RLG00000020892

Transcriptional regulator STERILE

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
69861342 .. 69866388
5047 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020892

Sequence Viewer

Length: 1380 bp
ATGTCTTCTTCTTCATCATCATCACCATCATCTTCATCGCCTTCCACATCTCAATTTGATAGTGGCAATGCGGCTGGTACTAGCACCGTACGACAAAGAAGGGGTGATTTTGAAGGGCCATCATCTTCGAGACAACGTGCCGTCAGTGAGGTCTGGCCGGAGCCTTTCCTCGAAGCCCTCGCGGCCCAAGTCGCCATTGCCGCTTCTCGCAACATTGGCCGCCTCGCCGCAGCTGCTGCACTCTCCAATGTCTTCCAGGTCTGCTCCACGTGGCGCGCCGTATCCCGCTCGGACCTGCTCTGGCGACGGCTCACTCGCCGGATTTGGGGCCGGACTCGCCTCCTCCAGAACACGTGGCGCGAGGAGTACGTCTACTGGCACCGTACGGCTAGAAACTTCCGGACACCGAGGTATGCTCACACGATACTCTACTTTGACCCGTCTGACGTGGACGATCCGGATGGACTGACTTGCCGGTGCCTGACTCTCTCCGACAACTACCTCGCCTGCGGCTTCGCGGACGGCGCCGTCAGACTCTTCGACCTCGCCACGCGCCTCCACGTCAGCACGTACCGGCCCCACCACCGCGACAGGTTGGGCCGATTTTCCCGGGCCGTTACGGGGATCGTCATCAGCAATTCTCGGCTCACTTTCGCCACCCTGGACGGGGACATCCACGTGGCCGCCGTGCCCGGCCCTCCAATCACGCGGAGGGCCCACTTAGGCCAAGTGGTGAACGACGGCGTGTTGGTGGACTTTACCGGCTGCGGGAGGTGGTGGGTGGGTCTGTACGCCGGCGTTCCGGGTGGGGCCATCCACATCTGGGACAGTAACACCGAAGAGCTCGTCTTCAGGGGCGGGGAGTTGACCGAGCCGGAAGCGGTGGTGGGCTGGCACATGCTGACCGAGATGACCGGGTTCGTGGGCCGGGTCCGGGTGACGACCCAACAAACCGCGGTGGCGTGCACGAGCGCGCGAGTCATCGTCTTCGATTTGCGGAACCCAGGAGAGGTGCTGGCGGAGGAGCAGTACAGAAGGGGAATCGTCGTGACGGCGACGGACGTCAGCGACGCGGCGTACGTTATCGTCGGAAACAGGGGACTGGCTAGGGTGCGCCGGGCGGACACGTCGGAGGAGCTGTGCAGGTTCATGGTGAGAGGCGCCGGGCAGATGGGGGCGATGGGTTGCATGAACGGCGGGTACGCGCTGATGTGCGCCGGAGGGGCGATTAGGGTTTGGGAGGTGGAGCGGGGCGAGTTCCTGTACACTTTCAGGGAGCGCGTGGGGGCGGTCAACGCTTTTGTCTGCGACGAACGACATGTCGCGGCGTGGGGTAGTGATGCGACACTGCACCTGTGGGACTTCGGGGGTCAGGAGTAG

Protein Analysis

460

Amino Acids

50.58

Weight (kDa)

8.35

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014528)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 527
AatII GACGTC 1 cut(s) 1065
Acc36I ACCTGC 2 cut(s) 303, 1134
AccB1I GGYRCC 4 cut(s) 378, 477, 524, 1160
AccBSI CCGCTC 2 cut(s) 288, 1249
AccI GTMKAC 1 cut(s) 372
AccIII TCCGGA 2 cut(s) 399, 457
AclWI GGATC 2 cut(s) 449, 632
AcoI YGGCCR 3 cut(s) 155, 217, 681
AcuI CTGAAG 1 cut(s) 835
AcvI CACGTG 3 cut(s) 270, 354, 679
AcyI GRCGYC 3 cut(s) 525, 1062, 1161
AfiI CCNNNNNNNGG 8 cut(s) 325, 621, 666, 667, 768, 823, 934, 1009
AflIII ACRYGT 3 cut(s) 351, 1125, 1318
AgsI TTSAA 1 cut(s) 113
AjiI CACGTC 3 cut(s) 448, 562, 1128
AjnI CCWGG 3 cut(s) 255, 660, 1003
AluBI AGCT 3 cut(s) 233, 844, 1138
AluI AGCT 3 cut(s) 233, 844, 1138
Alw21I GWGCWC 2 cut(s) 846, 968
Alw26I GTCTC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 964
AlwI GGATC 2 cut(s) 449, 632
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 609
Aor13HI TCCGGA 2 cut(s) 399, 457
ApaI GGGCCC 1 cut(s) 718
ApaLI GTGCAC 1 cut(s) 964
ApeKI GCWGC 4 cut(s) 230, 233, 236, 765
ArsI GACNNNNNNTTYG 4 cut(s) 831, 863, 1305, 1337
AscI GGCGCGCC 1 cut(s) 274
AsuC2I CCSGG 9 cut(s) 610, 611, 693, 804, 916, 929, 935, 1118, 1165
AsuHPI GGTGA 5 cut(s) 15, 116, 745, 949, 1165
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 2 cut(s) 292, 931
BaeGI GKGCMC 3 cut(s) 693, 718, 968
BanI GGYRCC 4 cut(s) 378, 477, 524, 1160
BanII GRGCYC 2 cut(s) 718, 846
BauI CACGAG 1 cut(s) 967
BbrPI CACGTG 3 cut(s) 270, 354, 679
BbsI GAAGAC 3 cut(s) 244, 841, 979
Bbv12I GWGCWC 2 cut(s) 846, 968
BbvI GCAGC 4 cut(s) 220, 223, 242, 752
BccI CCATC 6 cut(s) 34, 127, 455, 821, 1165, 1174
BciT130I CCWGG 3 cut(s) 257, 662, 1005
BciVI GTATCC 1 cut(s) 292
BcnI CCSGG 9 cut(s) 610, 611, 693, 804, 916, 929, 935, 1118, 1165
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 3 cut(s) 81, 390, 1107
BfoI RGCGCY 2 cut(s) 528, 1164
BfuAI ACCTGC 2 cut(s) 303, 1134
BfuI GTATCC 1 cut(s) 292
BglI GCCNNNNNGGC 2 cut(s) 182, 1223
Bme18I GGWCC 2 cut(s) 292, 931
BmeT110I CYCGRG 1 cut(s) 609
BmgBI CACGTC 3 cut(s) 448, 562, 1128
BmsI GCATC 1 cut(s) 1330
BoxI GACNNNNGTC 1 cut(s) 1061
BpiI GAAGAC 3 cut(s) 244, 841, 979
BplI GAGNNNNNCTC 2 cut(s) 400, 432
BpmI CTGGAG 1 cut(s) 329
BpuMI CCSGG 9 cut(s) 610, 611, 693, 804, 916, 929, 935, 1118, 1165
BsaAI YACGTR 4 cut(s) 270, 354, 570, 679
BsaBI GATNNNNATC 1 cut(s) 629
BsaHI GRCGYC 3 cut(s) 525, 1062, 1161
BsaJI CCNNGG 5 cut(s) 407, 609, 660, 954, 1003
BsaWI WCCGGW 2 cut(s) 399, 457
BsaXI ACNNNNNCTCC 4 cut(s) 1013, 1043, 1124, 1154
Bsc4I CCNNNNNNNGG 8 cut(s) 325, 621, 666, 667, 768, 823, 934, 1009
Bse118I RCCGGY 4 cut(s) 474, 573, 761, 794
Bse1I ACTGG 2 cut(s) 380, 1107
Bse3DI GCAATG 2 cut(s) 73, 195
Bse8I GATNNNNATC 1 cut(s) 629
BseAI TCCGGA 2 cut(s) 399, 457
BseBI CCWGG 3 cut(s) 257, 662, 1005
BseDI CCNNGG 5 cut(s) 407, 609, 660, 954, 1003
BseGI GGATG 3 cut(s) 466, 672, 813
BseJI GATNNNNATC 1 cut(s) 629
BseLI CCNNNNNNNGG 8 cut(s) 325, 621, 666, 667, 768, 823, 934, 1009
BseMI GCAATG 2 cut(s) 73, 195
BseNI ACTGG 2 cut(s) 380, 1107
BsePI GCGCGC 2 cut(s) 274, 972
BseRI GAGGAG 4 cut(s) 332, 377, 1037, 1148
BseSI GKGCMC 3 cut(s) 693, 718, 968
BseXI GCAGC 4 cut(s) 220, 223, 242, 752
BsgI GTGCAG 3 cut(s) 222, 1162, 1334
BshNI GGYRCC 4 cut(s) 378, 477, 524, 1160
BsiHKAI GWGCWC 2 cut(s) 846, 968
BsiHKCI CYCGRG 1 cut(s) 609
BsiWI CGTACG 3 cut(s) 88, 383, 1077
BslFI GGGAC 4 cut(s) 683, 839, 1113, 1373
BslI CCNNNNNNNGG 8 cut(s) 325, 621, 666, 667, 768, 823, 934, 1009
BsmAI GTCTC 1 cut(s) 124
BsmFI GGGAC 4 cut(s) 683, 839, 1113, 1373
BsoBI CYCGRG 1 cut(s) 609
Bsp120I GGGCCC 1 cut(s) 714
Bsp1286I GDGCHC 4 cut(s) 693, 718, 846, 968
Bsp13I TCCGGA 2 cut(s) 399, 457
Bsp1407I TGTACA 1 cut(s) 1263
Bsp143I GATC 2 cut(s) 454, 624
BspEI TCCGGA 2 cut(s) 399, 457
BspMI ACCTGC 2 cut(s) 303, 1134
BspPI GGATC 2 cut(s) 449, 632
BspQI GCTCTTC 1 cut(s) 834
BspT107I GGYRCC 4 cut(s) 378, 477, 524, 1160
BsrBI CCGCTC 2 cut(s) 288, 1249
BsrDI GCAATG 2 cut(s) 73, 195
BsrFI RCCGGY 4 cut(s) 474, 573, 761, 794
BsrGI TGTACA 1 cut(s) 1263
BsrI ACTGG 2 cut(s) 380, 1107
BssAI RCCGGY 4 cut(s) 474, 573, 761, 794
BssECI CCNNGG 5 cut(s) 407, 609, 660, 954, 1003
BssHII GCGCGC 2 cut(s) 274, 972
BssMI GATC 2 cut(s) 454, 624
BssNI GRCGYC 3 cut(s) 525, 1062, 1161
BssSI CACGAG 1 cut(s) 967
Bst2BI CACGAG 1 cut(s) 967
Bst2UI CCWGG 3 cut(s) 257, 662, 1005
Bst4CI ACNGT 3 cut(s) 88, 383, 830
Bst6I CTCTTC 2 cut(s) 542, 834
BstACI GRCGYC 3 cut(s) 525, 1062, 1161
BstAPI GCANNNNNTGC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 1263
BstBAI YACGTR 4 cut(s) 270, 354, 570, 679
BstC8I GCNNGC 7 cut(s) 276, 508, 796, 893, 964, 974, 1017
BstDEI CTNAG 1 cut(s) 721
BstDSI CCRYGG 1 cut(s) 954
BstF5I GGATG 3 cut(s) 466, 672, 813
BstH2I RGCGCY 2 cut(s) 528, 1164
BstKTI GATC 2 cut(s) 457, 627
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 2 cut(s) 454, 624
BstNI CCWGG 3 cut(s) 257, 662, 1005
BstNSI RCATGY 2 cut(s) 901, 1322
BstPAI GACNNNNGTC 1 cut(s) 1061
BstSLI GKGCMC 3 cut(s) 693, 718, 968
BstV1I GCAGC 4 cut(s) 220, 223, 242, 752
BstV2I GAAGAC 3 cut(s) 244, 841, 979
BsuI GTATCC 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 954
BtgZI GCGATG 2 cut(s) 21, 1193
BtrI CACGTC 3 cut(s) 448, 562, 1128
BtsCI GGATG 3 cut(s) 466, 672, 813
BtsI GCAGTG 1 cut(s) 1346
BtsIMutI CAGTG 2 cut(s) 151, 1346
BveI ACCTGC 2 cut(s) 303, 1134
Cac8I GCNNGC 7 cut(s) 276, 508, 796, 893, 964, 974, 1017
CaiI CAGNNNCTG 1 cut(s) 236
Cfr10I RCCGGY 4 cut(s) 474, 573, 761, 794
Cfr42I CCGCGG 1 cut(s) 957
Cfr9I CCCGGG 1 cut(s) 609
CseI GACGC 1 cut(s) 1079
CviAII CATG 4 cut(s) 898, 1150, 1189, 1319
DdeI CTNAG 1 cut(s) 721
DinI GGCGCC 2 cut(s) 526, 1162
DpnI GATC 2 cut(s) 456, 626
DpnII GATC 2 cut(s) 454, 624
DrdI GACNNNNNNGTC 1 cut(s) 527
DseDI GACNNNNNNGTC 1 cut(s) 527
EaeI YGGCCR 3 cut(s) 155, 217, 681
Eam1104I CTCTTC 2 cut(s) 542, 834
EarI CTCTTC 2 cut(s) 542, 834
EciI GGCGGA 2 cut(s) 1034, 1136
Ecl136II GAGCTC 1 cut(s) 844
Eco24I GRGCYC 2 cut(s) 718, 846
Eco47I GGWCC 2 cut(s) 292, 931
Eco53kI GAGCTC 1 cut(s) 844
Eco57I CTGAAG 1 cut(s) 835
Eco72I CACGTG 3 cut(s) 270, 354, 679
Eco88I CYCGRG 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 844
EcoO109I RGGNCCY 1 cut(s) 714
EcoRII CCWGG 3 cut(s) 255, 660, 1003
EcoT38I GRGCYC 2 cut(s) 718, 846
EgeI GGCGCC 2 cut(s) 526, 1162
EheI GGCGCC 2 cut(s) 526, 1162
FaeI CATG 4 cut(s) 901, 1153, 1192, 1322
FaiI YATR 5 cut(s) 414, 899, 1151, 1190, 1320
FaqI GGGAC 4 cut(s) 683, 839, 1113, 1373
FatI CATG 4 cut(s) 897, 1149, 1188, 1318
FauI CCCGC 5 cut(s) 293, 761, 851, 1190, 1242
FblI GTMKAC 1 cut(s) 372
FokI GGATG 3 cut(s) 473, 659, 800
FriOI GRGCYC 2 cut(s) 718, 846
FspBI CTAG 3 cut(s) 81, 390, 1107
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 2 cut(s) 528, 1164
HgaI GACGC 1 cut(s) 1079
Hin1I GRCGYC 3 cut(s) 525, 1062, 1161
Hin1II CATG 4 cut(s) 901, 1153, 1192, 1322
HincII GTYRAC 2 cut(s) 867, 1294
HindII GTYRAC 2 cut(s) 867, 1294
HinfI GANTC 5 cut(s) 334, 484, 534, 978, 1041
HphI GGTGA 5 cut(s) 15, 116, 745, 949, 1165
Hpy166II GTNNAC 8 cut(s) 373, 451, 736, 754, 867, 966, 1266, 1294
Hpy188I TCNGA 6 cut(s) 292, 445, 493, 533, 1091, 1132
Hpy188III TCNNGA 6 cut(s) 129, 346, 400, 458, 1048, 1373
Hpy8I GTNNAC 8 cut(s) 373, 451, 736, 754, 867, 966, 1266, 1294
Hpy99I CGWCG 8 cut(s) 309, 743, 1049, 1060, 1073, 1091, 1132, 1313
HpyAV CCTTC 4 cut(s) 51, 93, 107, 1029
HpyCH4III ACNGT 3 cut(s) 88, 383, 830
HpyCH4V TGCA 5 cut(s) 239, 966, 1143, 1188, 1351
HpyF3I CTNAG 1 cut(s) 721
Hsp92I GRCGYC 3 cut(s) 525, 1062, 1161
Hsp92II CATG 4 cut(s) 901, 1153, 1192, 1322
KasI GGCGCC 2 cut(s) 524, 1160
Kpn2I TCCGGA 2 cut(s) 399, 457
KroI GCCGGC 1 cut(s) 794
KroNI GCCGGC 1 cut(s) 796
KspI CCGCGG 1 cut(s) 957
Kzo9I GATC 2 cut(s) 454, 624
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 6 cut(s) 160, 269, 1024, 1135, 1246, 1276
Lsp1109I GCAGC 4 cut(s) 220, 223, 242, 752
LweI GCATC 1 cut(s) 1330
MaeI CTAG 3 cut(s) 81, 390, 1107
MaeIII GTNAC 4 cut(s) 616, 830, 937, 1048
MalI GATC 2 cut(s) 456, 626
MbiI CCGCTC 2 cut(s) 288, 1249
MboI GATC 2 cut(s) 454, 624
MboII GAAGA 8 cut(s) 3, 24, 117, 244, 529, 841, 851, 979
MhlI GDGCHC 4 cut(s) 693, 718, 846, 968
MluCI AATT 2 cut(s) 53, 637
Mly113I GGCGCC 2 cut(s) 525, 1161
MlyI GAGTC 4 cut(s) 328, 478, 528, 987
MmeI TCCRAC 3 cut(s) 516, 1069, 1110
MreI CGCCGGCG 1 cut(s) 794
MroI TCCGGA 2 cut(s) 399, 457
MroNI GCCGGC 1 cut(s) 794
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 2 cut(s) 233, 956
MvaI CCWGG 3 cut(s) 257, 662, 1005
NaeI GCCGGC 1 cut(s) 796
NarI GGCGCC 2 cut(s) 525, 1161
NciI CCSGG 9 cut(s) 610, 611, 693, 804, 916, 929, 935, 1118, 1165
NdeII GATC 2 cut(s) 454, 624
NgoMIV GCCGGC 1 cut(s) 794
NlaIII CATG 4 cut(s) 901, 1153, 1192, 1322
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 2 cut(s) 937, 1048
NspI RCATGY 2 cut(s) 901, 1322
PalAI GGCGCGCC 1 cut(s) 274
PauI GCGCGC 2 cut(s) 274, 972
PciI ACATGT 1 cut(s) 1318
PciSI GCTCTTC 1 cut(s) 834
PcsI WCGNNNNNNNCGW 2 cut(s) 684, 1077
PdiI GCCGGC 1 cut(s) 796
PfeI GAWTC 1 cut(s) 1041
Pfl23II CGTACG 3 cut(s) 88, 383, 1077
PleI GAGTC 4 cut(s) 328, 478, 528, 986
PluTI GGCGCC 2 cut(s) 528, 1164
PmaCI CACGTG 3 cut(s) 270, 354, 679
PmlI CACGTG 3 cut(s) 270, 354, 679
PpsI GAGTC 4 cut(s) 328, 478, 528, 986
Ppu21I YACGTR 4 cut(s) 270, 354, 570, 679
PscI ACATGT 1 cut(s) 1318
PshAI GACNNNNGTC 1 cut(s) 1061
Psp124BI GAGCTC 1 cut(s) 846
Psp6I CCWGG 3 cut(s) 255, 660, 1003
PspCI CACGTG 3 cut(s) 270, 354, 679
PspGI CCWGG 3 cut(s) 255, 660, 1003
PspLI CGTACG 3 cut(s) 88, 383, 1077
PspOMI GGGCCC 1 cut(s) 714
PsrI GAACNNNNNNTAC 2 cut(s) 1184, 1216
PstNI CAGNNNCTG 1 cut(s) 236
PteI GCGCGC 2 cut(s) 274, 972
PvuII CAGCTG 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 1 cut(s) 846
SacII CCGCGG 1 cut(s) 957
SapI GCTCTTC 1 cut(s) 834
Sau3AI GATC 2 cut(s) 454, 624
SchI GAGTC 4 cut(s) 328, 478, 528, 987
SduI GDGCHC 4 cut(s) 693, 718, 846, 968
SfaNI GCATC 1 cut(s) 1330
SfoI GGCGCC 2 cut(s) 526, 1162
Sfr303I CCGCGG 1 cut(s) 957
SgrAI CRCCGGYG 1 cut(s) 794
SgrBI CCGCGG 1 cut(s) 957
SgsI GGCGCGCC 1 cut(s) 274
SinI GGWCC 2 cut(s) 292, 931
SmaI CCCGGG 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 677
Sse9I AATT 2 cut(s) 53, 637
SspDI GGCGCC 2 cut(s) 524, 1160
SspMI CTAG 3 cut(s) 81, 390, 1107
SstI GAGCTC 1 cut(s) 846
TaaI ACNGT 3 cut(s) 88, 383, 830
TaqI TCGA 4 cut(s) 128, 171, 540, 990
TaqII GACCGA 2 cut(s) 884, 920
TasI AATT 2 cut(s) 53, 637
TatI WGTACW 2 cut(s) 1029, 1263
TauI GCSGC 9 cut(s) 74, 185, 203, 222, 230, 513, 686, 1076, 1328
TfiI GAWTC 1 cut(s) 1041
TscAI CASTG 2 cut(s) 151, 1353
TseFI GTSAC 2 cut(s) 937, 1048
TseI GCWGC 4 cut(s) 230, 233, 236, 765
Tsp45I GTSAC 2 cut(s) 937, 1048
TspDTI ATGAA 3 cut(s) 24, 1138, 1205
TspGWI ACGGA 1 cut(s) 1073
TspMI CCCGGG 1 cut(s) 609
TspRI CASTG 2 cut(s) 151, 1353
VneI GTGCAC 1 cut(s) 964
VpaK11BI GGWCC 2 cut(s) 292, 931
XceI RCATGY 2 cut(s) 901, 1322
XmaI CCCGGG 1 cut(s) 609
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 3 cut(s) 81, 390, 1107
ZraI GACGTC 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.