Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019553

Physical Location & Seq

Genomic Coordinates Forward (+)

63298470 .. 63300735

Gene Structure 2266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCCAAGGATGAAGAGGACGACGATGAAATGATGAATACAGCCCTCATTGGGGCGGCGGTAGCGAGAGTCGTACCAATATTCAAATTAACGAAGAGGTTGCGATTAAGCTGCTGGGATACCAAATGTGCGGAACTTTCTTTGGAGACAGTTATGCTGGCAGATCAAATGATCAATCGTGTTGACTTTGTTCATTCCAAATCCTTTCTACATTGTGATATCAAGCCAGACAATTTTCTCATGGGATTAGGAAAGCCTGCAAATCAGGTATACATGATTGATTTTGGTCTGGCTAGGCAATATCGGGCTAGTACAACCCGTCAACATATTCCTTATAGAAATATTGGGAAAGAGAACATGATTGCAGAGCAAAGCCAGAGGGATGATTTGGAATCTCTTGGTTACGTCCTGATGGACTTCCTAAGGGAAGGGGCGGGGCATGTATGTTATGGTGAGCTACTTGATGGGAATTTTGGAAGTTTACTTACTTATTTGGCAATTTCTTCAACTTCTAATGAAGGTGTTGCAGTGTTGACATGGGTTGCTTTGGCTGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

186

Amino Acids

20.83

Weight (kDa)

4.95

Isoelectric Point (pI)

22.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	51 - 108	4.2e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019553)

Species	Orthologous Gene IDs
malus_domestica	MD08G1125500.v1.1 MD15G1105400.v1.1
pyrus_communis	pycom08g10460 pycom15g09560
rosa_laevigata	RLG00000023050 RLG00000036380
rosa_roxburghii	Rroxscaffold_7G00212790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	270
AciI	CCGC	4 cut(s)	56, 59, 131, 434
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	469
AfaI	GTAC	2 cut(s)	75, 313
AfiI	CCNNNNNNNGG	2 cut(s)	51, 52
AgsI	TTSAA	2 cut(s)	85, 507
AluBI	AGCT	2 cut(s)	111, 457
AluI	AGCT	2 cut(s)	111, 457
Alw26I	GTCTC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	422
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	469, 501
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	2 cut(s)	406, 458
BcgI	CGANNNNNNTGC	4 cut(s)	82, 93, 116, 127
BciVI	GTATCC	1 cut(s)	112
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	294, 309
BfuI	GTATCC	1 cut(s)	112
BisI	GCNGC	2 cut(s)	57, 112
BlsI	GCNGC	2 cut(s)	58, 113
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 52
Bse21I	CCTNAGG	1 cut(s)	422
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	16, 388
BseLI	CCNNNNNNNGG	2 cut(s)	51, 52
BseXI	GCAGC	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	114
BshFI	GGCC	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	51, 52
BsmAI	GTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	163, 171
BspACI	CCGC	4 cut(s)	56, 59, 131, 434
BspANI	GGCC	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	163, 171
BssNAI	GTATAC	1 cut(s)	271
BssT1I	CCWWGG	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	2 cut(s)	9, 89
BstC8I	GCNNGC	2 cut(s)	159, 258
BstDEI	CTNAG	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	16, 388
BstKTI	GATC	2 cut(s)	166, 174
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	163, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	443
BstV1I	GCAGC	1 cut(s)	98
BstZ17I	GTATAC	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	422
BsuI	GTATCC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	16, 388
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	2 cut(s)	159, 258
Csp6I	GTAC	2 cut(s)	74, 312
CviAII	CATG	5 cut(s)	241, 274, 358, 440, 537
CviQI	GTAC	2 cut(s)	74, 312
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	2 cut(s)	165, 173
DpnII	GATC	2 cut(s)	163, 171
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	9, 89
EarI	CTCTTC	2 cut(s)	9, 89
Eco130I	CCWWGG	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	422
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	5 cut(s)	244, 277, 361, 443, 540
FatI	CATG	5 cut(s)	240, 273, 357, 439, 536
FauI	CCCGC	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	171
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	57, 112
FokI	GGATG	2 cut(s)	23, 395
Fsp4HI	GCNGC	2 cut(s)	57, 112
FspBI	CTAG	2 cut(s)	294, 309
GluI	GCNGC	2 cut(s)	57, 112
GsaI	CCCAGC	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	244, 277, 361, 443, 540
HincII	GTYRAC	3 cut(s)	184, 323, 534
HindII	GTYRAC	3 cut(s)	184, 323, 534
HinfI	GANTC	2 cut(s)	69, 392
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	5 cut(s)	184, 271, 323, 482, 534
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	5 cut(s)	184, 271, 323, 482, 534
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	422, 512
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	260, 365, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	5 cut(s)	244, 277, 361, 443, 540
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	163, 171
LpnPI	CCDG	8 cut(s)	100, 143, 240, 251, 270, 275, 389, 422
Lsp1109I	GCAGC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	294, 309
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	165, 173
MboI	GATC	2 cut(s)	163, 171
MboII	GAAGA	3 cut(s)	26, 106, 495
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	86, 232, 469, 498
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	4 cut(s)	10, 56, 90, 372
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	89, 107, 559
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	163, 171
NlaIII	CATG	5 cut(s)	244, 277, 361, 443, 540
NspI	RCATGY	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	392
PkrI	GCNGC	2 cut(s)	58, 113
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	114
RsaI	GTAC	2 cut(s)	75, 313
RsaNI	GTAC	2 cut(s)	74, 312
SaqAI	TTAA	3 cut(s)	89, 107, 559
SatI	GCNGC	2 cut(s)	57, 112
Sau3AI	GATC	2 cut(s)	163, 171
SchI	GAGTC	1 cut(s)	78
SetI	ASST	6 cut(s)	101, 113, 270, 408, 459, 523
Sse9I	AATT	4 cut(s)	86, 232, 469, 498
SsiI	CCGC	4 cut(s)	56, 59, 131, 434
SspI	AATATT	2 cut(s)	81, 343
SspMI	CTAG	2 cut(s)	294, 309
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	408
TasI	AATT	4 cut(s)	86, 232, 469, 498
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	1 cut(s)	59
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	3 cut(s)	89, 107, 559
Tru9I	TTAA	3 cut(s)	89, 107, 559
TscAI	CASTG	1 cut(s)	534
TseI	GCWGC	1 cut(s)	111
TspDTI	ATGAA	5 cut(s)	27, 42, 50, 182, 531
TspRI	CASTG	1 cut(s)	534
XapI	RAATTY	1 cut(s)	469
XceI	RCATGY	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	270
XspI	CTAG	2 cut(s)	294, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.