Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0019553

Physical Location & Seq

Genomic Coordinates Forward (+)

17307650 .. 17310565

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023050

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCAGACATAGTGAAGCAAATCCTAGCAAAGCTGATCCAGCTGGAGGACCAAGTGACCAAGGCTACAAACGAGGCCAACTCGTTTAAGCAGGACTGTGCGGAGCTGAAATCGAAGTCGGAGAAGTTGGCGGGTCTACTATGGCAGATCAATTGTGTTGATTTTGTTCATTCCAAATCCTTTCTACATCATGATATCAATCCAGATAATTTTCTCATGGGATTAGGAAGGCATGCAAATAAGGTATACATGATTGATTTTGGTCTGGCTAAGAAATATCGGGCTAGTACAACCCGTCAACATATTCCTTATAGAGAAAACAAGAATTTGATTGGAACACCAAGATATGCAAGCATGAACACCTACCTTGGGATTGAGCAAAGCTGGAGGGATGATTTGGAATCTCTTGGTTACGTCCTGATGTACTTCCTAAGGGAAGTGGCGGGACATGTATGTTATGGTGAGCAACTTGATGGGAATTCTGGAAGTTTACTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

167

Amino Acids

18.89

Weight (kDa)

7.01

Isoelectric Point (pI)

25.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	6 - 53	9.1e-12	Domain of unknown function (DUF7792)
Pkinase_fungal	PF17667	34 - 143	1.5e-08	Fungal protein kinase
Pkinase	PF00069	44 - 143	2.3e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019553)

Species	Orthologous Gene IDs
malus_domestica	MD08G1125500.v1.1 MD15G1105400.v1.1
pyrus_communis	pycom08g10460 pycom15g09560
rosa_laevigata	RLG00000023050 RLG00000036380
rosa_roxburghii	Rroxscaffold_7G00212790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	136, 246
AciI	CCGC	3 cut(s)	101, 131, 443
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	2 cut(s)	325, 478
AfaI	GTAC	2 cut(s)	289, 425
AfiI	CCNNNNNNNGG	2 cut(s)	46, 369
AflIII	ACRYGT	1 cut(s)	448
AluBI	AGCT	4 cut(s)	34, 43, 106, 384
AluI	AGCT	4 cut(s)	34, 43, 106, 384
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	1 cut(s)	75
ApoI	RAATTY	2 cut(s)	325, 478
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	473
AvaII	GGWCC	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	431
BccI	CCATC	1 cut(s)	467
BfaI	CTAG	2 cut(s)	26, 285
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpmI	CTGGAG	2 cut(s)	65, 406
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	60, 367
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 369
Bse21I	CCTNAGG	1 cut(s)	431
Bse8I	GATNNNNATC	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	60, 367
BseGI	GGATG	1 cut(s)	397
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	2 cut(s)	46, 369
BshFI	GGCC	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	2 cut(s)	46, 369
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	36, 147
BspACI	CCGC	3 cut(s)	101, 131, 443
BspANI	GGCC	1 cut(s)	77
BspHI	TCATGA	1 cut(s)	190
BspPI	GGATC	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	60, 367
BssMI	GATC	2 cut(s)	36, 147
BssNAI	GTATAC	1 cut(s)	247
BssT1I	CCWWGG	2 cut(s)	60, 367
Bst1107I	GTATAC	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	234, 352
BstDEI	CTNAG	3 cut(s)	270, 431, 498
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	2 cut(s)	39, 150
BstMBI	GATC	2 cut(s)	36, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNSI	RCATGY	2 cut(s)	236, 452
BstZ17I	GTATAC	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	431
BsuRI	GGCC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	234, 352
CciI	TCATGA	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	2 cut(s)	288, 424
CviAII	CATG	6 cut(s)	191, 217, 233, 250, 355, 449
CviJI	RGCY	8 cut(s)	34, 43, 65, 77, 106, 269, 284, 384
CviKI_1	RGCY	8 cut(s)	34, 43, 65, 77, 106, 269, 284, 384
CviQI	GTAC	2 cut(s)	288, 424
DdeI	CTNAG	3 cut(s)	270, 431, 498
DpnI	GATC	2 cut(s)	38, 149
DpnII	GATC	2 cut(s)	36, 147
Eco130I	CCWWGG	2 cut(s)	60, 367
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	60, 367
ErhI	CCWWGG	2 cut(s)	60, 367
FaeI	CATG	6 cut(s)	194, 220, 236, 253, 358, 452
FaqI	GGGAC	1 cut(s)	459
FatI	CATG	6 cut(s)	190, 216, 232, 249, 354, 448
FauI	CCCGC	2 cut(s)	124, 436
FblI	GTMKAC	2 cut(s)	136, 246
FokI	GGATG	1 cut(s)	404
FspBI	CTAG	2 cut(s)	26, 285
GsuI	CTGGAG	2 cut(s)	65, 406
HaeIII	GGCC	1 cut(s)	77
Hin1II	CATG	6 cut(s)	194, 220, 236, 253, 358, 452
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	401
HphI	GGTGA	1 cut(s)	473
Hpy166II	GTNNAC	4 cut(s)	137, 247, 299, 491
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	4 cut(s)	191, 203, 418, 483
Hpy8I	GTNNAC	4 cut(s)	137, 247, 299, 491
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	2 cut(s)	236, 350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	3 cut(s)	270, 431, 498
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	6 cut(s)	194, 220, 236, 253, 358, 452
Kzo9I	GATC	2 cut(s)	36, 147
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	8 cut(s)	29, 53, 77, 216, 251, 370, 431, 468
MaeI	CTAG	2 cut(s)	26, 285
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	55, 410
MalI	GATC	2 cut(s)	38, 149
MboI	GATC	2 cut(s)	36, 147
MfeI	CAATTG	1 cut(s)	151
MluCI	AATT	4 cut(s)	151, 208, 325, 478
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	3 cut(s)	40, 67, 381
MseI	TTAA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	40
NdeII	GATC	2 cut(s)	36, 147
NlaIII	CATG	6 cut(s)	194, 220, 236, 253, 358, 452
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	2 cut(s)	236, 452
PaeI	GCATGC	1 cut(s)	236
PagI	TCATGA	1 cut(s)	190
PciI	ACATGT	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	401
PscI	ACATGT	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	43
RsaI	GTAC	2 cut(s)	289, 425
RsaNI	GTAC	2 cut(s)	288, 424
SaqAI	TTAA	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	36, 147
Sau96I	GGNCC	1 cut(s)	49
SetI	ASST	8 cut(s)	36, 45, 108, 246, 365, 369, 386, 417
SinI	GGWCC	1 cut(s)	49
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	4 cut(s)	151, 208, 325, 478
SsiI	CCGC	3 cut(s)	101, 131, 443
SspMI	CTAG	2 cut(s)	26, 285
StyI	CCWWGG	2 cut(s)	60, 367
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	417
TaqI	TCGA	1 cut(s)	113
TasI	AATT	4 cut(s)	151, 208, 325, 478
TatI	WGTACW	2 cut(s)	287, 423
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	158, 371
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	325, 478
XceI	RCATGY	2 cut(s)	236, 452
XmiI	GTMKAC	2 cut(s)	136, 246
XspI	CTAG	2 cut(s)	26, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.