Rroxscaffold_6G00397660

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008974
Physical Location & Seq
Forward (+)
19357121 .. 19363166
6046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397660.1

Sequence Viewer

Length: 1461 bp
ATGGCGGGTCACCACTCTTCTTCCTCCTCCTCCTCTGCATCATCTTCCTTTCAGACGTTTGCTTCCCGCCTTCTCTTGCTCCTCACTGTCCTCCCTCTCACTCTCGCCGTCTTTGCTTTCGTTCTTCAATGGCGTGGCGGTCTCAACGATCCCGTCACCCGCTGGTCACCTAACCACCACGAGTTCCCCGGCATGGGCAGCCTCCACAGGCCCGTAGTCCACGCTTCTTCACGTTCTTCCGACTGCGTCGATCCTCTAGGCCAGAGCCGCTCACCGTCGTTCCCATACTATAGGGACTGGAAGTTTGATTACGCTTCCGATCTGAGGCCCCAGATATGTATTCAAACAAGCACTTCTGCTGGTTTAGAACAAACTTTGCCGTGGATCTTCTATCATAAGGTTATTGGAGTTTCGAATTTTCTCCTTTTTGTGGAAGGGCAGGCTGCATCTCCAAATGTAACTAGAGTCTTAGAAACCATTCCAGGAGTGAAGCTTATACACAGGACAAGGGAATTAGAGGAGCAACAAGCTAAAAGCCGAATTTGGAACGAGACTTGGCTGTCAAGCTTTTTCTATAAACCATGTAATTATGAGCTGTTTGTAAAGCAATCCCTTAACATGGAGATGGCTATTGTGATGGCAAGGGAAGCTGGCATGGATTGGATTATCCATCTTGATACTGATGAGCTAATATATCCAGCTGGCACTCGAGAGTACTCTTTGAGACAGTTGTTATCCGATGTGCCTGGAGATGCTGATATGGTTGTCTTTCCAAATTATGAAAGTAGTGTAGAGCGAGACGATATCAAGGAACCTTTCAGTGAGGTTTCAATGTTCAAGAAAAACTATGACCATCTTCCAAAAGATGTATATTTTGGCAATTATAGAGAAGCAACAAGGGGTAATCCAAACTATTATTTAACATATGGAAATGGAAAATCAGCTGCTCGAATTCAAGATCACCTCCGCCCTAATGGTGCACACAGATGGCACAATTATATGAAGACACCAAAGTACGGTTATTATGCATTCATAATTGCTTCAACGGCAACACAGGACGAAATGCTTAGCTGGTACCGAGAACGCATTGTGTGGACTGACAAAGCACTAAACTTAAAACTATTGAGAAAGGGCATCTTGACTCGGATTTATGCACCAATGATCATCATACAAGGTTTGAGGGAATCTGGTGTTTTCAGCTCCGTAATTGCATCAGCTGTAAAAGTAACTCTCTCAAAAGATCAGTTCTTGTTGTCTGTTGAGAGTAGCAACTCCTCTAGGGAAACCACATATGGAGCAATTACTTCGAGGAAGATTGGTAAAACATTTGATTCCCAAGCAACTGCAAGAAAATTCCTGGAATTCAGAGCCAATACTTCGCACCCTTTGGCAATTGCACCATTATCTCCGCCTGGCTTGGATGATTTTTCATTTGAAACACAAATGTTTTCTAAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

486

Amino Acids

55.23

Weight (kDa)

8.69

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 559
Acc65I GGTACC 1 cut(s) 1074
AccB1I GGYRCC 1 cut(s) 1074
AccBSI CCGCTC 1 cut(s) 270
AciI CCGC 7 cut(s) 5, 67, 138, 160, 268, 967, 1409
AclWI GGATC 3 cut(s) 143, 245, 392
AcsI RAATTY 5 cut(s) 415, 540, 951, 1352, 1361
AfaI GTAC 3 cut(s) 716, 1016, 1076
AfiI CCNNNNNNNGG 6 cut(s) 193, 194, 324, 430, 619, 1016
AgsI TTSAA 7 cut(s) 128, 344, 831, 838, 956, 1044, 1436
AjnI CCWGG 4 cut(s) 481, 745, 1356, 1411
Alw21I GWGCWC 1 cut(s) 982
Alw26I GTCTC 4 cut(s) 146, 545, 718, 792
Alw44I GTGCAC 1 cut(s) 978
AlwI GGATC 3 cut(s) 143, 245, 392
Ama87I CYCGRG 1 cut(s) 708
AoxI GGCC 3 cut(s) 209, 259, 326
ApaLI GTGCAC 1 cut(s) 978
ApeKI GCWGC 3 cut(s) 198, 443, 944
ApoI RAATTY 5 cut(s) 415, 540, 951, 1352, 1361
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp700I GAANNNNTTC 1 cut(s) 477
Asp718I GGTACC 1 cut(s) 1074
AspS9I GGNCC 2 cut(s) 210, 327
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 4 cut(s) 148, 159, 264, 953
AsuII TTCGAA 1 cut(s) 413
AvaI CYCGRG 1 cut(s) 708
BaeGI GKGCMC 1 cut(s) 982
BanI GGYRCC 1 cut(s) 1074
BarI GAAGNNNNNNTAC 2 cut(s) 293, 325
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 1010
Bbv12I GWGCWC 1 cut(s) 982
BbvI GCAGC 3 cut(s) 210, 430, 931
BccI CCATC 5 cut(s) 619, 631, 678, 861, 981
BceAI ACGGC 3 cut(s) 92, 364, 1062
BcgI CGANNNNNNTGC 2 cut(s) 1287, 1321
BciT130I CCWGG 4 cut(s) 483, 747, 1358, 1413
BclI TGATCA 1 cut(s) 1161
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 4 cut(s) 146, 545, 718, 792
BfaI CTAG 3 cut(s) 257, 462, 1278
BfmI CTRYAG 1 cut(s) 289
BisI GCNGC 4 cut(s) 199, 268, 444, 945
BlpI GCTNAGC 1 cut(s) 1067
BlsI GCNGC 4 cut(s) 200, 269, 445, 946
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 5 cut(s) 189, 483, 747, 1358, 1413
BmeT110I CYCGRG 1 cut(s) 708
BmgT120I GGNCC 2 cut(s) 210, 327
BmiI GGNNCC 3 cut(s) 329, 813, 1076
BmrFI CCNGG 5 cut(s) 189, 483, 747, 1358, 1413
BmsI GCATC 5 cut(s) 47, 455, 742, 1143, 1220
BpiI GAAGAC 1 cut(s) 1010
BpmI CTGGAG 1 cut(s) 768
Bpu1102I GCTNAGC 1 cut(s) 1067
Bpu14I TTCGAA 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 187, 380
Bsc4I CCNNNNNNNGG 6 cut(s) 193, 194, 324, 430, 619, 1016
Bse1I ACTGG 1 cut(s) 302
BseBI CCWGG 4 cut(s) 483, 747, 1358, 1413
BseDI CCNNGG 2 cut(s) 187, 380
BseGI GGATG 1 cut(s) 1426
BseLI CCNNNNNNNGG 6 cut(s) 193, 194, 324, 430, 619, 1016
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 6 cut(s) 16, 19, 22, 71, 533, 1264
BseSI GKGCMC 1 cut(s) 982
BseXI GCAGC 3 cut(s) 210, 430, 931
BshFI GGCC 3 cut(s) 211, 261, 328
BshNI GGYRCC 1 cut(s) 1074
BsiHKAI GWGCWC 1 cut(s) 982
BsiHKCI CYCGRG 1 cut(s) 708
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 6 cut(s) 193, 194, 324, 430, 619, 1016
BsmAI GTCTC 4 cut(s) 146, 545, 718, 792
BsmBI CGTCTC 1 cut(s) 792
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 1028
BsnI GGCC 3 cut(s) 211, 261, 328
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 708
Bsp119I TTCGAA 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 982
Bsp143I GATC 7 cut(s) 148, 250, 319, 384, 958, 1161, 1240
Bsp1720I GCTNAGC 1 cut(s) 1067
BspACI CCGC 7 cut(s) 5, 67, 138, 160, 268, 967, 1409
BspANI GGCC 3 cut(s) 211, 261, 328
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 3 cut(s) 329, 813, 1076
BspPI GGATC 3 cut(s) 143, 245, 392
BspT104I TTCGAA 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 1074
BspTNI GGTCTC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 187, 380
BssMI GATC 7 cut(s) 148, 250, 319, 384, 958, 1161, 1240
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 4 cut(s) 483, 747, 1358, 1413
Bst4CI ACNGT 4 cut(s) 88, 276, 729, 1019
Bst6I CTCTTC 1 cut(s) 22
BstBI TTCGAA 1 cut(s) 413
BstC8I GCNNGC 3 cut(s) 441, 652, 703
BstDEI CTNAG 3 cut(s) 323, 469, 1067
BstDSI CCRYGG 1 cut(s) 380
BstEII GGTNACC 2 cut(s) 8, 165
BstF5I GGATG 1 cut(s) 1426
BstKTI GATC 7 cut(s) 151, 253, 322, 387, 961, 1164, 1243
BstMAI GTCTC 4 cut(s) 146, 545, 718, 792
BstMBI GATC 7 cut(s) 148, 250, 319, 384, 958, 1161, 1240
BstMWI GCNNNNNNNGC 5 cut(s) 113, 198, 267, 647, 1046
BstNI CCWGG 4 cut(s) 483, 747, 1358, 1413
BstPI GGTNACC 2 cut(s) 8, 165
BstSCI CCNGG 5 cut(s) 187, 481, 745, 1356, 1411
BstSFI CTRYAG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 982
BstV1I GCAGC 3 cut(s) 210, 430, 931
BstV2I GAAGAC 1 cut(s) 1010
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
BsuRI GGCC 3 cut(s) 211, 261, 328
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 1 cut(s) 1426
BtsIMutI CAGTG 2 cut(s) 84, 826
Cac8I GCNNGC 3 cut(s) 441, 652, 703
Cfr13I GGNCC 2 cut(s) 210, 327
CseI GACGC 1 cut(s) 235
Csp6I GTAC 3 cut(s) 715, 1015, 1075
CviAII CATG 4 cut(s) 193, 582, 619, 655
CviQI GTAC 3 cut(s) 715, 1015, 1075
DdeI CTNAG 3 cut(s) 323, 469, 1067
DpnI GATC 7 cut(s) 150, 252, 321, 386, 960, 1163, 1242
DpnII GATC 7 cut(s) 148, 250, 319, 384, 958, 1161, 1240
DrdI GACNNNNNNGTC 1 cut(s) 559
DseDI GACNNNNNNGTC 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 2 cut(s) 956, 1398
Eco31I GGTCTC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 805
Eco88I CYCGRG 1 cut(s) 708
Eco91I GGTNACC 2 cut(s) 8, 165
EcoO109I RGGNCCY 1 cut(s) 327
EcoO65I GGTNACC 2 cut(s) 8, 165
EcoRI GAATTC 2 cut(s) 951, 1361
EcoRII CCWGG 4 cut(s) 481, 745, 1356, 1411
EcoRV GATATC 1 cut(s) 805
EcoT22I ATGCAT 1 cut(s) 1030
Esp3I CGTCTC 1 cut(s) 792
FaeI CATG 4 cut(s) 196, 585, 622, 658
FalI AAGNNNNNCTT 2 cut(s) 1121, 1153
FaqI GGGAC 1 cut(s) 308
FatI CATG 4 cut(s) 192, 581, 618, 654
FauI CCCGC 2 cut(s) 74, 167
FauNDI CATATG 2 cut(s) 925, 1291
FbaI TGATCA 1 cut(s) 1161
Fnu4HI GCNGC 4 cut(s) 199, 268, 444, 945
FokI GGATG 1 cut(s) 1433
Fsp4HI GCNGC 4 cut(s) 199, 268, 444, 945
FspBI CTAG 3 cut(s) 257, 462, 1278
GluI GCNGC 4 cut(s) 199, 268, 444, 945
GsuI CTGGAG 1 cut(s) 768
HaeIII GGCC 3 cut(s) 211, 261, 328
HapII CCGG 1 cut(s) 189
HgaI GACGC 1 cut(s) 235
Hin1II CATG 4 cut(s) 196, 585, 622, 658
HindIII AAGCTT 2 cut(s) 491, 565
HinfI GANTC 4 cut(s) 465, 1141, 1184, 1331
HpaII CCGG 1 cut(s) 189
HphI GGTGA 4 cut(s) 148, 159, 264, 953
Hpy166II GTNNAC 3 cut(s) 220, 980, 1095
Hpy188I TCNGA 7 cut(s) 54, 241, 319, 324, 739, 1146, 1367
Hpy188III TCNNGA 5 cut(s) 674, 710, 838, 956, 1138
Hpy8I GTNNAC 3 cut(s) 220, 980, 1095
Hpy99I CGWCG 2 cut(s) 251, 280
HpyAV CCTTC 2 cut(s) 80, 428
HpyCH4III ACNGT 4 cut(s) 88, 276, 729, 1019
HpyCH4IV ACGT 2 cut(s) 56, 232
HpyCH4V TGCA 8 cut(s) 38, 446, 980, 1028, 1154, 1211, 1346, 1397
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 198, 267, 647, 1046
HpyF3I CTNAG 3 cut(s) 323, 469, 1067
HpySE526I ACGT 2 cut(s) 56, 232
Hsp92II CATG 4 cut(s) 196, 585, 622, 658
KpnI GGTACC 1 cut(s) 1078
Ksp22I TGATCA 1 cut(s) 1161
Kzo9I GATC 7 cut(s) 148, 250, 319, 384, 958, 1161, 1240
LmnI GCTCC 4 cut(s) 84, 520, 1205, 1295
Lsp1109I GCAGC 3 cut(s) 210, 430, 931
LweI GCATC 5 cut(s) 47, 455, 742, 1143, 1220
MaeI CTAG 3 cut(s) 257, 462, 1278
MaeII ACGT 2 cut(s) 56, 232
MaeIII GTNAC 5 cut(s) 8, 154, 165, 457, 1225
MalI GATC 7 cut(s) 150, 252, 321, 386, 960, 1163, 1242
MbiI CCGCTC 1 cut(s) 270
MboI GATC 7 cut(s) 148, 250, 319, 384, 958, 1161, 1240
MfeI CAATTG 1 cut(s) 1392
MflI RGATCY 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 982
MlyI GAGTC 2 cut(s) 474, 1135
MmeI TCCRAC 1 cut(s) 264
Mph1103I ATGCAT 1 cut(s) 1030
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 3 cut(s) 615, 920, 1115
MslI CAYNNNNRTG 2 cut(s) 623, 985
MspA1I CMGCKG 4 cut(s) 162, 701, 944, 1217
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 5 cut(s) 189, 483, 747, 1358, 1413
MunI CAATTG 1 cut(s) 1392
Mva1269I GAATGC 1 cut(s) 1028
MvaI CCWGG 4 cut(s) 483, 747, 1358, 1413
MwoI GCNNNNNNNGC 5 cut(s) 113, 198, 267, 647, 1046
NciI CCSGG 1 cut(s) 189
NdeI CATATG 2 cut(s) 925, 1291
NdeII GATC 7 cut(s) 148, 250, 319, 384, 958, 1161, 1240
NlaIII CATG 4 cut(s) 196, 585, 622, 658
NlaIV GGNNCC 3 cut(s) 329, 813, 1076
NmuCI GTSAC 3 cut(s) 8, 154, 165
NsiI ATGCAT 1 cut(s) 1030
NspV TTCGAA 1 cut(s) 413
PaeR7I CTCGAG 1 cut(s) 708
PctI GAATGC 1 cut(s) 1028
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 2 cut(s) 1184, 1331
PflFI GACNNNGTC 1 cut(s) 245
PfoI TCCNGGA 2 cut(s) 481, 1356
PkrI GCNGC 4 cut(s) 200, 269, 445, 946
PleI GAGTC 2 cut(s) 473, 1135
PpsI GAGTC 2 cut(s) 473, 1135
Psp6I CCWGG 4 cut(s) 481, 745, 1356, 1411
PspEI GGTNACC 2 cut(s) 8, 165
PspGI CCWGG 4 cut(s) 481, 745, 1356, 1411
PspN4I GGNNCC 3 cut(s) 329, 813, 1076
PspPI GGNCC 2 cut(s) 210, 327
PsuI RGATCY 1 cut(s) 384
PsyI GACNNNGTC 1 cut(s) 245
PvuII CAGCTG 3 cut(s) 701, 944, 1217
RsaI GTAC 3 cut(s) 716, 1016, 1076
RsaNI GTAC 3 cut(s) 715, 1015, 1075
RseI CAYNNNNRTG 2 cut(s) 623, 985
SaqAI TTAA 3 cut(s) 615, 920, 1115
SatI GCNGC 4 cut(s) 199, 268, 444, 945
Sau3AI GATC 7 cut(s) 148, 250, 319, 384, 958, 1161, 1240
Sau96I GGNCC 2 cut(s) 210, 327
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 2 cut(s) 474, 1135
ScrFI CCNGG 5 cut(s) 189, 483, 747, 1358, 1413
SduI GDGCHC 1 cut(s) 982
SfaNI GCATC 5 cut(s) 47, 455, 742, 1143, 1220
SfcI CTRYAG 1 cut(s) 289
Sfr274I CTCGAG 1 cut(s) 708
SfuI TTCGAA 1 cut(s) 413
SlaI CTCGAG 1 cut(s) 708
SmiMI CAYNNNNRTG 2 cut(s) 623, 985
SmlI CTYRAG 1 cut(s) 708
SmoI CTYRAG 1 cut(s) 708
SsiI CCGC 7 cut(s) 5, 67, 138, 160, 268, 967, 1409
SspMI CTAG 3 cut(s) 257, 462, 1278
StyD4I CCNGG 5 cut(s) 187, 481, 745, 1356, 1411
TaaI ACNGT 4 cut(s) 88, 276, 729, 1019
TaiI ACGT 2 cut(s) 59, 235
TaqI TCGA 5 cut(s) 249, 413, 709, 949, 1307
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 2 cut(s) 1184, 1331
Tru1I TTAA 3 cut(s) 615, 920, 1115
Tru9I TTAA 3 cut(s) 615, 920, 1115
TscAI CASTG 2 cut(s) 91, 826
TseFI GTSAC 3 cut(s) 8, 154, 165
TseI GCWGC 3 cut(s) 198, 443, 944
Tsp45I GTSAC 3 cut(s) 8, 154, 165
TspDTI ATGAA 4 cut(s) 795, 1016, 1021, 1419
TspGWI ACGGA 1 cut(s) 1192
TspRI CASTG 2 cut(s) 91, 826
Tth111I GACNNNGTC 1 cut(s) 245
VneI GTGCAC 1 cut(s) 978
XapI RAATTY 5 cut(s) 415, 540, 951, 1352, 1361
XhoI CTCGAG 1 cut(s) 708
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 3 cut(s) 257, 462, 1278
ZrmI AGTACT 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.