Rh2AG439300

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015666
Physical Location & Seq
Reverse (-)
65005250 .. 65009013
3764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG439300.1

Sequence Viewer

Length: 1782 bp
ATGGCGTTTCTCAGATCATCTTCAGTTGCTCAGGACACCGGCCCAACCTTGGTGGCCATCGACAAAGATAAACACAGCCACTTTGCAGTCAAATGGGCAGTTGATAATCTGATCAAGACCTCCAAGTGCATCCTCATTCATGTTAGAAACAAAAGCTTGCATCCTCAGGATGCTGCTGCAATCCCCAAAGAAGGTCGCCCTCCAACTGAAGCCGAGTTGCAACAGTTCTTTCTTCCCTATCGAGGATTCTGTGCACGAAAAGGGATTATAGCCATGGAAGTGGTCCTCCACGACATTGATGTTCCAAGCGCACTTGTTCATTATATTATTCACAACGCCATCTCCAATATTGTCGTTGGTGCTTCCCATCGCAATGCTCTTACAAGAAAATTTAAAGACTTTGATGTGCCAAGTAGCCTACTCAAATATGTACCAGATACCTGTGCAGTATATGTTATATCATCAAAAGGAAGACTTCAGGCTAAACGGGCAGCAAGTCAACCTCAAACACCGAAATGTGATGCAGAGCCTCTCAGGGATACTTCTCAAGAAAACCATCTTCCTTCCCATCCTCATGATGGTTCAGACTCTGAAGACATCCCTAGATCACAATTTAGTCATGGGAGCTCAAGTTCAAAAAGTGCCTCCTCAGACAGAATATCTTTTGATAGACTCTCTGACTTTAAACCGATAACTCCCCATAAAATGAAAAGGTCAACAAATTCACCAACATTGTCAGTTGACAGTTCGGCATCAGAAACTTCATCCCATCGATATTCACTCTCAGGCAGCGATTCCTCGGGGCCACTTAGCTCCCAATCAAATGGCTCAGATAATGAGGGTAACAAGAACTCTCTATCCTCACAAACTCAATCTGGCTTGGATGGTGAGATGATGAGATTAAGGCAGGAATTGAAGCAAACAATGGACATGTACACTTCAGCTTGCAAAGAAGCTTTAGCATCTAAGCAGAAGGTTGAGGTTCTAAGCTGCATTAGACATCCACACATGGTTCTCTTAGTAGGTACCTGCCCTGAGTATGGATGCCTTGTATATGAGTACATGGAAAACGGAAGCTTAGAAGACCGGCTCTTCCAGAAGGACAACACGCCTCCAATCCCATGGACTGTCCGTTTCAAAATAGCTGCAGAAATTGCCACTGGCCTTCTTTTTCTTCACCAGACAAAACCAGAACCCATTGTGCACCGTGATCTCAAGCCGGCAAACATTCTCCTAGACCGGAACTGTGTGAGCAAGATTGCTGATGTAGGCTTATCCAGGCTAGTCCCGGCATCTGTGGCTGATAGTGTCACTCAATACCGCCTGACAGCAGCAGCCGGTACATTTTGCTACATTGACCCGGAGTATCAGAAAACAGGAATGTTGGGTGTGAAATCAGACATATATTCCTTGGGAATTATGCTGTTACAGATTCTTACATCAAAGCCTGCAATGGCATTGTCCCACCAGGTTGAGGAGTCCATTGAGAAAGGTACATTCGCCGAGTTGCTTGATCCTGCAGTGCCAGACTGGCCTGTTGAAGAGGCTTTGTCATTAGCAAAACTGGCTTTGAAGTGCTGTGAGCTCAGGAGGAGAGATAGACCGGATCTTGGTTCAGTCATCTTGCCTGAGCTGGACCGGCTAAGAGAGTTTGGGAATCAGAAGGAAGCCAATAACTATGCCATCGTTCCCTATCGAGGGCATTCACACGCATCACTTCCACCAGTACCAGTAGGGAGATCAACCACAAATGCCAGTCAGGTTAGTTTCTCTGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0009507 GO:0009536 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr Usp

Protein Analysis

593

Amino Acids

65.21

Weight (kDa)

7.31

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 17 - 129 5.9e-07 Universal stress protein family
PK_Tyr_Ser-Thr PF07714 320 - 539 7.4e-29 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 324 - 536 7.9e-30 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015666)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34160 FvH4_6g34160
malus_domestica MD09G1188100.v1.1
prunus_persica Prupe.3G045000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0144481
rosa_laevigata RLG00000020084
rosa_multiflora Rmu_sc0005789.1_g000009 Rmu_sc0005789.1_g000011 Rmu_sc0007240.1_g000006
rosa_roxburghii Rroxscaffold_2G00101260
rosa_rugosa Rorug02G0386900
rosa_samantha Rh2AG439300 Rh2BG449500 Rh2CG426300 Rh2DG459300
rosa_wichuraiana Rw2G035940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1037
Acc65I GGTACC 1 cut(s) 1025
AccB1I GGYRCC 1 cut(s) 1025
AciI CCGC 1 cut(s) 1321
AclWI GGATC 2 cut(s) 1508, 1614
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 389, 721
AcuI CTGAAG 5 cut(s) 6, 228, 461, 612, 924
AfaI GTAC 7 cut(s) 432, 935, 1027, 1061, 1342, 1495, 1728
AfiI CCNNNNNNNGG 9 cut(s) 49, 191, 242, 578, 1040, 1474, 1610, 1697, 1698
AflIII ACRYGT 1 cut(s) 930
AgsI TTSAA 5 cut(s) 636, 916, 1138, 1541, 1573
AjnI CCWGG 2 cut(s) 1277, 1467
AloI GAACNNNNNNTCC 4 cut(s) 616, 648, 842, 874
Alw21I GWGCWC 4 cut(s) 256, 629, 1206, 1587
Alw44I GTGCAC 2 cut(s) 252, 1202
AlwI GGATC 2 cut(s) 1508, 1614
AlwNI CAGNNNCTG 1 cut(s) 590
Ama87I CYCGRG 1 cut(s) 799
AoxI GGCC 5 cut(s) 40, 54, 803, 1162, 1532
ApaLI GTGCAC 2 cut(s) 252, 1202
ApeKI GCWGC 8 cut(s) 173, 176, 491, 789, 990, 1145, 1331, 1334
ApoI RAATTY 2 cut(s) 389, 721
Asp718I GGTACC 1 cut(s) 1025
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 4 cut(s) 41, 283, 803, 1636
AsuC2I CCSGG 2 cut(s) 1289, 1361
AsuHPI GGTGA 3 cut(s) 717, 899, 1169
AvaI CYCGRG 1 cut(s) 799
AvaII GGWCC 2 cut(s) 283, 1636
AxyI CCTNAGG 1 cut(s) 165
BaeGI GKGCMC 2 cut(s) 256, 1206
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 1025
BanII GRGCYC 2 cut(s) 629, 1587
BbsI GAAGAC 3 cut(s) 478, 600, 1089
Bbv12I GWGCWC 4 cut(s) 256, 629, 1206, 1587
BbvI GCAGC 8 cut(s) 160, 163, 503, 801, 977, 1132, 1343, 1346
BccI CCATC 9 cut(s) 65, 347, 375, 564, 572, 576, 777, 878, 1691
BciT130I CCWGG 2 cut(s) 1279, 1469
BciVI GTATCC 1 cut(s) 532
BclI TGATCA 1 cut(s) 111
BcnI CCSGG 2 cut(s) 1289, 1361
BfaI CTAG 3 cut(s) 603, 1235, 1283
BfmI CTRYAG 3 cut(s) 1146, 1518, 1773
BfuAI ACCTGC 1 cut(s) 1037
BfuI GTATCC 1 cut(s) 532
BglI GCCNNNNNGGC 1 cut(s) 1531
BisI GCNGC 8 cut(s) 174, 177, 492, 790, 991, 1146, 1332, 1335
BlsI GCNGC 8 cut(s) 175, 178, 493, 791, 992, 1147, 1333, 1336
Bme1390I CCNGG 4 cut(s) 1279, 1289, 1361, 1469
Bme18I GGWCC 2 cut(s) 283, 1636
BmeT110I CYCGRG 1 cut(s) 799
BmgT120I GGNCC 4 cut(s) 41, 283, 803, 1636
BmiI GGNNCC 2 cut(s) 804, 1027
BmrFI CCNGG 4 cut(s) 1279, 1289, 1361, 1469
BmsI GCATC 9 cut(s) 138, 160, 169, 511, 761, 971, 1034, 1301, 1721
BpiI GAAGAC 3 cut(s) 478, 600, 1089
Bpu10I CCTNAGC 3 cut(s) 30, 1586, 1629
BpuEI CTTGAG 3 cut(s) 531, 613, 1199
BpuMI CCSGG 2 cut(s) 1289, 1361
Bsa29I ATCGAT 1 cut(s) 772
BsaJI CCNNGG 5 cut(s) 48, 273, 798, 1121, 1410
BsaWI WCCGGW 2 cut(s) 1239, 1603
BsaXI ACNNNNNCTCC 4 cut(s) 326, 356, 616, 646
Bsc4I CCNNNNNNNGG 9 cut(s) 49, 191, 242, 578, 1040, 1474, 1610, 1697, 1698
Bse118I RCCGGY 5 cut(s) 38, 1086, 1219, 1337, 1638
Bse1I ACTGG 6 cut(s) 1165, 1535, 1569, 1724, 1730, 1755
Bse21I CCTNAGG 1 cut(s) 165
Bse3DI GCAATG 2 cut(s) 379, 1458
BseBI CCWGG 2 cut(s) 1279, 1469
BseCI ATCGAT 1 cut(s) 772
BseDI CCNNGG 5 cut(s) 48, 273, 798, 1121, 1410
BseGI GGATG 9 cut(s) 129, 160, 175, 568, 597, 764, 889, 1000, 1049
BseLI CCNNNNNNNGG 9 cut(s) 49, 191, 242, 578, 1040, 1474, 1610, 1697, 1698
BseMI GCAATG 2 cut(s) 379, 1458
BseNI ACTGG 6 cut(s) 1165, 1535, 1569, 1724, 1730, 1755
BseRI GAGGAG 3 cut(s) 637, 1490, 1606
BseSI GKGCMC 2 cut(s) 256, 1206
BseXI GCAGC 8 cut(s) 160, 163, 503, 801, 977, 1132, 1343, 1346
BsgI GTGCAG 1 cut(s) 465
BshFI GGCC 5 cut(s) 42, 56, 805, 1164, 1534
BshNI GGYRCC 1 cut(s) 1025
BshVI ATCGAT 1 cut(s) 772
BsiHKAI GWGCWC 4 cut(s) 256, 629, 1206, 1587
BsiHKCI CYCGRG 1 cut(s) 799
BsiSI CCGG 9 cut(s) 39, 1087, 1220, 1240, 1289, 1338, 1361, 1604, 1639
BslFI GGGAC 2 cut(s) 1271, 1447
BslI CCNNNNNNNGG 9 cut(s) 49, 191, 242, 578, 1040, 1474, 1610, 1697, 1698
BsmFI GGGAC 2 cut(s) 1271, 1447
BsmI GAATGC 1 cut(s) 1702
BsnI GGCC 5 cut(s) 42, 56, 805, 1164, 1534
BsoBI CYCGRG 1 cut(s) 799
Bsp1286I GDGCHC 4 cut(s) 256, 629, 1206, 1587
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 7 cut(s) 14, 111, 605, 1210, 1513, 1606, 1739
Bsp19I CCATGG 2 cut(s) 273, 1121
BspACI CCGC 1 cut(s) 1321
BspANI GGCC 5 cut(s) 42, 56, 805, 1164, 1534
BspDI ATCGAT 1 cut(s) 772
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 2 cut(s) 804, 1027
BspMAI CTGCAG 3 cut(s) 1150, 1522, 1777
BspMI ACCTGC 1 cut(s) 1037
BspPI GGATC 2 cut(s) 1508, 1614
BspQI GCTCTTC 1 cut(s) 1097
BspT107I GGYRCC 1 cut(s) 1025
BsrDI GCAATG 2 cut(s) 379, 1458
BsrFI RCCGGY 5 cut(s) 38, 1086, 1219, 1337, 1638
BsrGI TGTACA 1 cut(s) 933
BsrI ACTGG 6 cut(s) 1165, 1535, 1569, 1724, 1730, 1755
BssAI RCCGGY 5 cut(s) 38, 1086, 1219, 1337, 1638
BssECI CCNNGG 5 cut(s) 48, 273, 798, 1121, 1410
BssMI GATC 7 cut(s) 14, 111, 605, 1210, 1513, 1606, 1739
BssT1I CCWWGG 4 cut(s) 48, 273, 1121, 1410
Bst2UI CCWGG 2 cut(s) 1279, 1469
Bst4CI ACNGT 5 cut(s) 225, 746, 1129, 1208, 1247
Bst6I CTCTTC 2 cut(s) 1097, 1536
BstAPI GCANNNNNTGC 1 cut(s) 1154
BstAUI TGTACA 1 cut(s) 933
BstC8I GCNNGC 4 cut(s) 158, 946, 1221, 1449
BstDSI CCRYGG 2 cut(s) 273, 1121
BstF5I GGATG 9 cut(s) 129, 160, 175, 568, 597, 764, 889, 1000, 1049
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 7 cut(s) 17, 114, 608, 1213, 1516, 1609, 1742
BstMBI GATC 7 cut(s) 14, 111, 605, 1210, 1513, 1606, 1739
BstMWI GCNNNNNNNGC 6 cut(s) 488, 1154, 1298, 1531, 1565, 1639
BstNI CCWGG 2 cut(s) 1279, 1469
BstNSI RCATGY 1 cut(s) 934
BstSCI CCNGG 4 cut(s) 1277, 1287, 1359, 1467
BstSFI CTRYAG 3 cut(s) 1146, 1518, 1773
BstSLI GKGCMC 2 cut(s) 256, 1206
BstV1I GCAGC 8 cut(s) 160, 163, 503, 801, 977, 1132, 1343, 1346
BstV2I GAAGAC 3 cut(s) 478, 600, 1089
BstX2I RGATCY 1 cut(s) 1606
BstXI CCANNNNNNTGG 3 cut(s) 280, 824, 1122
BstYI RGATCY 1 cut(s) 1606
Bsu15I ATCGAT 1 cut(s) 772
Bsu36I CCTNAGG 1 cut(s) 165
BsuI GTATCC 1 cut(s) 532
BsuRI GGCC 5 cut(s) 42, 56, 805, 1164, 1534
BsuTUI ATCGAT 1 cut(s) 772
BtgI CCRYGG 2 cut(s) 273, 1121
BtgZI GCGATG 1 cut(s) 353
BtsCI GGATG 9 cut(s) 129, 160, 175, 568, 597, 764, 889, 1000, 1049
BtsI GCAGTG 1 cut(s) 1527
BtsIMutI CAGTG 2 cut(s) 1158, 1527
BveI ACCTGC 1 cut(s) 1037
Cac8I GCNNGC 4 cut(s) 158, 946, 1221, 1449
CaiI CAGNNNCTG 1 cut(s) 590
CciI TCATGA 1 cut(s) 574
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 5 cut(s) 38, 1086, 1219, 1337, 1638
Cfr13I GGNCC 4 cut(s) 41, 283, 803, 1636
ClaI ATCGAT 1 cut(s) 772
CsiI ACCWGGT 1 cut(s) 1467
Csp6I GTAC 7 cut(s) 431, 934, 1026, 1060, 1341, 1494, 1727
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviAII CATG 8 cut(s) 140, 274, 575, 620, 931, 1009, 1063, 1122
CviQI GTAC 7 cut(s) 431, 934, 1026, 1060, 1341, 1494, 1727
DpnI GATC 7 cut(s) 16, 113, 607, 1212, 1515, 1608, 1741
DpnII GATC 7 cut(s) 14, 111, 605, 1210, 1513, 1606, 1739
DraI TTTAAA 2 cut(s) 394, 685
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 2 cut(s) 1097, 1536
EarI CTCTTC 2 cut(s) 1097, 1536
Ecl136II GAGCTC 2 cut(s) 627, 1585
Eco130I CCWWGG 4 cut(s) 48, 273, 1121, 1410
Eco24I GRGCYC 2 cut(s) 629, 1587
Eco47I GGWCC 2 cut(s) 283, 1636
Eco53kI GAGCTC 2 cut(s) 627, 1585
Eco57I CTGAAG 5 cut(s) 6, 228, 461, 612, 924
Eco81I CCTNAGG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 799
EcoICRI GAGCTC 2 cut(s) 627, 1585
EcoRII CCWGG 2 cut(s) 1277, 1467
EcoT14I CCWWGG 4 cut(s) 48, 273, 1121, 1410
EcoT38I GRGCYC 2 cut(s) 629, 1587
ErhI CCWWGG 4 cut(s) 48, 273, 1121, 1410
FaeI CATG 8 cut(s) 143, 277, 578, 623, 934, 1012, 1066, 1125
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 2 cut(s) 1271, 1447
FatI CATG 8 cut(s) 139, 273, 574, 619, 930, 1008, 1062, 1121
FbaI TGATCA 1 cut(s) 111
Fnu4HI GCNGC 8 cut(s) 174, 177, 492, 790, 991, 1146, 1332, 1335
FokI GGATG 9 cut(s) 116, 147, 182, 555, 584, 751, 896, 987, 1056
FriOI GRGCYC 2 cut(s) 629, 1587
Fsp4HI GCNGC 8 cut(s) 174, 177, 492, 790, 991, 1146, 1332, 1335
FspBI CTAG 3 cut(s) 603, 1235, 1283
GlaI GCGC 1 cut(s) 310
GluI GCNGC 8 cut(s) 174, 177, 492, 790, 991, 1146, 1332, 1335
HaeIII GGCC 5 cut(s) 42, 56, 805, 1164, 1534
HapII CCGG 9 cut(s) 39, 1087, 1220, 1240, 1289, 1338, 1361, 1604, 1639
HhaI GCGC 1 cut(s) 311
Hin1II CATG 8 cut(s) 143, 277, 578, 623, 934, 1012, 1066, 1125
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HincII GTYRAC 3 cut(s) 500, 717, 742
HindII GTYRAC 3 cut(s) 500, 717, 742
HindIII AAGCTT 3 cut(s) 154, 954, 1075
HinfI GANTC 7 cut(s) 246, 587, 672, 794, 1432, 1478, 1657
HpaII CCGG 9 cut(s) 39, 1087, 1220, 1240, 1289, 1338, 1361, 1604, 1639
HphI GGTGA 3 cut(s) 717, 899, 1169
Hpy166II GTNNAC 6 cut(s) 254, 500, 717, 742, 936, 1204
Hpy188III TCNNGA 7 cut(s) 32, 115, 167, 548, 575, 1096, 1588
Hpy8I GTNNAC 6 cut(s) 254, 500, 717, 742, 936, 1204
HpyAV CCTTC 6 cut(s) 185, 573, 967, 1093, 1175, 1657
HpyCH4III ACNGT 5 cut(s) 225, 746, 1129, 1208, 1247
HpyF10VI GCNNNNNNNGC 6 cut(s) 488, 1154, 1298, 1531, 1565, 1639
Hsp92II CATG 8 cut(s) 143, 277, 578, 623, 934, 1012, 1066, 1125
HspAI GCGC 1 cut(s) 309
KpnI GGTACC 1 cut(s) 1029
KroI GCCGGC 1 cut(s) 1219
KroNI GCCGGC 1 cut(s) 1221
Ksp22I TGATCA 1 cut(s) 111
Kzo9I GATC 7 cut(s) 14, 111, 605, 1210, 1513, 1606, 1739
LguI GCTCTTC 1 cut(s) 1097
LmnI GCTCC 2 cut(s) 624, 818
Lsp1109I GCAGC 8 cut(s) 160, 163, 503, 801, 977, 1132, 1343, 1346
LweI GCATC 9 cut(s) 138, 160, 169, 511, 761, 971, 1034, 1301, 1721
MabI ACCWGGT 1 cut(s) 1467
MaeI CTAG 3 cut(s) 603, 1235, 1283
MaeIII GTNAC 3 cut(s) 842, 1309, 1425
MalI GATC 7 cut(s) 16, 113, 607, 1212, 1515, 1608, 1741
MboI GATC 7 cut(s) 14, 111, 605, 1210, 1513, 1606, 1739
MboII GAAGA 9 cut(s) 12, 224, 483, 551, 605, 1084, 1094, 1166, 1553
MflI RGATCY 1 cut(s) 1606
MhlI GDGCHC 4 cut(s) 256, 629, 1206, 1587
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 6 cut(s) 389, 611, 721, 911, 1152, 1416
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 3 cut(s) 581, 666, 1487
MmeI TCCRAC 1 cut(s) 227
Mox20I TGGCCA 1 cut(s) 56
MroNI GCCGGC 1 cut(s) 1219
MscI TGGCCA 1 cut(s) 56
MseI TTAA 3 cut(s) 393, 684, 902
MslI CAYNNNNRTG 4 cut(s) 278, 372, 514, 573
Msp20I TGGCCA 1 cut(s) 56
MspI CCGG 9 cut(s) 39, 1087, 1220, 1240, 1289, 1338, 1361, 1604, 1639
MspR9I CCNGG 4 cut(s) 1279, 1289, 1361, 1469
Mva1269I GAATGC 1 cut(s) 1702
MvaI CCWGG 2 cut(s) 1279, 1469
MwoI GCNNNNNNNGC 6 cut(s) 488, 1154, 1298, 1531, 1565, 1639
NaeI GCCGGC 1 cut(s) 1221
NciI CCSGG 2 cut(s) 1289, 1361
NcoI CCATGG 2 cut(s) 273, 1121
NdeII GATC 7 cut(s) 14, 111, 605, 1210, 1513, 1606, 1739
NgoMIV GCCGGC 1 cut(s) 1219
NlaIII CATG 8 cut(s) 143, 277, 578, 623, 934, 1012, 1066, 1125
NlaIV GGNNCC 2 cut(s) 804, 1027
NmeAIII GCCGAG 2 cut(s) 238, 1528
NmuCI GTSAC 1 cut(s) 1309
NspI RCATGY 1 cut(s) 934
PagI TCATGA 1 cut(s) 574
PciI ACATGT 1 cut(s) 930
PciSI GCTCTTC 1 cut(s) 1097
PctI GAATGC 1 cut(s) 1702
PdiI GCCGGC 1 cut(s) 1221
PfeI GAWTC 4 cut(s) 246, 794, 1432, 1657
PkrI GCNGC 8 cut(s) 175, 178, 493, 791, 992, 1147, 1333, 1336
PleI GAGTC 3 cut(s) 581, 666, 1486
PpsI GAGTC 3 cut(s) 581, 666, 1486
PscI ACATGT 1 cut(s) 930
Psp124BI GAGCTC 2 cut(s) 629, 1587
Psp6I CCWGG 2 cut(s) 1277, 1467
PspGI CCWGG 2 cut(s) 1277, 1467
PspN4I GGNNCC 2 cut(s) 804, 1027
PspPI GGNCC 4 cut(s) 41, 283, 803, 1636
PstI CTGCAG 3 cut(s) 1150, 1522, 1777
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 1 cut(s) 1606
RsaI GTAC 7 cut(s) 432, 935, 1027, 1061, 1342, 1495, 1728
RsaNI GTAC 7 cut(s) 431, 934, 1026, 1060, 1341, 1494, 1727
RseI CAYNNNNRTG 4 cut(s) 278, 372, 514, 573
SacI GAGCTC 2 cut(s) 629, 1587
SapI GCTCTTC 1 cut(s) 1097
SaqAI TTAA 3 cut(s) 393, 684, 902
SatI GCNGC 8 cut(s) 174, 177, 492, 790, 991, 1146, 1332, 1335
Sau3AI GATC 7 cut(s) 14, 111, 605, 1210, 1513, 1606, 1739
Sau96I GGNCC 4 cut(s) 41, 283, 803, 1636
SchI GAGTC 3 cut(s) 581, 666, 1487
ScrFI CCNGG 4 cut(s) 1279, 1289, 1361, 1469
SduI GDGCHC 4 cut(s) 256, 629, 1206, 1587
SexAI ACCWGGT 1 cut(s) 1467
SfaNI GCATC 9 cut(s) 138, 160, 169, 511, 761, 971, 1034, 1301, 1721
SfcI CTRYAG 3 cut(s) 1146, 1518, 1773
SinI GGWCC 2 cut(s) 283, 1636
SmiMI CAYNNNNRTG 4 cut(s) 278, 372, 514, 573
SmlI CTYRAG 3 cut(s) 546, 628, 1214
SmoI CTYRAG 3 cut(s) 546, 628, 1214
Sse9I AATT 6 cut(s) 389, 611, 721, 911, 1152, 1416
SsiI CCGC 1 cut(s) 1321
SspI AATATT 1 cut(s) 349
SspMI CTAG 3 cut(s) 603, 1235, 1283
SstI GAGCTC 2 cut(s) 629, 1587
StyD4I CCNGG 4 cut(s) 1277, 1287, 1359, 1467
StyI CCWWGG 4 cut(s) 48, 273, 1121, 1410
TaaI ACNGT 5 cut(s) 225, 746, 1129, 1208, 1247
TaqI TCGA 4 cut(s) 60, 241, 772, 1696
TasI AATT 6 cut(s) 389, 611, 721, 911, 1152, 1416
TatI WGTACW 2 cut(s) 933, 1059
TfiI GAWTC 4 cut(s) 246, 794, 1432, 1657
Tru1I TTAA 3 cut(s) 393, 684, 902
Tru9I TTAA 3 cut(s) 393, 684, 902
TscAI CASTG 2 cut(s) 1165, 1527
TseFI GTSAC 1 cut(s) 1309
TseI GCWGC 8 cut(s) 173, 176, 491, 789, 990, 1145, 1331, 1334
Tsp45I GTSAC 1 cut(s) 1309
TspDTI ATGAA 4 cut(s) 128, 308, 722, 753
TspGWI ACGGA 2 cut(s) 1086, 1121
TspRI CASTG 2 cut(s) 1165, 1527
VneI GTGCAC 2 cut(s) 252, 1202
VpaK11BI GGWCC 2 cut(s) 283, 1636
XapI RAATTY 2 cut(s) 389, 721
XceI RCATGY 1 cut(s) 934
XcmI CCANNNNNNNNNTGG 1 cut(s) 575
XspI CTAG 3 cut(s) 603, 1235, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.