Rw2G042720

Transcriptional regulator STERILE

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
69039693 .. 69044787
5095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042720.1

Sequence Viewer

Length: 1380 bp
ATGTCTTCTTCTTCATCATCATCACCATCATCTTCATCACCTTCCACATCTCAATTTGATAGTGGCAATGCGGCTGGTACTAGCACCGTACGACAAAGAAGGGGTGATTTTGAAGGGCCATCATCTTCGAGACGACGTGCCGTCAGTGAGGTCTGGCCGGAGCCTTTCCTCGAAGCCCTCGCGGCCCAAGTCGCCATTGCCGCTTCTCGCAACATTGGCCGCCTCGCCGCAGCTGCTGCACTCGCCAATGTCTTCCAGGTCTGCTCCACGTGGCGGGCCGTTTCCCGCTCGGACCTGCTCTGGCGCCGGCTCACTCGCCGGATTTGGGGCCGGACTCGCCTCCTCCAGGACACGTGGCGCGACGAGTACGTCTACTGGCATCGTACGGCTAGAAACTTCCGGACAAGGAGGTATGAGCACACGATACTCTACTTTGACCCGTCTGACGTGGACGATGCGGATGGACTGACTTGCCGGTGCCTGACTCTCTCCGACAACTACCTCGCCTGCGGCTTCGCGGACGGCGCAGTCCGACTCTTCGACCTCGCCACGCGCCTCCACGTCAGCACGTACCGGCCCCACCAGCGCGACAGGTTGGGCCGATTTTCCCGGGCCGTTACGGGGATCGTCATCAGCAATTCTCGGCTCACTTTCGCCACCCTGGACGGGGACATCCACGTGGCGGACGTGCCCGGCCCGCCAATCACGCGGAGGGCCCACTTAGGCGAAGTGATGAACGACGGCGTGTTGGTGGACTTCACCGGCTGCGGGAGGTGGTGGGTGGGTCTGTACGCCGGCGTTCCGCGTCGGGCCATCCACATCTGGGACAGTAACACCGAAGAGCTCGTCTTCGTGGGCGGGGAGTTGACCGAGCCGGAAGCGGTGGTGGGCTGGCACATGCTGACCGACATGACCGGGTTCGTGGGCCGGGTCCGGGTCACGACCCAAGAAACCGCCGTGGCGTGCACGAGCGCGCGAGTCATCGTCTTCGATTTGCGGAACGGAGGAGAGGTGCTGGCGGAGGAGCAGTACAGAAGAGGAATCGTCGTGACGGCGACCGACGTCAGCGACGCGGCGTACGTTGTCGTCGGAAACAGGGGACTGGCTAGGGTGCGGCGGGCGGACACGTCGGAGGAGCTGTGTAGGTTCACGGTGAGAGGCGCCGGGCAGATGGGGGCGATGGGTTGCATGAACGGCGGGTACGCGCTGATGTGCGCCGGCGGGGTGATTAGGGTTTGGGAGGTGGAGCGGGGCGAGGAGCTGTACACTTTCTGGGAGCGCGTGGGGGCAGTCAACGCTTTTGTCTGCGACGAACGACATGTCGTGGCGTGGGGCAGTGATGCGACACTGCACCTGTGGGACTTTGGTGGTCAGGAGTAG

Protein Analysis

459

Amino Acids

50.85

Weight (kDa)

6.81

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 406 - 459 6.5e-06 TEP-1 second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014528)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 368, 527
AatII GACGTC 1 cut(s) 1065
Acc36I ACCTGC 1 cut(s) 303
AccB1I GGYRCC 3 cut(s) 303, 477, 1160
AccBSI CCGCTC 2 cut(s) 288, 1249
AccI GTMKAC 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 399
AclWI GGATC 1 cut(s) 632
AcoI YGGCCR 2 cut(s) 155, 217
AcvI CACGTG 3 cut(s) 270, 354, 679
AcyI GRCGYC 3 cut(s) 304, 1062, 1161
AflIII ACRYGT 3 cut(s) 351, 1125, 1318
AgsI TTSAA 1 cut(s) 113
AhdI GACNNNNNGTC 1 cut(s) 140
AjiI CACGTC 5 cut(s) 137, 448, 562, 688, 1128
AjnI CCWGG 3 cut(s) 255, 345, 660
AluBI AGCT 4 cut(s) 233, 844, 1138, 1261
AluI AGCT 4 cut(s) 233, 844, 1138, 1261
Alw21I GWGCWC 3 cut(s) 420, 846, 968
Alw26I GTCTC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 964
AlwI GGATC 1 cut(s) 632
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 609
Aor13HI TCCGGA 1 cut(s) 399
ApaI GGGCCC 1 cut(s) 718
ApaLI GTGCAC 1 cut(s) 964
ApeKI GCWGC 4 cut(s) 230, 233, 236, 765
ArsI GACNNNNNNTTYG 4 cut(s) 831, 863, 1305, 1337
AsuC2I CCSGG 7 cut(s) 610, 611, 693, 916, 929, 935, 1165
AsuHPI GGTGA 6 cut(s) 15, 30, 116, 751, 1165, 1237
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 2 cut(s) 292, 931
BaeGI GKGCMC 3 cut(s) 693, 718, 968
BanI GGYRCC 3 cut(s) 303, 477, 1160
BanII GRGCYC 2 cut(s) 718, 846
BauI CACGAG 1 cut(s) 967
BbrPI CACGTG 3 cut(s) 270, 354, 679
BbsI GAAGAC 3 cut(s) 244, 841, 979
Bbv12I GWGCWC 3 cut(s) 420, 846, 968
BbvI GCAGC 4 cut(s) 220, 223, 242, 752
BccI CCATC 6 cut(s) 34, 127, 455, 821, 1165, 1174
BceAI ACGGC 9 cut(s) 125, 263, 402, 538, 599, 757, 941, 1068, 1210
BciT130I CCWGG 3 cut(s) 257, 347, 662
BcnI CCSGG 7 cut(s) 610, 611, 693, 916, 929, 935, 1165
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 3 cut(s) 81, 390, 1107
BfoI RGCGCY 2 cut(s) 307, 1164
BfuAI ACCTGC 1 cut(s) 303
BglI GCCNNNNNGGC 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 292, 931
BmeRI GACNNNNNGTC 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 609
BmgBI CACGTC 5 cut(s) 137, 448, 562, 688, 1128
BmiI GGNNCC 8 cut(s) 162, 305, 329, 479, 578, 716, 932, 1162
BmsI GCATC 3 cut(s) 388, 445, 1330
BoxI GACNNNNGTC 1 cut(s) 1061
BpiI GAAGAC 3 cut(s) 244, 841, 979
BpmI CTGGAG 1 cut(s) 329
BpuMI CCSGG 7 cut(s) 610, 611, 693, 916, 929, 935, 1165
BsaAI YACGTR 4 cut(s) 270, 354, 570, 679
BsaBI GATNNNNATC 1 cut(s) 629
BsaHI GRCGYC 3 cut(s) 304, 1062, 1161
BsaJI CCNNGG 3 cut(s) 609, 660, 957
BsaWI WCCGGW 1 cut(s) 399
BsaXI ACNNNNNCTCC 6 cut(s) 996, 1013, 1026, 1043, 1124, 1154
Bse118I RCCGGY 6 cut(s) 306, 474, 573, 761, 794, 1217
Bse1I ACTGG 2 cut(s) 380, 1107
Bse3DI GCAATG 2 cut(s) 73, 195
Bse8I GATNNNNATC 1 cut(s) 629
BseAI TCCGGA 1 cut(s) 399
BseBI CCWGG 3 cut(s) 257, 347, 662
BseDI CCNNGG 3 cut(s) 609, 660, 957
BseGI GGATG 3 cut(s) 466, 672, 813
BseJI GATNNNNATC 1 cut(s) 629
BseMI GCAATG 2 cut(s) 73, 195
BseNI ACTGG 2 cut(s) 380, 1107
BsePI GCGCGC 1 cut(s) 972
BseRI GAGGAG 5 cut(s) 332, 1020, 1037, 1148, 1271
BseSI GKGCMC 3 cut(s) 693, 718, 968
BseXI GCAGC 4 cut(s) 220, 223, 242, 752
BsgI GTGCAG 2 cut(s) 222, 1334
Bsh1285I CGRYCG 1 cut(s) 1059
BshNI GGYRCC 3 cut(s) 303, 477, 1160
BsiEI CGRYCG 1 cut(s) 1059
BsiHKAI GWGCWC 3 cut(s) 420, 846, 968
BsiHKCI CYCGRG 1 cut(s) 609
BsiWI CGTACG 3 cut(s) 88, 383, 1077
BslFI GGGAC 4 cut(s) 683, 839, 1113, 1373
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 4 cut(s) 683, 839, 1113, 1373
BsoBI CYCGRG 1 cut(s) 609
Bsp120I GGGCCC 1 cut(s) 714
Bsp1286I GDGCHC 5 cut(s) 420, 693, 718, 846, 968
Bsp13I TCCGGA 1 cut(s) 399
Bsp1407I TGTACA 1 cut(s) 1263
Bsp143I GATC 1 cut(s) 624
BspEI TCCGGA 1 cut(s) 399
BspLI GGNNCC 8 cut(s) 162, 305, 329, 479, 578, 716, 932, 1162
BspMI ACCTGC 1 cut(s) 303
BspPI GGATC 1 cut(s) 632
BspQI GCTCTTC 1 cut(s) 834
BspT107I GGYRCC 3 cut(s) 303, 477, 1160
BsrBI CCGCTC 2 cut(s) 288, 1249
BsrDI GCAATG 2 cut(s) 73, 195
BsrFI RCCGGY 6 cut(s) 306, 474, 573, 761, 794, 1217
BsrGI TGTACA 1 cut(s) 1263
BsrI ACTGG 2 cut(s) 380, 1107
BssAI RCCGGY 6 cut(s) 306, 474, 573, 761, 794, 1217
BssECI CCNNGG 3 cut(s) 609, 660, 957
BssHII GCGCGC 1 cut(s) 972
BssMI GATC 1 cut(s) 624
BssNI GRCGYC 3 cut(s) 304, 1062, 1161
BssSI CACGAG 1 cut(s) 967
Bst2BI CACGAG 1 cut(s) 967
Bst2UI CCWGG 3 cut(s) 257, 347, 662
Bst4CI ACNGT 3 cut(s) 88, 830, 1153
Bst6I CTCTTC 3 cut(s) 542, 834, 1030
BstACI GRCGYC 3 cut(s) 304, 1062, 1161
BstAPI GCANNNNNTGC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 1263
BstBAI YACGTR 4 cut(s) 270, 354, 570, 679
BstDEI CTNAG 1 cut(s) 721
BstDSI CCRYGG 1 cut(s) 957
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 3 cut(s) 466, 672, 813
BstH2I RGCGCY 2 cut(s) 307, 1164
BstKTI GATC 1 cut(s) 627
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 1 cut(s) 624
BstMCI CGRYCG 1 cut(s) 1059
BstNI CCWGG 3 cut(s) 257, 347, 662
BstNSI RCATGY 2 cut(s) 901, 1322
BstPAI GACNNNNGTC 1 cut(s) 1061
BstSLI GKGCMC 3 cut(s) 693, 718, 968
BstV1I GCAGC 4 cut(s) 220, 223, 242, 752
BstV2I GAAGAC 3 cut(s) 244, 841, 979
BtgI CCRYGG 1 cut(s) 957
BtgZI GCGATG 1 cut(s) 1193
BtrI CACGTC 5 cut(s) 137, 448, 562, 688, 1128
BtsCI GGATG 3 cut(s) 466, 672, 813
BtsI GCAGTG 2 cut(s) 1342, 1346
BtsIMutI CAGTG 3 cut(s) 151, 1342, 1346
BveI ACCTGC 1 cut(s) 303
CaiI CAGNNNCTG 1 cut(s) 236
Cfr10I RCCGGY 6 cut(s) 306, 474, 573, 761, 794, 1217
Cfr9I CCCGGG 1 cut(s) 609
CseI GACGC 2 cut(s) 794, 1079
CviAII CATG 4 cut(s) 898, 910, 1189, 1319
DdeI CTNAG 1 cut(s) 721
DinI GGCGCC 2 cut(s) 305, 1162
DpnI GATC 1 cut(s) 626
DpnII GATC 1 cut(s) 624
DrdI GACNNNNNNGTC 2 cut(s) 368, 527
DriI GACNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 2 cut(s) 368, 527
EaeI YGGCCR 2 cut(s) 155, 217
Eam1104I CTCTTC 3 cut(s) 542, 834, 1030
Eam1105I GACNNNNNGTC 1 cut(s) 140
EarI CTCTTC 3 cut(s) 542, 834, 1030
EciI GGCGGA 3 cut(s) 698, 1034, 1136
Ecl136II GAGCTC 1 cut(s) 844
Eco24I GRGCYC 2 cut(s) 718, 846
Eco47I GGWCC 2 cut(s) 292, 931
Eco53kI GAGCTC 1 cut(s) 844
Eco72I CACGTG 3 cut(s) 270, 354, 679
Eco88I CYCGRG 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 844
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 714
EcoRII CCWGG 3 cut(s) 255, 345, 660
EcoT38I GRGCYC 2 cut(s) 718, 846
EgeI GGCGCC 2 cut(s) 305, 1162
EheI GGCGCC 2 cut(s) 305, 1162
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 4 cut(s) 901, 913, 1192, 1322
FaiI YATR 5 cut(s) 414, 899, 911, 1190, 1320
FaqI GGGAC 4 cut(s) 683, 839, 1113, 1373
FatI CATG 4 cut(s) 897, 909, 1188, 1318
FauI CCCGC 9 cut(s) 267, 293, 705, 761, 851, 1110, 1190, 1214, 1242
FblI GTMKAC 1 cut(s) 372
FokI GGATG 3 cut(s) 473, 659, 800
FriOI GRGCYC 2 cut(s) 718, 846
FspBI CTAG 3 cut(s) 81, 390, 1107
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 2 cut(s) 307, 1164
HgaI GACGC 2 cut(s) 794, 1079
Hin1I GRCGYC 3 cut(s) 304, 1062, 1161
Hin1II CATG 4 cut(s) 901, 913, 1192, 1322
HincII GTYRAC 2 cut(s) 867, 1294
HindII GTYRAC 2 cut(s) 867, 1294
HinfI GANTC 5 cut(s) 334, 484, 534, 978, 1041
HphI GGTGA 6 cut(s) 15, 30, 116, 751, 1165, 1237
Hpy166II GTNNAC 8 cut(s) 373, 451, 754, 867, 966, 1149, 1266, 1294
Hpy188I TCNGA 6 cut(s) 292, 445, 493, 533, 1091, 1132
Hpy188III TCNNGA 5 cut(s) 129, 400, 940, 1048, 1373
Hpy8I GTNNAC 8 cut(s) 373, 451, 754, 867, 966, 1149, 1266, 1294
HpyAV CCTTC 3 cut(s) 51, 93, 107
HpyCH4III ACNGT 3 cut(s) 88, 830, 1153
HpyCH4V TGCA 4 cut(s) 239, 966, 1188, 1351
HpyF3I CTNAG 1 cut(s) 721
Hsp92I GRCGYC 3 cut(s) 304, 1062, 1161
Hsp92II CATG 4 cut(s) 901, 913, 1192, 1322
KasI GGCGCC 2 cut(s) 303, 1160
Kpn2I TCCGGA 1 cut(s) 399
KroI GCCGGC 3 cut(s) 306, 794, 1217
KroNI GCCGGC 3 cut(s) 308, 796, 1219
Kzo9I GATC 1 cut(s) 624
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 7 cut(s) 160, 269, 1024, 1135, 1246, 1258, 1276
Lsp1109I GCAGC 4 cut(s) 220, 223, 242, 752
LweI GCATC 3 cut(s) 388, 445, 1330
MaeI CTAG 3 cut(s) 81, 390, 1107
MaeIII GTNAC 4 cut(s) 616, 830, 937, 1048
MalI GATC 1 cut(s) 626
MbiI CCGCTC 2 cut(s) 288, 1249
MboI GATC 1 cut(s) 624
MboII GAAGA 9 cut(s) 3, 24, 117, 244, 529, 841, 851, 979, 1047
MhlI GDGCHC 5 cut(s) 420, 693, 718, 846, 968
MluCI AATT 2 cut(s) 53, 637
Mly113I GGCGCC 2 cut(s) 304, 1161
MlyI GAGTC 4 cut(s) 328, 478, 528, 987
MmeI TCCRAC 4 cut(s) 516, 556, 1069, 1110
MreI CGCCGGCG 2 cut(s) 794, 1217
MroI TCCGGA 1 cut(s) 399
MroNI GCCGGC 3 cut(s) 306, 794, 1217
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 1 cut(s) 233
MvaI CCWGG 3 cut(s) 257, 347, 662
NaeI GCCGGC 3 cut(s) 308, 796, 1219
NarI GGCGCC 2 cut(s) 304, 1161
NciI CCSGG 7 cut(s) 610, 611, 693, 916, 929, 935, 1165
NdeII GATC 1 cut(s) 624
NgoMIV GCCGGC 3 cut(s) 306, 794, 1217
NlaIII CATG 4 cut(s) 901, 913, 1192, 1322
NlaIV GGNNCC 8 cut(s) 162, 305, 329, 479, 578, 716, 932, 1162
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 2 cut(s) 937, 1048
NspI RCATGY 2 cut(s) 901, 1322
PauI GCGCGC 1 cut(s) 972
PciI ACATGT 1 cut(s) 1318
PciSI GCTCTTC 1 cut(s) 834
PcsI WCGNNNNNNNCGW 2 cut(s) 684, 1077
PdiI GCCGGC 3 cut(s) 308, 796, 1219
PfeI GAWTC 1 cut(s) 1041
Pfl23II CGTACG 3 cut(s) 88, 383, 1077
PfoI TCCNGGA 1 cut(s) 345
PleI GAGTC 4 cut(s) 328, 478, 528, 986
PluTI GGCGCC 2 cut(s) 307, 1164
PmaCI CACGTG 3 cut(s) 270, 354, 679
PmlI CACGTG 3 cut(s) 270, 354, 679
PpsI GAGTC 4 cut(s) 328, 478, 528, 986
Ppu21I YACGTR 4 cut(s) 270, 354, 570, 679
PscI ACATGT 1 cut(s) 1318
PshAI GACNNNNGTC 1 cut(s) 1061
Psp124BI GAGCTC 1 cut(s) 846
Psp6I CCWGG 3 cut(s) 255, 345, 660
PspCI CACGTG 3 cut(s) 270, 354, 679
PspGI CCWGG 3 cut(s) 255, 345, 660
PspLI CGTACG 3 cut(s) 88, 383, 1077
PspN4I GGNNCC 8 cut(s) 162, 305, 329, 479, 578, 716, 932, 1162
PspOMI GGGCCC 1 cut(s) 714
PsrI GAACNNNNNNTAC 2 cut(s) 1184, 1216
PstNI CAGNNNCTG 1 cut(s) 236
PteI GCGCGC 1 cut(s) 972
PvuII CAGCTG 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 1 cut(s) 846
SapI GCTCTTC 1 cut(s) 834
Sau3AI GATC 1 cut(s) 624
SchI GAGTC 4 cut(s) 328, 478, 528, 987
SduI GDGCHC 5 cut(s) 420, 693, 718, 846, 968
SfaNI GCATC 3 cut(s) 388, 445, 1330
SfoI GGCGCC 2 cut(s) 305, 1162
SgrAI CRCCGGYG 2 cut(s) 794, 1217
SinI GGWCC 2 cut(s) 292, 931
SmaI CCCGGG 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 677
Sse9I AATT 2 cut(s) 53, 637
SspDI GGCGCC 2 cut(s) 303, 1160
SspMI CTAG 3 cut(s) 81, 390, 1107
SstI GAGCTC 1 cut(s) 846
TaaI ACNGT 3 cut(s) 88, 830, 1153
TaqI TCGA 4 cut(s) 128, 171, 540, 990
TaqII GACCGA 3 cut(s) 884, 920, 1073
TasI AATT 2 cut(s) 53, 637
TatI WGTACW 2 cut(s) 1029, 1263
TauI GCSGC 8 cut(s) 74, 185, 203, 222, 230, 513, 1076, 1117
TfiI GAWTC 1 cut(s) 1041
TscAI CASTG 3 cut(s) 151, 1342, 1353
TseFI GTSAC 2 cut(s) 937, 1048
TseI GCWGC 4 cut(s) 230, 233, 236, 765
Tsp45I GTSAC 2 cut(s) 937, 1048
TspDTI ATGAA 3 cut(s) 24, 749, 1205
TspGWI ACGGA 1 cut(s) 1017
TspMI CCCGGG 1 cut(s) 609
TspRI CASTG 3 cut(s) 151, 1342, 1353
VneI GTGCAC 1 cut(s) 964
VpaK11BI GGWCC 2 cut(s) 292, 931
XagI CCTNNNNNAGG 1 cut(s) 344
XceI RCATGY 2 cut(s) 901, 1322
XmaI CCCGGG 1 cut(s) 609
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 3 cut(s) 81, 390, 1107
ZraI GACGTC 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.