Rmu_co8139412.1_g000001

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8139412.1
OG0019277
Physical Location & Seq
Reverse (-)
2 .. 639
638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8139412.1_g000001.1.cds

Sequence Viewer

Length: 532 bp
gaatcttccggtgactagcattgtctcggatggcttcctgacattcaccatcacagttgccaaagaacttggaattcctattgcacagttctttaccgtggccgcagttggattaatgagcttcaaagtaattcccactttggtggagaaaggatttgcaccccgcaaagatgcgagctgtataacaaatgactttttggacacggtaatagactgggttccgggactgaaagatatccgtttaagggatcttccaggtagctggaaaactacaaaccccgatgacatcgtgtttaacttcaccttagaagcagtggagggagcgcataaagcttcagcagttattgttcatacttttgaggcgttggagccagatgttttggaagctctctccagcactacatctatgcttccacctgtttatgccattggccctctccaattacttctcaatcagataccggaacaccttttgaagtctgtgggatacagtttacggaaagaagaaactgagtgcctccaatggcttaat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

177

Amino Acids

19.43

Weight (kDa)

4.77

Isoelectric Point (pI)

27.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019277)

Species Orthologous Gene IDs
malus_domestica MD09G1142600.v1.1
pyrus_communis pycom17g11750
rosa_chinensis RchiOBHm_Chr2g0153931
rosa_laevigata RLG00000020739 RLG00000020767
rosa_multiflora Rmu_co8139412.1_g000001 Rmu_sc0025169.1_g000002
rosa_samantha Rh2BG517100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 103, 164
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 73
AcuI CTGAAG 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 245
AgsI TTSAA 2 cut(s) 125, 476
AjnI CCWGG 1 cut(s) 254
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 5 cut(s) 121, 178, 262, 333, 387
AluI AGCT 5 cut(s) 121, 178, 262, 333, 387
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 1 cut(s) 256
AoxI GGCC 2 cut(s) 100, 431
ApoI RAATTY 1 cut(s) 73
AseI ATTAAT 1 cut(s) 114
AspLEI GCGC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 432
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 23, 38, 293
BccI CCATC 2 cut(s) 24, 57
BciT130I CCWGG 1 cut(s) 256
BciVI GTATCC 1 cut(s) 480
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 16
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
Bme1390I CCNGG 2 cut(s) 223, 256
BmgT120I GGNCC 1 cut(s) 432
BmiI GGNNCC 2 cut(s) 220, 370
BmrFI CCNGG 2 cut(s) 223, 256
BmrI ACTGGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 161
BmuI ACTGGG 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 223
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 2 cut(s) 8, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 502
BseNI ACTGG 1 cut(s) 219
BshFI GGCC 2 cut(s) 102, 433
BsiSI CCGG 3 cut(s) 9, 222, 462
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 2 cut(s) 102, 433
Bsp143I GATC 1 cut(s) 248
BspACI CCGC 2 cut(s) 103, 164
BspANI GGCC 2 cut(s) 102, 433
BspCNI CTCAG 1 cut(s) 503
BspLI GGNNCC 2 cut(s) 220, 370
BspPI GGATC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 248
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 5 cut(s) 56, 88, 98, 206, 492
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 305, 511
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 326
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 221, 254
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 2 cut(s) 143, 262
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 2 cut(s) 102, 433
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 35
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 176
CfoI GCGC 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 432
DdeI CTNAG 2 cut(s) 305, 511
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 100
Eco32I GATATC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 254
EcoRV GATATC 1 cut(s) 236
FaiI YATR 5 cut(s) 183, 328, 352, 408, 424
FaqI GGGAC 1 cut(s) 238
FauI CCCGC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 103
FspBI CTAG 1 cut(s) 16
GlaI GCGC 1 cut(s) 325
GluI GCNGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 377
HaeIII GGCC 2 cut(s) 102, 433
HapII CCGG 3 cut(s) 9, 222, 462
HhaI GCGC 1 cut(s) 326
Hin6I GCGC 1 cut(s) 324
HinP1I GCGC 1 cut(s) 324
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 1 cut(s) 2
HpaII CCGG 3 cut(s) 9, 222, 462
HphI GGTGA 3 cut(s) 23, 38, 293
Hpy166II GTNNAC 1 cut(s) 495
Hpy188I TCNGA 2 cut(s) 29, 457
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 495
HpyCH4III ACNGT 5 cut(s) 56, 88, 98, 206, 492
HpyCH4V TGCA 2 cut(s) 84, 159
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 2 cut(s) 305, 511
HspAI GCGC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 248
LmnI GCTCC 2 cut(s) 321, 368
LweI GCATC 1 cut(s) 161
MaeI CTAG 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 11
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 2 cut(s) 243, 516
MflI RGATCY 1 cut(s) 248
MluCI AATT 3 cut(s) 73, 130, 441
MmeI TCCRAC 2 cut(s) 89, 346
MnlI CCTC 4 cut(s) 311, 353, 445, 528
MseI TTAA 4 cut(s) 114, 243, 295, 529
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 3 cut(s) 9, 222, 462
MspR9I CCNGG 2 cut(s) 223, 256
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 330
NciI CCSGG 1 cut(s) 223
NdeII GATC 1 cut(s) 248
NlaIV GGNNCC 2 cut(s) 220, 370
NmuCI GTSAC 1 cut(s) 11
OliI CACNNNNGTG 1 cut(s) 141
PfeI GAWTC 1 cut(s) 2
PfoI TCCNGGA 1 cut(s) 221
PkrI GCNGC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 220, 370
PspPI GGNCC 1 cut(s) 432
PsuI RGATCY 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 4 cut(s) 114, 243, 295, 529
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 1 cut(s) 248
Sau96I GGNCC 1 cut(s) 432
ScrFI CCNGG 2 cut(s) 223, 256
SetI ASST 9 cut(s) 123, 180, 260, 264, 306, 335, 389, 419, 472
SfaNI GCATC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 3 cut(s) 73, 130, 441
SsiI CCGC 2 cut(s) 103, 164
SspMI CTAG 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 221, 254
TaaI ACNGT 5 cut(s) 56, 88, 98, 206, 492
TasI AATT 3 cut(s) 73, 130, 441
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 2
Tru1I TTAA 4 cut(s) 114, 243, 295, 529
Tru9I TTAA 4 cut(s) 114, 243, 295, 529
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 339
TspGWI ACGGA 2 cut(s) 228, 512
TspRI CASTG 1 cut(s) 319
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 1 cut(s) 73
XspI CTAG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.