RLG00000023223

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0008974
Physical Location & Seq
Forward (+)
20137576 .. 20143505
5930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023223

Sequence Viewer

Length: 1395 bp
ATGGCGGGTCTCCACTCTTCTTCCTCCTCCTCTGCATCATCTTCCTTTCAAACCTTTGCTTCCCGTCTTCTCTTGCTCCTCACCGTCCTCCCTCTCACTCTCGCCGTCTTTGCTTTCGTTCTCCAATGGCATGGCGGTCTCAACGATCCCGTCACCCGCTGGTCACCTGACCACCACGAGTTCCCCAGCATGGGCAGCCACCCTAGAACCGTAGCTCACGCTTCTTCACATTCTTCCGACTGCGTCGATCCTCTCGGTCAGAGCCGCTCACCGTCGTTCCCATACTATAGGGGCTGGAAGTTTGATTACACTTCCAATCTGAGTCCCCAGATATGTATTCAAACAAGCACTTCTGCTGGTTTAGAGCAAACTTTGCCATGGATCTTCTATCATAAGGTTATTGGAGTTTCGAATTTTCTCCTTTTTGTGGAAGGGCAGGCTGCATCTCCGAATGTAACTAAAGTCTTAGAAACCATTCCAGGAGTGAAGGTTATACACAGAACAAGGGAATTAGAGGAGCAACAAGCTAAAAGCCGAATTTGGAACGAGACTTGGCTGTCAAGCTTCTTCTATAAACCATGTAATTATGAGTTGTTTGTAAAGCAATCTCTTAACATGGAGATGGCTATTGTCATGGCAAGGGAAGCTGGCATGGATTGGATTATTCATCTTGATACTGATGAGCTAATATATCCAGCGGGCACTCGAGAGTACTCTTTGAGACAGTTGTTATCCGATGTGCCTGGAGATGCTGATATGGTTATCTTTCCAAATTATGAAAGTAGTGTAGAGCGAGATGATATCAAGGAACCTTTTAGTGAGGTTTCAATGTTCAAGAAAAACTATGACCATCTTCCAAAAGATGTATATTTTGGCAATTATAGAGAAGCAACAAGGGGTAATCCAAACTATTATCTAACATATGGAAATGGAAAATCAGCTGCTCGAATTCAAGATCACCTCCGCCCTAATGGTGCACACAGATGGCACAATTATATGAAGACACCAAATGAGATTAAATTGGAGGAGGCTGCTATTCTGCATTATACATATCCCAAATTTTCAGATTTGACCTCTAGACGTGATCGGTGTGGTTGCAAACCTACGAAGGAGGATGTTAAAAGATGCTTTATGTTGGAATTTGACAGAGTTGCATTCATAATTGCTTCAACGGCAACACAGGATGAAATGCTTAACTGGTACCGCGAACACATTGTGTGGACTGACAAAGCACTAAAATTAAAACTATTGAGAAAGGGCATCTTGACTCGGATTTATGCCCCAATGAAATTCAATAAATGGCGGGTAATGGGGGGTAATTTGAATAAGATGGCGGGATTGTTGGGAATGGGTGACAAACTGTTTGGAATGGGTGACAAACTTGGGAATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

465

Amino Acids

53.03

Weight (kDa)

8.53

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_92 PF01697 112 - 355 1.1e-06 Glycosyltransferase family 92
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 556
Acc65I GGTACC 1 cut(s) 1200
AccB1I GGYRCC 1 cut(s) 1200
AccBSI CCGCTC 1 cut(s) 267
AccII CGCG 1 cut(s) 1206
AciI CCGC 9 cut(s) 5, 135, 157, 265, 698, 964, 1204, 1303, 1334
AclWI GGATC 3 cut(s) 140, 242, 389
AcsI RAATTY 6 cut(s) 412, 537, 948, 1058, 1139, 1289
AdeI CACNNNGTG 1 cut(s) 1216
AfaI GTAC 2 cut(s) 713, 1202
AfiI CCNNNNNNNGG 3 cut(s) 190, 191, 427
AgsI TTSAA 8 cut(s) 50, 341, 828, 835, 953, 1170, 1294, 1324
AjiI CACGTC 1 cut(s) 1082
AjnI CCWGG 2 cut(s) 478, 742
AluBI AGCT 6 cut(s) 215, 527, 564, 647, 685, 941
AluI AGCT 6 cut(s) 215, 527, 564, 647, 685, 941
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 4 cut(s) 14, 143, 542, 715
Alw44I GTGCAC 1 cut(s) 975
AlwI GGATC 3 cut(s) 140, 242, 389
Ama87I CYCGRG 1 cut(s) 705
ApaLI GTGCAC 1 cut(s) 975
ApeKI GCWGC 4 cut(s) 195, 440, 941, 1031
ApoI RAATTY 6 cut(s) 412, 537, 948, 1058, 1139, 1289
ArsI GACNNNNNNTTYG 2 cut(s) 1346, 1378
Asp700I GAANNNNTTC 1 cut(s) 474
Asp718I GGTACC 1 cut(s) 1200
AsuHPI GGTGA 7 cut(s) 73, 145, 156, 261, 950, 1364, 1385
AsuII TTCGAA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 705
BaeGI GKGCMC 2 cut(s) 704, 979
BanI GGYRCC 1 cut(s) 1200
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 2 cut(s) 59, 1007
Bbv12I GWGCWC 1 cut(s) 979
BbvI GCAGC 4 cut(s) 207, 427, 928, 1018
BccI CCATC 4 cut(s) 616, 858, 978, 1324
BceAI ACGGC 2 cut(s) 89, 1188
BciT130I CCWGG 2 cut(s) 480, 744
BcoDI GTCTC 4 cut(s) 14, 143, 542, 715
BfaI CTAG 2 cut(s) 204, 1077
BfmI CTRYAG 1 cut(s) 286
BisI GCNGC 5 cut(s) 196, 265, 441, 942, 1032
BlsI GCNGC 5 cut(s) 197, 266, 442, 943, 1033
BmcAI AGTACT 1 cut(s) 713
Bme1390I CCNGG 2 cut(s) 480, 744
BmeT110I CYCGRG 1 cut(s) 705
BmgBI CACGTC 1 cut(s) 1082
BmiI GGNNCC 2 cut(s) 810, 1202
BmrFI CCNGG 2 cut(s) 480, 744
BmsI GCATC 5 cut(s) 44, 452, 739, 1115, 1269
BpiI GAAGAC 2 cut(s) 59, 1007
BpmI CTGGAG 1 cut(s) 765
Bpu14I TTCGAA 1 cut(s) 410
BsaI GGTCTC 2 cut(s) 14, 143
BsaJI CCNNGG 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 474, 504
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 191, 427
Bse1I ACTGG 1 cut(s) 1202
BseBI CCWGG 2 cut(s) 480, 744
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 2 cut(s) 1120, 1189
BseLI CCNNNNNNNGG 3 cut(s) 190, 191, 427
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 1202
BseRI GAGGAG 5 cut(s) 16, 19, 68, 530, 1040
BseSI GKGCMC 2 cut(s) 704, 979
BseXI GCAGC 4 cut(s) 207, 427, 928, 1018
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 1 cut(s) 1206
BshNI GGYRCC 1 cut(s) 1200
BsiHKAI GWGCWC 1 cut(s) 979
BsiHKCI CYCGRG 1 cut(s) 705
BslFI GGGAC 1 cut(s) 309
BslI CCNNNNNNNGG 3 cut(s) 190, 191, 427
BsmAI GTCTC 4 cut(s) 14, 143, 542, 715
BsmFI GGGAC 1 cut(s) 309
BsmI GAATGC 1 cut(s) 1154
Bso31I GGTCTC 2 cut(s) 14, 143
BsoBI CYCGRG 1 cut(s) 705
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 704, 979
Bsp143I GATC 5 cut(s) 145, 247, 381, 955, 1084
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 9 cut(s) 5, 135, 157, 265, 698, 964, 1204, 1303, 1334
BspCNI CTCAG 1 cut(s) 312
BspFNI CGCG 1 cut(s) 1206
BspLI GGNNCC 2 cut(s) 810, 1202
BspPI GGATC 3 cut(s) 140, 242, 389
BspT104I TTCGAA 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 1200
BspTNI GGTCTC 2 cut(s) 14, 143
BsrBI CCGCTC 1 cut(s) 267
BsrI ACTGG 1 cut(s) 1202
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 5 cut(s) 145, 247, 381, 955, 1084
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 480, 744
Bst4CI ACNGT 5 cut(s) 85, 211, 273, 726, 1362
Bst6I CTCTTC 1 cut(s) 22
BstAPI GCANNNNNTGC 1 cut(s) 373
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 3 cut(s) 438, 649, 700
BstDEI CTNAG 2 cut(s) 320, 466
BstDSI CCRYGG 1 cut(s) 377
BstEII GGTNACC 1 cut(s) 162
BstF5I GGATG 2 cut(s) 1120, 1189
BstFNI CGCG 1 cut(s) 1206
BstKTI GATC 5 cut(s) 148, 250, 384, 958, 1087
BstMAI GTCTC 4 cut(s) 14, 143, 542, 715
BstMBI GATC 5 cut(s) 145, 247, 381, 955, 1084
BstMWI GCNNNNNNNGC 5 cut(s) 110, 195, 373, 644, 1172
BstNI CCWGG 2 cut(s) 480, 744
BstPI GGTNACC 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 478, 742
BstSFI CTRYAG 1 cut(s) 286
BstSLI GKGCMC 2 cut(s) 704, 979
BstUI CGCG 1 cut(s) 1206
BstV1I GCAGC 4 cut(s) 207, 427, 928, 1018
BstV2I GAAGAC 2 cut(s) 59, 1007
BstX2I RGATCY 1 cut(s) 381
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 377
BtrI CACGTC 1 cut(s) 1082
BtsCI GGATG 2 cut(s) 1120, 1189
Cac8I GCNNGC 3 cut(s) 438, 649, 700
CseI GACGC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 712, 1201
CviAII CATG 7 cut(s) 131, 190, 378, 579, 616, 634, 652
CviQI GTAC 2 cut(s) 712, 1201
DdeI CTNAG 2 cut(s) 320, 466
DpnI GATC 5 cut(s) 147, 249, 383, 957, 1086
DpnII GATC 5 cut(s) 145, 247, 381, 955, 1084
DraIII CACNNNGTG 1 cut(s) 1216
DrdI GACNNNNNNGTC 1 cut(s) 556
DseDI GACNNNNNNGTC 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 953
Eco130I CCWWGG 1 cut(s) 377
Eco31I GGTCTC 2 cut(s) 14, 143
Eco32I GATATC 1 cut(s) 802
Eco88I CYCGRG 1 cut(s) 705
Eco91I GGTNACC 1 cut(s) 162
EcoO65I GGTNACC 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 948
EcoRII CCWGG 2 cut(s) 478, 742
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 7 cut(s) 134, 193, 381, 582, 619, 637, 655
FalI AAGNNNNNCTT 2 cut(s) 1247, 1279
FaqI GGGAC 1 cut(s) 309
FatI CATG 7 cut(s) 130, 189, 377, 578, 615, 633, 651
FauI CCCGC 4 cut(s) 164, 691, 1296, 1327
FauNDI CATATG 1 cut(s) 922
Fnu4HI GCNGC 5 cut(s) 196, 265, 441, 942, 1032
FokI GGATG 2 cut(s) 1127, 1196
Fsp4HI GCNGC 5 cut(s) 196, 265, 441, 942, 1032
FspBI CTAG 2 cut(s) 204, 1077
GluI GCNGC 5 cut(s) 196, 265, 441, 942, 1032
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 765
HgaI GACGC 1 cut(s) 232
Hin1II CATG 7 cut(s) 134, 193, 381, 582, 619, 637, 655
HindIII AAGCTT 1 cut(s) 562
HinfI GANTC 2 cut(s) 322, 1267
HphI GGTGA 7 cut(s) 73, 145, 156, 261, 950, 1364, 1385
Hpy166II GTNNAC 2 cut(s) 977, 1221
Hpy188I TCNGA 7 cut(s) 238, 261, 321, 450, 736, 1066, 1272
Hpy188III TCNNGA 6 cut(s) 671, 707, 835, 953, 1077, 1264
Hpy8I GTNNAC 2 cut(s) 977, 1221
Hpy99I CGWCG 2 cut(s) 248, 277
HpyAV CCTTC 3 cut(s) 425, 481, 1102
HpyCH4III ACNGT 5 cut(s) 85, 211, 273, 726, 1362
HpyCH4IV ACGT 1 cut(s) 1081
HpyCH4V TGCA 6 cut(s) 35, 443, 977, 1042, 1098, 1154
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 195, 373, 644, 1172
HpyF3I CTNAG 2 cut(s) 320, 466
HpySE526I ACGT 1 cut(s) 1081
Hsp92II CATG 7 cut(s) 134, 193, 381, 582, 619, 637, 655
KpnI GGTACC 1 cut(s) 1204
Kzo9I GATC 5 cut(s) 145, 247, 381, 955, 1084
LmnI GCTCC 2 cut(s) 81, 517
Lsp1109I GCAGC 4 cut(s) 207, 427, 928, 1018
LweI GCATC 5 cut(s) 44, 452, 739, 1115, 1269
MaeI CTAG 2 cut(s) 204, 1077
MaeII ACGT 1 cut(s) 1081
MaeIII GTNAC 5 cut(s) 151, 162, 454, 1352, 1373
MalI GATC 5 cut(s) 147, 249, 383, 957, 1086
MbiI CCGCTC 1 cut(s) 267
MboI GATC 5 cut(s) 145, 247, 381, 955, 1084
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 2 cut(s) 704, 979
MlyI GAGTC 2 cut(s) 331, 1261
MmeI TCCRAC 2 cut(s) 261, 1116
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 5 cut(s) 612, 1017, 1119, 1194, 1241
MslI CAYNNNNRTG 2 cut(s) 620, 982
MspA1I CMGCKG 3 cut(s) 159, 698, 941
MspR9I CCNGG 2 cut(s) 480, 744
Mva1269I GAATGC 1 cut(s) 1154
MvaI CCWGG 2 cut(s) 480, 744
MvnI CGCG 1 cut(s) 1206
MwoI GCNNNNNNNGC 5 cut(s) 110, 195, 373, 644, 1172
NcoI CCATGG 1 cut(s) 377
NdeI CATATG 1 cut(s) 922
NdeII GATC 5 cut(s) 145, 247, 381, 955, 1084
NlaIII CATG 7 cut(s) 134, 193, 381, 582, 619, 637, 655
NlaIV GGNNCC 2 cut(s) 810, 1202
NmuCI GTSAC 4 cut(s) 151, 162, 1352, 1373
NspV TTCGAA 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 705
PctI GAATGC 1 cut(s) 1154
PdmI GAANNNNTTC 1 cut(s) 474
PflFI GACNNNGTC 1 cut(s) 242
PfoI TCCNGGA 1 cut(s) 478
PkrI GCNGC 5 cut(s) 197, 266, 442, 943, 1033
PleI GAGTC 2 cut(s) 330, 1261
PpsI GAGTC 2 cut(s) 330, 1261
Psp6I CCWGG 2 cut(s) 478, 742
PspEI GGTNACC 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 2 cut(s) 478, 742
PspN4I GGNNCC 2 cut(s) 810, 1202
PsuI RGATCY 1 cut(s) 381
PsyI GACNNNGTC 1 cut(s) 242
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 2 cut(s) 713, 1202
RsaNI GTAC 2 cut(s) 712, 1201
RseI CAYNNNNRTG 2 cut(s) 620, 982
SaqAI TTAA 5 cut(s) 612, 1017, 1119, 1194, 1241
SatI GCNGC 5 cut(s) 196, 265, 441, 942, 1032
Sau3AI GATC 5 cut(s) 145, 247, 381, 955, 1084
ScaI AGTACT 1 cut(s) 713
SchI GAGTC 2 cut(s) 331, 1261
ScrFI CCNGG 2 cut(s) 480, 744
SduI GDGCHC 2 cut(s) 704, 979
SfaNI GCATC 5 cut(s) 44, 452, 739, 1115, 1269
SfcI CTRYAG 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 705
SfuI TTCGAA 1 cut(s) 410
SlaI CTCGAG 1 cut(s) 705
SmiMI CAYNNNNRTG 2 cut(s) 620, 982
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
SsiI CCGC 9 cut(s) 5, 135, 157, 265, 698, 964, 1204, 1303, 1334
SspMI CTAG 2 cut(s) 204, 1077
StyD4I CCNGG 2 cut(s) 478, 742
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 5 cut(s) 85, 211, 273, 726, 1362
TaiI ACGT 1 cut(s) 1084
TaqI TCGA 4 cut(s) 246, 410, 706, 946
TaqII GACCGA 1 cut(s) 245
TatI WGTACW 1 cut(s) 711
TauI GCSGC 1 cut(s) 267
Tru1I TTAA 5 cut(s) 612, 1017, 1119, 1194, 1241
Tru9I TTAA 5 cut(s) 612, 1017, 1119, 1194, 1241
TseFI GTSAC 4 cut(s) 151, 162, 1352, 1373
TseI GCWGC 4 cut(s) 195, 440, 941, 1031
Tsp45I GTSAC 4 cut(s) 151, 162, 1352, 1373
TspDTI ATGAA 6 cut(s) 656, 792, 1013, 1147, 1200, 1301
Tth111I GACNNNGTC 1 cut(s) 242
VneI GTGCAC 1 cut(s) 975
XapI RAATTY 6 cut(s) 412, 537, 948, 1058, 1139, 1289
XbaI TCTAGA 1 cut(s) 1076
XhoI CTCGAG 1 cut(s) 705
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 2 cut(s) 204, 1077
ZrmI AGTACT 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.