Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0019277

Physical Location & Seq

Genomic Coordinates Forward (+)

68558145 .. 68558804

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAACTATAAAATACTTCCCACTTTGGTGGAAAAAGGATTTGCACCACTCAGAGAGTTAACAAATGAATTTTTGGACACGATAATAGACTGGGTTCCGGGAGTGAAAGACATCCATTTAAGGGATCTCTCAGGCTCATGGAGAACCACAAACCCCGATGACCTCTTGATTAACTTGGCCTTAGAAGCAGTGGAGGGAGCTCATAAAGCTTCAGTAGTTGTTGTTCATACTTTTAAGGCGTTGGAGCCAGATGCTTTGGAAGCTCTCTCCAGCACTGCATCTATGCTTCCACCGGTGTACGCCATTGGCCCTCTCCAATTACTTCTCAATCAGATACCGGAACACCCTTTGAAGTCTGTGGGATATAGTTTACGAAAGGAAGAAACTGAGTGCCTCCAATGGCTAAATGATAAGGCACCAAACTCAGTTCTGTATGTGAACTTCGGTAGTTTAGTGGTCATGACACCACAACATCTTATGGAGTTTGCTTGGGGACTTGCAAATAGCAAGCTTCCCTTCCTGTGGGTTATTAGACCAGATTTGGTTGTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

185

Amino Acids

20.51

Weight (kDa)

5.15

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019277)

Species	Orthologous Gene IDs
malus_domestica	MD09G1142600.v1.1
pyrus_communis	pycom17g11750
rosa_chinensis	RchiOBHm_Chr2g0153931
rosa_laevigata	RLG00000020739 RLG00000020767
rosa_multiflora	Rmu_co8139412.1_g000001 Rmu_sc0025169.1_g000002
rosa_samantha	Rh2BG517100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	415
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	121, 522
AgeI	ACCGGT	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	352
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	200, 209, 263, 511
AluI	AGCT	4 cut(s)	200, 209, 263, 511
Alw21I	GWGCWC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	132
AoxI	GGCC	2 cut(s)	177, 307
ApoI	RAATTY	1 cut(s)	68
AsiGI	ACCGGT	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	202
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
Bbv12I	GWGCWC	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	308
BmiI	GGNNCC	3 cut(s)	96, 246, 417
BmrFI	CCNGG	1 cut(s)	99
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	2 cut(s)	241, 287
BmuI	ACTGGG	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	99
BsaWI	WCCGGW	2 cut(s)	292, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	121, 522
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	121, 522
BseMII	CTCAG	4 cut(s)	64, 144, 378, 438
BseNI	ACTGG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	179, 309
BshNI	GGYRCC	1 cut(s)	415
BshTI	ACCGGT	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	3 cut(s)	98, 293, 338
BslFI	GGGAC	1 cut(s)	507
BslI	CCNNNNNNNGG	2 cut(s)	121, 522
BsmFI	GGGAC	1 cut(s)	507
BsnI	GGCC	2 cut(s)	179, 309
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	179, 309
BspCNI	CTCAG	4 cut(s)	63, 143, 379, 437
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	3 cut(s)	96, 246, 417
BspPI	GGATC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	415
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	292
BssMI	GATC	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	5 cut(s)	50, 130, 181, 387, 424
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 206, 260
BstSCI	CCNGG	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	179, 309
BtsCI	GGATG	1 cut(s)	111
BtsI	GCAGTG	2 cut(s)	195, 273
BtsIMutI	CAGTG	2 cut(s)	195, 273
Cac8I	GCNNGC	1 cut(s)	509
CciI	TCATGA	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	298
CspAI	ACCGGT	1 cut(s)	292
CviAII	CATG	2 cut(s)	138, 460
CviJI	RGCY	9 cut(s)	135, 179, 200, 209, 247, 263, 309, 403, 511
CviKI_1	RGCY	9 cut(s)	135, 179, 200, 209, 247, 263, 309, 403, 511
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	5 cut(s)	50, 130, 181, 387, 424
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	195
EcoICRI	GAGCTC	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	2 cut(s)	141, 463
FaiI	YATR	9 cut(s)	9, 139, 204, 228, 284, 366, 435, 461, 479
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	507
FatI	CATG	2 cut(s)	137, 459
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	202
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	2 cut(s)	179, 309
HapII	CCGG	3 cut(s)	98, 293, 338
Hin1II	CATG	2 cut(s)	141, 463
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	2 cut(s)	207, 509
HpaI	GTTAAC	1 cut(s)	60
HpaII	CCGG	3 cut(s)	98, 293, 338
Hpy166II	GTNNAC	4 cut(s)	60, 298, 371, 439
Hpy188I	TCNGA	2 cut(s)	53, 333
Hpy188III	TCNNGA	2 cut(s)	166, 460
Hpy8I	GTNNAC	4 cut(s)	60, 298, 371, 439
HpyAV	CCTTC	1 cut(s)	526
HpyCH4V	TGCA	3 cut(s)	44, 278, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 206, 260
HpyF3I	CTNAG	5 cut(s)	50, 130, 181, 387, 424
Hsp92II	CATG	2 cut(s)	141, 463
KspAI	GTTAAC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	197, 244
LpnPI	CCDG	9 cut(s)	76, 111, 117, 261, 283, 306, 351, 533, 549
LweI	GCATC	2 cut(s)	241, 287
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	392
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	2 cut(s)	68, 317
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	4 cut(s)	173, 187, 321, 404
MseI	TTAA	4 cut(s)	59, 119, 171, 234
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	3 cut(s)	98, 293, 338
MspR9I	CCNGG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	185, 206, 260
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	141, 463
NlaIV	GGNNCC	3 cut(s)	96, 246, 417
OliI	CACNNNNGTG	1 cut(s)	26
PagI	TCATGA	1 cut(s)	459
PfoI	TCCNGGA	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	202
PspN4I	GGNNCC	3 cut(s)	96, 246, 417
PspPI	GGNCC	1 cut(s)	308
PsrI	GAACNNNNNNTAC	2 cut(s)	207, 239
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	202
SaqAI	TTAA	4 cut(s)	59, 119, 171, 234
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	308
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	5 cut(s)	165, 202, 211, 265, 513
SfaNI	GCATC	2 cut(s)	241, 287
SgrAI	CRCCGGYG	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	68, 317
SstI	GAGCTC	1 cut(s)	202
StyD4I	CCNGG	1 cut(s)	97
TasI	AATT	2 cut(s)	68, 317
Tru1I	TTAA	4 cut(s)	59, 119, 171, 234
Tru9I	TTAA	4 cut(s)	59, 119, 171, 234
TscAI	CASTG	2 cut(s)	195, 280
TspDTI	ATGAA	3 cut(s)	17, 81, 215
TspRI	CASTG	2 cut(s)	195, 280
XapI	RAATTY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.