Rh2AG518700

Transcriptional regulator STERILE

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
74522367 .. 74527462
5096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG518700.1

Sequence Viewer

Length: 1383 bp
ATGTCTTCTTCTTCATCATCATCACCATCATCTTCATCACCTTCCACATCTCAATTTGATAGTGGCAATGCGGCTGGTACTAGCACCGTACGACAAAGAAGGGGTGATTTTGAAGGGCCATCATCTTCGAGACGACGTGCCGTCAGTGAGGTCTGGCCGGAGCCTTTCCTCGAAGCCCTCGCGGCCCAAGTCGCCATTGCCGCTTCTCGCAACATTGGCCGCCTCGCCGCAGCTGCTGCACTCGCCAATGTCTTCCAGGTCTGCTCCACGTGGCGCGCCGTTTCCCGCTCGGACCTGCTCTGGCGCCGGCTCACTCGCCGGATTTGGGGCCGGACTCGCCTCCTCCAGGACACGTGGCGCGACGAGTACGTCTACTGGCATCGTACGGCTAGAAACTTCCGGACAAGGAGGTATGCGCACACGATACTCTACTTTGACCCGTCTGACGTGGACGATCCGGATGGACTGACTTGCCGGTGCCTGACTCTCTCCGACAACTACCTCGCCTGCGGCTTCGCGGACGGCGCCGTCCGACTCTTCGACCTCGCCACGCGCCTCCACGTCAGCACGTACCGGCCCCACCAGCGCGACAGGTTGGGCCGATTTTCCCGGGCCGTTACGGGGATCGTCATCAGCAATTCTCGGCTCACTTTCGCCACCCTGGACGGGGACATCCACGTGGCGGACGTGCCCCCCGGCCCGCCAATCACGCGGAGGGCCCACTTAGGCCAAGTGATGAACGACGGCGTGTTGGTGGACTTCACCGGCTGCGGGAGGTGGTGGGTGGGTCTGTACGCCGGCGTTCCGGGTCGGGCCATCCACATCTGGGACAGTAACACCGAAGAGCTCGTCTTCGTGGGCGGGGAGTTGACCGAGCCGGAAGCGGTGGTGGGCTGGCACATGCTGACCGAGATGACCGGGTTCGTGGGCCGGGTCCGGGTCACGACCCAAGAAACCGCCGTGGCGTGCACGAGCGCGCGAGTCATCGTCTTCGATTTGCGGAACCAAGGAGAGGTGCTGGCGGAGGAGCAGTACAGAAGAGGAATCGTCGTGACGGCGACCGACGTCAGCGACGCGGCGTACGTTGTCGTCGGAAACAGGGGACTGGCTAGGGTGCGGCGGGCGGACACGTCGGAGGAGCTGTGCAGGTTCACGGTGAGAGGCGCCGGGCAGATGGGGGCGATGGGTTGCATGAACGGCGGGTACGCGCTGATGTGCGCCGGCGGGGTGATTAGGGTTTGGGAGGTGGAGCGGGGCGAGGAGCTGTACACTTTCTGGGAGCACGTGGGGGCGGTCAACGCTTTTGTCTGCGACGAACGACATGTCGCGGCGTGGGGTAGTGATGCGACACTGCACCTGTGGGACTTTGGTGGTCAGGAGTAG

Protein Analysis

460

Amino Acids

50.85

Weight (kDa)

6.84

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 407 - 460 2.3e-06 TEP-1 second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014528)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 368, 527
AatII GACGTC 1 cut(s) 1068
Acc16I TGCGCA 1 cut(s) 417
Acc36I ACCTGC 2 cut(s) 303, 1137
AccB1I GGYRCC 4 cut(s) 303, 477, 524, 1163
AccBSI CCGCTC 2 cut(s) 288, 1252
AccI GTMKAC 1 cut(s) 372
AccIII TCCGGA 2 cut(s) 399, 457
AclWI GGATC 2 cut(s) 449, 632
AcoI YGGCCR 2 cut(s) 155, 217
AcvI CACGTG 4 cut(s) 270, 354, 679, 1285
AcyI GRCGYC 4 cut(s) 304, 525, 1065, 1164
AflIII ACRYGT 3 cut(s) 351, 1128, 1321
AgsI TTSAA 1 cut(s) 113
AhdI GACNNNNNGTC 1 cut(s) 140
AjiI CACGTC 5 cut(s) 137, 448, 562, 688, 1131
AjnI CCWGG 3 cut(s) 255, 345, 660
AluBI AGCT 4 cut(s) 233, 847, 1141, 1264
AluI AGCT 4 cut(s) 233, 847, 1141, 1264
Alw21I GWGCWC 3 cut(s) 849, 971, 1284
Alw26I GTCTC 1 cut(s) 124
Alw44I GTGCAC 1 cut(s) 967
AlwI GGATC 2 cut(s) 449, 632
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 609
Aor13HI TCCGGA 2 cut(s) 399, 457
ApaI GGGCCC 1 cut(s) 721
ApaLI GTGCAC 1 cut(s) 967
ApeKI GCWGC 4 cut(s) 230, 233, 236, 768
ArsI GACNNNNNNTTYG 4 cut(s) 834, 866, 1308, 1340
AscI GGCGCGCC 1 cut(s) 274
AsuC2I CCSGG 8 cut(s) 610, 611, 696, 807, 919, 932, 938, 1168
AsuHPI GGTGA 6 cut(s) 15, 30, 116, 754, 1168, 1240
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 2 cut(s) 292, 934
BaeGI GKGCMC 3 cut(s) 693, 721, 971
BanI GGYRCC 4 cut(s) 303, 477, 524, 1163
BanII GRGCYC 2 cut(s) 721, 849
BauI CACGAG 1 cut(s) 970
BbrPI CACGTG 4 cut(s) 270, 354, 679, 1285
BbsI GAAGAC 3 cut(s) 244, 844, 982
Bbv12I GWGCWC 3 cut(s) 849, 971, 1284
BbvI GCAGC 4 cut(s) 220, 223, 242, 755
BccI CCATC 6 cut(s) 34, 127, 455, 824, 1168, 1177
BciT130I CCWGG 3 cut(s) 257, 347, 662
BcnI CCSGG 8 cut(s) 610, 611, 696, 807, 919, 932, 938, 1168
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 3 cut(s) 81, 390, 1110
BfoI RGCGCY 3 cut(s) 307, 528, 1167
BfuAI ACCTGC 2 cut(s) 303, 1137
BglI GCCNNNNNGGC 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 292, 934
BmeRI GACNNNNNGTC 1 cut(s) 140
BmeT110I CYCGRG 1 cut(s) 609
BmgBI CACGTC 5 cut(s) 137, 448, 562, 688, 1131
BmsI GCATC 2 cut(s) 388, 1333
BoxI GACNNNNGTC 1 cut(s) 1064
BpiI GAAGAC 3 cut(s) 244, 844, 982
BpmI CTGGAG 1 cut(s) 329
BpuMI CCSGG 8 cut(s) 610, 611, 696, 807, 919, 932, 938, 1168
BsaAI YACGTR 5 cut(s) 270, 354, 570, 679, 1285
BsaBI GATNNNNATC 1 cut(s) 629
BsaHI GRCGYC 4 cut(s) 304, 525, 1065, 1164
BsaJI CCNNGG 5 cut(s) 609, 660, 694, 960, 1006
BsaWI WCCGGW 2 cut(s) 399, 457
BsaXI ACNNNNNCTCC 4 cut(s) 1016, 1046, 1127, 1157
Bse118I RCCGGY 6 cut(s) 306, 474, 573, 764, 797, 1220
Bse1I ACTGG 2 cut(s) 380, 1110
Bse3DI GCAATG 2 cut(s) 73, 195
Bse8I GATNNNNATC 1 cut(s) 629
BseAI TCCGGA 2 cut(s) 399, 457
BseBI CCWGG 3 cut(s) 257, 347, 662
BseDI CCNNGG 5 cut(s) 609, 660, 694, 960, 1006
BseGI GGATG 3 cut(s) 466, 672, 816
BseJI GATNNNNATC 1 cut(s) 629
BseMI GCAATG 2 cut(s) 73, 195
BseNI ACTGG 2 cut(s) 380, 1110
BsePI GCGCGC 2 cut(s) 274, 975
BseRI GAGGAG 4 cut(s) 332, 1040, 1151, 1274
BseSI GKGCMC 3 cut(s) 693, 721, 971
BseXI GCAGC 4 cut(s) 220, 223, 242, 755
BsgI GTGCAG 3 cut(s) 222, 1165, 1337
Bsh1285I CGRYCG 1 cut(s) 1062
BshNI GGYRCC 4 cut(s) 303, 477, 524, 1163
BsiEI CGRYCG 1 cut(s) 1062
BsiHKAI GWGCWC 3 cut(s) 849, 971, 1284
BsiHKCI CYCGRG 1 cut(s) 609
BsiWI CGTACG 3 cut(s) 88, 383, 1080
BslFI GGGAC 4 cut(s) 683, 842, 1116, 1376
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 4 cut(s) 683, 842, 1116, 1376
BsoBI CYCGRG 1 cut(s) 609
Bsp120I GGGCCC 1 cut(s) 717
Bsp1286I GDGCHC 5 cut(s) 693, 721, 849, 971, 1284
Bsp13I TCCGGA 2 cut(s) 399, 457
Bsp1407I TGTACA 1 cut(s) 1266
Bsp143I GATC 2 cut(s) 454, 624
BspEI TCCGGA 2 cut(s) 399, 457
BspMI ACCTGC 2 cut(s) 303, 1137
BspPI GGATC 2 cut(s) 449, 632
BspQI GCTCTTC 1 cut(s) 837
BspT107I GGYRCC 4 cut(s) 303, 477, 524, 1163
BsrBI CCGCTC 2 cut(s) 288, 1252
BsrDI GCAATG 2 cut(s) 73, 195
BsrFI RCCGGY 6 cut(s) 306, 474, 573, 764, 797, 1220
BsrGI TGTACA 1 cut(s) 1266
BsrI ACTGG 2 cut(s) 380, 1110
BssAI RCCGGY 6 cut(s) 306, 474, 573, 764, 797, 1220
BssECI CCNNGG 5 cut(s) 609, 660, 694, 960, 1006
BssHII GCGCGC 2 cut(s) 274, 975
BssMI GATC 2 cut(s) 454, 624
BssNI GRCGYC 4 cut(s) 304, 525, 1065, 1164
BssSI CACGAG 1 cut(s) 970
BssT1I CCWWGG 1 cut(s) 1006
Bst2BI CACGAG 1 cut(s) 970
Bst2UI CCWGG 3 cut(s) 257, 347, 662
Bst4CI ACNGT 3 cut(s) 88, 833, 1156
Bst6I CTCTTC 3 cut(s) 542, 837, 1033
BstACI GRCGYC 4 cut(s) 304, 525, 1065, 1164
BstAPI GCANNNNNTGC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 1266
BstBAI YACGTR 5 cut(s) 270, 354, 570, 679, 1285
BstDEI CTNAG 1 cut(s) 724
BstDSI CCRYGG 1 cut(s) 960
BstENI CCTNNNNNAGG 1 cut(s) 344
BstF5I GGATG 3 cut(s) 466, 672, 816
BstH2I RGCGCY 3 cut(s) 307, 528, 1167
BstKTI GATC 2 cut(s) 457, 627
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 2 cut(s) 454, 624
BstMCI CGRYCG 1 cut(s) 1062
BstNI CCWGG 3 cut(s) 257, 347, 662
BstNSI RCATGY 2 cut(s) 904, 1325
BstPAI GACNNNNGTC 1 cut(s) 1064
BstSLI GKGCMC 3 cut(s) 693, 721, 971
BstV1I GCAGC 4 cut(s) 220, 223, 242, 755
BstV2I GAAGAC 3 cut(s) 244, 844, 982
BtgI CCRYGG 1 cut(s) 960
BtgZI GCGATG 1 cut(s) 1196
BtrI CACGTC 5 cut(s) 137, 448, 562, 688, 1131
BtsCI GGATG 3 cut(s) 466, 672, 816
BtsI GCAGTG 1 cut(s) 1349
BtsIMutI CAGTG 2 cut(s) 151, 1349
BveI ACCTGC 2 cut(s) 303, 1137
CaiI CAGNNNCTG 1 cut(s) 236
Cfr10I RCCGGY 6 cut(s) 306, 474, 573, 764, 797, 1220
Cfr9I CCCGGG 1 cut(s) 609
CseI GACGC 1 cut(s) 1082
CviAII CATG 3 cut(s) 901, 1192, 1322
DdeI CTNAG 1 cut(s) 724
DinI GGCGCC 3 cut(s) 305, 526, 1165
DpnI GATC 2 cut(s) 456, 626
DpnII GATC 2 cut(s) 454, 624
DrdI GACNNNNNNGTC 2 cut(s) 368, 527
DriI GACNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 2 cut(s) 368, 527
EaeI YGGCCR 2 cut(s) 155, 217
Eam1104I CTCTTC 3 cut(s) 542, 837, 1033
Eam1105I GACNNNNNGTC 1 cut(s) 140
EarI CTCTTC 3 cut(s) 542, 837, 1033
EciI GGCGGA 3 cut(s) 698, 1037, 1139
Ecl136II GAGCTC 1 cut(s) 847
Eco130I CCWWGG 1 cut(s) 1006
Eco24I GRGCYC 2 cut(s) 721, 849
Eco47I GGWCC 2 cut(s) 292, 934
Eco53kI GAGCTC 1 cut(s) 847
Eco72I CACGTG 4 cut(s) 270, 354, 679, 1285
Eco88I CYCGRG 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 847
EcoNI CCTNNNNNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 717
EcoRII CCWGG 3 cut(s) 255, 345, 660
EcoT14I CCWWGG 1 cut(s) 1006
EcoT38I GRGCYC 2 cut(s) 721, 849
EgeI GGCGCC 3 cut(s) 305, 526, 1165
EheI GGCGCC 3 cut(s) 305, 526, 1165
ErhI CCWWGG 1 cut(s) 1006
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 3 cut(s) 904, 1195, 1325
FaiI YATR 4 cut(s) 414, 902, 1193, 1323
FaqI GGGAC 4 cut(s) 683, 842, 1116, 1376
FatI CATG 3 cut(s) 900, 1191, 1321
FauI CCCGC 8 cut(s) 293, 708, 764, 854, 1113, 1193, 1217, 1245
FblI GTMKAC 1 cut(s) 372
FokI GGATG 3 cut(s) 473, 659, 803
FriOI GRGCYC 2 cut(s) 721, 849
FspAI RTGCGCAY 1 cut(s) 417
FspBI CTAG 3 cut(s) 81, 390, 1110
FspI TGCGCA 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 329
HaeII RGCGCY 3 cut(s) 307, 528, 1167
HgaI GACGC 1 cut(s) 1082
Hin1I GRCGYC 4 cut(s) 304, 525, 1065, 1164
Hin1II CATG 3 cut(s) 904, 1195, 1325
HincII GTYRAC 2 cut(s) 870, 1297
HindII GTYRAC 2 cut(s) 870, 1297
HinfI GANTC 5 cut(s) 334, 484, 534, 981, 1044
HphI GGTGA 6 cut(s) 15, 30, 116, 754, 1168, 1240
Hpy166II GTNNAC 8 cut(s) 373, 451, 757, 870, 969, 1152, 1269, 1297
Hpy188I TCNGA 6 cut(s) 292, 445, 493, 533, 1094, 1135
Hpy188III TCNNGA 6 cut(s) 129, 400, 458, 943, 1051, 1376
Hpy8I GTNNAC 8 cut(s) 373, 451, 757, 870, 969, 1152, 1269, 1297
Hpy99I CGWCG 9 cut(s) 138, 365, 746, 1052, 1067, 1076, 1094, 1135, 1316
HpyAV CCTTC 3 cut(s) 51, 93, 107
HpyCH4III ACNGT 3 cut(s) 88, 833, 1156
HpyCH4V TGCA 5 cut(s) 239, 969, 1146, 1191, 1354
HpyF3I CTNAG 1 cut(s) 724
Hsp92I GRCGYC 4 cut(s) 304, 525, 1065, 1164
Hsp92II CATG 3 cut(s) 904, 1195, 1325
KasI GGCGCC 3 cut(s) 303, 524, 1163
Kpn2I TCCGGA 2 cut(s) 399, 457
KroI GCCGGC 3 cut(s) 306, 797, 1220
KroNI GCCGGC 3 cut(s) 308, 799, 1222
Kzo9I GATC 2 cut(s) 454, 624
LguI GCTCTTC 1 cut(s) 837
LmnI GCTCC 7 cut(s) 160, 269, 1027, 1138, 1249, 1261, 1279
Lsp1109I GCAGC 4 cut(s) 220, 223, 242, 755
LweI GCATC 2 cut(s) 388, 1333
MaeI CTAG 3 cut(s) 81, 390, 1110
MaeIII GTNAC 4 cut(s) 616, 833, 940, 1051
MalI GATC 2 cut(s) 456, 626
MbiI CCGCTC 2 cut(s) 288, 1252
MboI GATC 2 cut(s) 454, 624
MboII GAAGA 9 cut(s) 3, 24, 117, 244, 529, 844, 854, 982, 1050
MhlI GDGCHC 5 cut(s) 693, 721, 849, 971, 1284
MluCI AATT 2 cut(s) 53, 637
Mly113I GGCGCC 3 cut(s) 304, 525, 1164
MlyI GAGTC 4 cut(s) 328, 478, 528, 990
MmeI TCCRAC 4 cut(s) 516, 556, 1072, 1113
MreI CGCCGGCG 2 cut(s) 797, 1220
MroI TCCGGA 2 cut(s) 399, 457
MroNI GCCGGC 3 cut(s) 306, 797, 1220
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 1 cut(s) 233
MvaI CCWGG 3 cut(s) 257, 347, 662
NaeI GCCGGC 3 cut(s) 308, 799, 1222
NarI GGCGCC 3 cut(s) 304, 525, 1164
NciI CCSGG 8 cut(s) 610, 611, 696, 807, 919, 932, 938, 1168
NdeII GATC 2 cut(s) 454, 624
NgoMIV GCCGGC 3 cut(s) 306, 797, 1220
NlaIII CATG 3 cut(s) 904, 1195, 1325
NmeAIII GCCGAG 1 cut(s) 622
NmuCI GTSAC 2 cut(s) 940, 1051
NsbI TGCGCA 1 cut(s) 417
NspI RCATGY 2 cut(s) 904, 1325
PalAI GGCGCGCC 1 cut(s) 274
PauI GCGCGC 2 cut(s) 274, 975
PciI ACATGT 1 cut(s) 1321
PciSI GCTCTTC 1 cut(s) 837
PcsI WCGNNNNNNNCGW 2 cut(s) 684, 1080
PdiI GCCGGC 3 cut(s) 308, 799, 1222
PfeI GAWTC 1 cut(s) 1044
Pfl23II CGTACG 3 cut(s) 88, 383, 1080
PfoI TCCNGGA 1 cut(s) 345
PleI GAGTC 4 cut(s) 328, 478, 528, 989
PluTI GGCGCC 3 cut(s) 307, 528, 1167
PmaCI CACGTG 4 cut(s) 270, 354, 679, 1285
PmlI CACGTG 4 cut(s) 270, 354, 679, 1285
PpsI GAGTC 4 cut(s) 328, 478, 528, 989
Ppu21I YACGTR 5 cut(s) 270, 354, 570, 679, 1285
PscI ACATGT 1 cut(s) 1321
PshAI GACNNNNGTC 1 cut(s) 1064
Psp124BI GAGCTC 1 cut(s) 849
Psp6I CCWGG 3 cut(s) 255, 345, 660
PspCI CACGTG 4 cut(s) 270, 354, 679, 1285
PspGI CCWGG 3 cut(s) 255, 345, 660
PspLI CGTACG 3 cut(s) 88, 383, 1080
PspOMI GGGCCC 1 cut(s) 717
PsrI GAACNNNNNNTAC 2 cut(s) 1187, 1219
PstNI CAGNNNCTG 1 cut(s) 236
PteI GCGCGC 2 cut(s) 274, 975
PvuII CAGCTG 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 1 cut(s) 849
SapI GCTCTTC 1 cut(s) 837
Sau3AI GATC 2 cut(s) 454, 624
SchI GAGTC 4 cut(s) 328, 478, 528, 990
SduI GDGCHC 5 cut(s) 693, 721, 849, 971, 1284
SfaNI GCATC 2 cut(s) 388, 1333
SfoI GGCGCC 3 cut(s) 305, 526, 1165
SgrAI CRCCGGYG 2 cut(s) 797, 1220
SgsI GGCGCGCC 1 cut(s) 274
SinI GGWCC 2 cut(s) 292, 934
SmaI CCCGGG 1 cut(s) 611
SmiMI CAYNNNNRTG 1 cut(s) 677
Sse9I AATT 2 cut(s) 53, 637
SspDI GGCGCC 3 cut(s) 303, 524, 1163
SspMI CTAG 3 cut(s) 81, 390, 1110
SstI GAGCTC 1 cut(s) 849
StyI CCWWGG 1 cut(s) 1006
TaaI ACNGT 3 cut(s) 88, 833, 1156
TaqI TCGA 4 cut(s) 128, 171, 540, 993
TaqII GACCGA 3 cut(s) 887, 923, 1076
TasI AATT 2 cut(s) 53, 637
TatI WGTACW 2 cut(s) 1032, 1266
TauI GCSGC 9 cut(s) 74, 185, 203, 222, 230, 513, 1079, 1120, 1331
TfiI GAWTC 1 cut(s) 1044
TscAI CASTG 2 cut(s) 151, 1356
TseFI GTSAC 2 cut(s) 940, 1051
TseI GCWGC 4 cut(s) 230, 233, 236, 768
Tsp45I GTSAC 2 cut(s) 940, 1051
TspDTI ATGAA 3 cut(s) 24, 752, 1208
TspMI CCCGGG 1 cut(s) 609
TspRI CASTG 2 cut(s) 151, 1356
VneI GTGCAC 1 cut(s) 967
VpaK11BI GGWCC 2 cut(s) 292, 934
XagI CCTNNNNNAGG 1 cut(s) 344
XceI RCATGY 2 cut(s) 904, 1325
XmaI CCCGGG 1 cut(s) 609
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 3 cut(s) 81, 390, 1110
ZraI GACGTC 1 cut(s) 1066
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.