 1 cut(s) | 1648 |
| MscI | TGGCCA | 1 cut(s) | 56 |
| MseI | TTAA | 6 cut(s) | 11, 393, 684, 902, 1275, 1332 |
| MslI | CAYNNNNRTG | 4 cut(s) | 278, 372, 514, 573 |
| Msp20I | TGGCCA | 1 cut(s) | 56 |
| MspA1I | CMGCKG | 1 cut(s) | 2366 |
| MspR9I | CCNGG | 5 cut(s) | 1343, 1708, 1718, 1790, 1898 |
| MunI | CAATTG | 1 cut(s) | 2347 |
| Mva1269I | GAATGC | 1 cut(s) | 2131 |
| MvaI | CCWGG | 2 cut(s) | 1708, 1898 |
| MvnI | CGCG | 2 cut(s) | 1105, 1931 |
| NaeI | GCCGGC | 1 cut(s) | 1650 |
| NciI | CCSGG | 3 cut(s) | 1343, 1718, 1790 |
| NcoI | CCATGG | 2 cut(s) | 273, 1550 |
| NdeII | GATC | 7 cut(s) | 14, 605, 1639, 1942, 2035, 2168, 2190 |
| NgoMIV | GCCGGC | 1 cut(s) | 1648 |
| NlaIII | CATG | 9 cut(s) | 143, 277, 578, 623, 934, 981, 1441, 1495, 1554 |
| NlaIV | GGNNCC | 2 cut(s) | 804, 1456 |
| NmeAIII | GCCGAG | 1 cut(s) | 238 |
| NmuCI | GTSAC | 1 cut(s) | 1738 |
| NspI | RCATGY | 1 cut(s) | 934 |
| PagI | TCATGA | 1 cut(s) | 574 |
| PceI | AGGCCT | 1 cut(s) | 1326 |
| PciI | ACATGT | 1 cut(s) | 930 |
| PciSI | GCTCTTC | 1 cut(s) | 1526 |
| PctI | GAATGC | 1 cut(s) | 2131 |
| PdiI | GCCGGC | 1 cut(s) | 1650 |
| PfeI | GAWTC | 5 cut(s) | 246, 794, 1861, 2086, 2385 |
| PleI | GAGTC | 4 cut(s) | 504, 581, 666, 1915 |
| PpsI | GAGTC | 4 cut(s) | 504, 581, 666, 1915 |
| PscI | ACATGT | 1 cut(s) | 930 |
| PsiI | TTATAA | 1 cut(s) | 1320 |
| Psp124BI | GAGCTC | 3 cut(s) | 629, 987, 2016 |
| Psp6I | CCWGG | 2 cut(s) | 1706, 1896 |
| PspGI | CCWGG | 2 cut(s) | 1706, 1896 |
| PspN4I | GGNNCC | 2 cut(s) | 804, 1456 |
| PspPI | GGNCC | 5 cut(s) | 41, 283, 803, 1310, 2065 |
| PstI | CTGCAG | 2 cut(s) | 1579, 1951 |
| PstNI | CAGNNNCTG | 1 cut(s) | 590 |
| PsuI | RGATCY | 1 cut(s) | 2035 |
| PvuII | CAGCTG | 1 cut(s) | 2366 |
| RsaI | GTAC | 7 cut(s) | 432, 935, 1456, 1490, 1771, 1924, 2225 |
| RsaNI | GTAC | 7 cut(s) | 431, 934, 1455, 1489, 1770, 1923, 2224 |
| RseI | CAYNNNNRTG | 4 cut(s) | 278, 372, 514, 573 |
| SacI | GAGCTC | 3 cut(s) | 629, 987, 2016 |
| SapI | GCTCTTC | 1 cut(s) | 1526 |
| SaqAI | TTAA | 6 cut(s) | 11, 393, 684, 902, 1275, 1332 |
| Sau3AI | GATC | 7 cut(s) | 14, 605, 1639, 1942, 2035, 2168, 2190 |
| Sau96I | GGNCC | 5 cut(s) | 41, 283, 803, 1310, 2065 |
| ScaI | AGTACT | 1 cut(s) | 2225 |
| SchI | GAGTC | 4 cut(s) | 505, 581, 666, 1916 |
| ScrFI | CCNGG | 5 cut(s) | 1343, 1708, 1718, 1790, 1898 |
| SduI | GDGCHC | 6 cut(s) | 256, 313, 629, 987, 1635, 2016 |
| SexAI | ACCWGGT | 1 cut(s) | 1896 |
| SfcI | CTRYAG | 3 cut(s) | 601, 1575, 1947 |
| SinI | GGWCC | 3 cut(s) | 283, 1310, 2065 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 278, 372, 514, 573 |
| SmlI | CTYRAG | 4 cut(s) | 546, 628, 1360, 1643 |
| SmoI | CTYRAG | 4 cut(s) | 546, 628, 1360, 1643 |
| SseBI | AGGCCT | 1 cut(s) | 1326 |
| SsiI | CCGC | 7 cut(s) | 1089, 1105, 1750, 1931, 2215, 2358, 2361 |
| SspI | AATATT | 2 cut(s) | 349, 776 |
| SspMI | CTAG | 3 cut(s) | 1121, 1664, 1712 |
| SstI | GAGCTC | 3 cut(s) | 629, 987, 2016 |
| StuI | AGGCCT | 1 cut(s) | 1326 |
| StyD4I | CCNGG | 5 cut(s) | 1341, 1706, 1716, 1788, 1896 |
| StyI | CCWWGG | 5 cut(s) | 48, 273, 1167, 1550, 1839 |
| TaaI | ACNGT | 5 cut(s) | 225, 746, 1558, 1637, 1676 |
| TaiI | ACGT | 1 cut(s) | 600 |
| TaqI | TCGA | 3 cut(s) | 60, 241, 2125 |
| TatI | WGTACW | 3 cut(s) | 933, 1488, 2223 |
| TauI | GCSGC | 3 cut(s) | 1091, 2218, 2363 |
| TfiI | GAWTC | 5 cut(s) | 246, 794, 1861, 2086, 2385 |
| Tru1I | TTAA | 6 cut(s) | 11, 393, 684, 902, 1275, 1332 |
| Tru9I | TTAA | 6 cut(s) | 11, 393, 684, 902, 1275, 1332 |
| TscAI | CASTG | 3 cut(s) | 516, 1594, 1956 |
| TseFI | GTSAC | 1 cut(s) | 1738 |
| TseI | GCWGC | 9 cut(s) | 491, 789, 1046, 1100, 1419, 1574, 1760, 1763, 2363 |
| Tsp45I | GTSAC | 1 cut(s) | 1738 |
| TspDTI | ATGAA | 5 cut(s) | 128, 308, 722, 753, 2388 |
| TspGWI | ACGGA | 2 cut(s) | 1515, 1550 |
| TspRI | CASTG | 3 cut(s) | 516, 1594, 1956 |
| VneI | GTGCAC | 3 cut(s) | 252, 309, 1631 |
| VpaK11BI | GGWCC | 3 cut(s) | 283, 1310, 2065 |
| XapI | RAATTY | 2 cut(s) | 389, 721 |
| XceI | RCATGY | 1 cut(s) | 934 |
| XspI | CTAG | 3 cut(s) | 1121, 1664, 1712 |
| ZraI | GACGTC | 1 cut(s) | 598 |
| ZrmI | AGTACT | 1 cut(s) | 2225 |