RLG00000020739

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019277
Physical Location & Seq
Forward (+)
68107547 .. 68108452
906 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020739

Sequence Viewer

Length: 651 bp
ATGTCGAGGTACAATATTGTCGATCTCACAAATCAGTTTCTGGGATCTCCCAAGCTCCTGGAGAACTACAAACCCGATGATATGTTGTTTAACTTCACCCTGGAGGCAGTGAAGACCATACATAAAGCTTCTGATGTTGTTCTTCCTACTTTTAATGCCCTGGAGCCACAAGTTTTGGAAGCCCTCTCATCCATGCTTCGTCCACATGTTTATGCCATTGGCCCTCTCCAGTTACTCCTTAATCAGATACCACAACAACCTTTAGAGATTACCGGATACAGTCTATGGAAAGAAGAAACCGAATGCCTCCAATGGCTTAACTCCAAGGCACCAAATTCAGTTGTTTATGTTGACTTTGGCAGTTTGGCGAACAACACACAAATAAGTGGTGTGCTTGCAATAAATGGGGCATCGGGATGGAGATTAGTGATGACGCGCGTGAAGAGAGAAGAAGTACAAAGCCTTGTCAAGGAGTTAATGGAGGGAAAGAAGGGTAAGGAAACGAAAAACAAGTCTATGGAGTGGAAGACACTTGCAGAAGACGCTACTGCTCCACATGGTTCTTCATCCTCAAACTTAGACAACTTAGTGAATCAACTGCGAGTCCGCGACCACGGGAGATGCTATAAAATATCCTCTATATATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

217

Amino Acids

24.31

Weight (kDa)

6.91

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019277)

Species Orthologous Gene IDs
malus_domestica MD09G1142600.v1.1
pyrus_communis pycom17g11750
rosa_chinensis RchiOBHm_Chr2g0153931
rosa_laevigata RLG00000020739 RLG00000020767
rosa_multiflora Rmu_co8139412.1_g000001 Rmu_sc0025169.1_g000002
rosa_samantha Rh2BG517100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccII CGCG 3 cut(s) 436, 438, 609
AciI CCGC 1 cut(s) 607
AclWI GGATC 1 cut(s) 52
AcsI RAATTY 1 cut(s) 334
AfaI GTAC 2 cut(s) 11, 456
AfiI CCNNNNNNNGG 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 205
AjnI CCWGG 3 cut(s) 57, 99, 159
AluBI AGCT 2 cut(s) 55, 128
AluI AGCT 2 cut(s) 55, 128
AlwI GGATC 1 cut(s) 52
AlwNI CAGNNNCTG 1 cut(s) 40
AoxI GGCC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 334
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 88
BanI GGYRCC 1 cut(s) 328
BbsI GAAGAC 3 cut(s) 119, 533, 546
BccI CCATC 1 cut(s) 411
BciT130I CCWGG 3 cut(s) 59, 101, 161
BciVI GTATCC 1 cut(s) 269
BfuI GTATCC 1 cut(s) 269
Bme1390I CCNGG 3 cut(s) 59, 101, 161
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 2 cut(s) 165, 330
BmrFI CCNGG 3 cut(s) 59, 101, 161
BmsI GCATC 2 cut(s) 419, 611
BpiI GAAGAC 3 cut(s) 119, 533, 546
BpmI CTGGAG 4 cut(s) 80, 122, 182, 212
BsaJI CCNNGG 4 cut(s) 99, 159, 324, 613
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 3 cut(s) 59, 101, 161
BseDI CCNNGG 4 cut(s) 99, 159, 324, 613
BseGI GGATG 3 cut(s) 188, 422, 566
BseLI CCNNNNNNNGG 1 cut(s) 469
BseNI ACTGG 1 cut(s) 229
Bsh1236I CGCG 3 cut(s) 436, 438, 609
BshFI GGCC 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 469
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 22, 44
BspACI CCGC 1 cut(s) 607
BspANI GGCC 1 cut(s) 222
BspFNI CGCG 3 cut(s) 436, 438, 609
BspLI GGNNCC 2 cut(s) 165, 330
BspPI GGATC 1 cut(s) 52
BspT107I GGYRCC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 4 cut(s) 99, 159, 324, 613
BssMI GATC 2 cut(s) 22, 44
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 3 cut(s) 59, 101, 161
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 577, 586
BstDSI CCRYGG 1 cut(s) 613
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 3 cut(s) 188, 422, 566
BstFNI CGCG 3 cut(s) 436, 438, 609
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 2 cut(s) 25, 47
BstMBI GATC 2 cut(s) 22, 44
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstNI CCWGG 3 cut(s) 59, 101, 161
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 3 cut(s) 57, 99, 159
BstUI CGCG 3 cut(s) 436, 438, 609
BstV2I GAAGAC 3 cut(s) 119, 533, 546
BstX2I RGATCY 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 1 cut(s) 44
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 613
BtsCI GGATG 3 cut(s) 188, 422, 566
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 396
CaiI CAGNNNCTG 1 cut(s) 40
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 2 cut(s) 442, 551
Csp6I GTAC 2 cut(s) 10, 455
CspCI CAANNNNNGTGG 2 cut(s) 156, 191
CviAII CATG 3 cut(s) 193, 206, 557
CviJI RGCY 7 cut(s) 55, 128, 166, 182, 222, 316, 462
CviKI_1 RGCY 7 cut(s) 55, 128, 166, 182, 222, 316, 462
CviQI GTAC 2 cut(s) 10, 455
DdeI CTNAG 2 cut(s) 577, 586
DpnI GATC 2 cut(s) 24, 46
DpnII GATC 2 cut(s) 22, 44
Eam1104I CTCTTC 1 cut(s) 437
EarI CTCTTC 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 324
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoRII CCWGG 3 cut(s) 57, 99, 159
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 3 cut(s) 196, 209, 560
FatI CATG 3 cut(s) 192, 205, 556
FokI GGATG 3 cut(s) 175, 429, 553
GlaI GCGC 1 cut(s) 437
GsuI CTGGAG 4 cut(s) 80, 122, 182, 212
HaeIII GGCC 1 cut(s) 222
HapII CCGG 1 cut(s) 273
HgaI GACGC 2 cut(s) 442, 551
HhaI GCGC 1 cut(s) 438
Hin1II CATG 3 cut(s) 196, 209, 560
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 2 cut(s) 592, 603
HpaII CCGG 1 cut(s) 273
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 203, 352
Hpy188I TCNGA 2 cut(s) 133, 246
Hpy188III TCNNGA 1 cut(s) 414
Hpy8I GTNNAC 2 cut(s) 203, 352
HpyAV CCTTC 1 cut(s) 484
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 398, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpyF3I CTNAG 2 cut(s) 577, 586
Hsp92II CATG 3 cut(s) 196, 209, 560
HspAI GCGC 1 cut(s) 436
Kzo9I GATC 2 cut(s) 22, 44
LmnI GCTCC 3 cut(s) 60, 163, 556
LpnPI CCDG 9 cut(s) 26, 44, 71, 86, 113, 146, 173, 242, 286
LweI GCATC 2 cut(s) 419, 611
MaeIII GTNAC 1 cut(s) 231
MalI GATC 2 cut(s) 24, 46
MboI GATC 2 cut(s) 22, 44
MboII GAAGA 8 cut(s) 124, 134, 305, 454, 461, 538, 551, 555
MflI RGATCY 1 cut(s) 44
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 612
MnlI CCTC 7 cut(s) 97, 194, 234, 317, 475, 580, 646
MseI TTAA 5 cut(s) 90, 153, 240, 318, 476
MslI CAYNNNNRTG 2 cut(s) 210, 415
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 3 cut(s) 59, 101, 161
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 3 cut(s) 59, 101, 161
MvnI CGCG 3 cut(s) 436, 438, 609
MwoI GCNNNNNNNGC 1 cut(s) 542
NdeII GATC 2 cut(s) 22, 44
NlaIII CATG 3 cut(s) 196, 209, 560
NlaIV GGNNCC 2 cut(s) 165, 330
NspI RCATGY 1 cut(s) 209
PciI ACATGT 1 cut(s) 205
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 592
PfoI TCCNGGA 1 cut(s) 57
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
PscI ACATGT 1 cut(s) 205
Psp6I CCWGG 3 cut(s) 57, 99, 159
PspGI CCWGG 3 cut(s) 57, 99, 159
PspN4I GGNNCC 2 cut(s) 165, 330
PspPI GGNCC 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 2 cut(s) 11, 456
RsaNI GTAC 2 cut(s) 10, 455
RseI CAYNNNNRTG 2 cut(s) 210, 415
SaqAI TTAA 5 cut(s) 90, 153, 240, 318, 476
Sau3AI GATC 2 cut(s) 22, 44
Sau96I GGNCC 1 cut(s) 221
SchI GAGTC 1 cut(s) 612
ScrFI CCNGG 3 cut(s) 59, 101, 161
SetI ASST 4 cut(s) 11, 57, 130, 262
SfaNI GCATC 2 cut(s) 419, 611
SmiMI CAYNNNNRTG 2 cut(s) 210, 415
Sse9I AATT 1 cut(s) 334
SsiI CCGC 1 cut(s) 607
SspI AATATT 1 cut(s) 16
StyD4I CCNGG 3 cut(s) 57, 99, 159
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 2 cut(s) 5, 21
TasI AATT 1 cut(s) 334
TatI WGTACW 1 cut(s) 454
TfiI GAWTC 1 cut(s) 592
Tru1I TTAA 5 cut(s) 90, 153, 240, 318, 476
Tru9I TTAA 5 cut(s) 90, 153, 240, 318, 476
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 555
TspRI CASTG 1 cut(s) 114
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 1 cut(s) 334
XceI RCATGY 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.