Rh3AG262100

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008974
Physical Location & Seq
Reverse (-)
29153175 .. 29159892
6718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG262100.1

Sequence Viewer

Length: 1116 bp
ATGGCGGGTCACCACTCTTCCTCCTCCTCCTCTGCATCATCTTCCTTTCAGACCTTTGCTTCCCGCCTTCTCTTGCTCCTCACCGTCCTCCCTCTCACTCTCGCCGTCTTTGCTTTCGTTCTCCAATGGCGTGGCGGTCTCAACGATCCCGTCACCCGCTGGTCACCTAACCACCACGAGTTCCCCGGCATGGGCAGCCTCCCCAGGCCCGTAGTCCACGCTTCTTCACGTTCTTCCGACTGCGTCGATCCTCTCGGTCAGAGTCGCTCACCGTCGTTCCCATACTATAGGGACTGGAAGTTTGATTACGCTTCCGATCTGAGGCCCCAGATATGTATTCAAACAAGCACTTCTGCTGGTTTAGAACAAACTTTGCCATGGATCTTCTATCATAAGGTTGTTGGAGTTTCGAATTTTCTCCTTTTTGTGGAAGGGCAGGCTGCATCTCCGAATGTAACTAAAGTCTTAGAAACCATTCCAGGAGTGAAGGTTATACACAGGACAAGGGAATTAGAGGAGCAACAAGCTAAAAGCCGAATTTGGAACGAGACTTGGCTGTCAACCTTCTTCTATAAACCATGTAATTATGAGTTGTTTGTAAAGCAATCCCTTAACATGGAGATGGCTATTGTCATGGCAAGGGAAGCTGGCATGGATTGGATTATCCATCTTGATACTGATGAGCTAATATATCCAGCTGGCACTCGAGAGTACTCTTTGAGACAGTTGTTATCCGATGTGCCTGGAGATGCTGATATGGTTATCTTTCCAAATTATGAAAGTAGTGTAGAGCGAGACGATATCAAGGAACCTTTTAGTGAGGTTTCAATGTTCAAGAAAAACTATGACCATCTTCCAAAAGATGTATATTTTGGCAATTATAGAGAAGCAACAAGGGGTAATCCAAACTATTATTTAACATATGGAAATGGAAAATCAGCTGCTCGAATTCAAGATCACCTCCGCCCTAATGGTGCACACAGATGGCACAATTATATGAAGACACCAAAGTACGGTTATTATGTAATATTTCATCAACTTCTAAATATGTATCTATATAAAATTTCTATCAAATTTTTATTAGCTGATCAGGTATTCCATTCTATTACAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

371

Amino Acids

42.63

Weight (kDa)

7.25

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 556
AciI CCGC 5 cut(s) 5, 64, 135, 157, 964
AclWI GGATC 3 cut(s) 140, 242, 389
AcsI RAATTY 5 cut(s) 412, 537, 948, 1062, 1073
AfaI GTAC 2 cut(s) 713, 1013
AfiI CCNNNNNNNGG 6 cut(s) 190, 191, 321, 427, 616, 1013
AgsI TTSAA 4 cut(s) 341, 828, 835, 953
AjnI CCWGG 3 cut(s) 203, 478, 742
AluBI AGCT 6 cut(s) 527, 647, 685, 698, 941, 1085
AluI AGCT 6 cut(s) 527, 647, 685, 698, 941, 1085
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 4 cut(s) 143, 542, 715, 789
Alw44I GTGCAC 1 cut(s) 975
AlwI GGATC 3 cut(s) 140, 242, 389
Ama87I CYCGRG 1 cut(s) 705
AoxI GGCC 2 cut(s) 206, 323
ApaLI GTGCAC 1 cut(s) 975
ApeKI GCWGC 3 cut(s) 195, 440, 941
ApoI RAATTY 5 cut(s) 412, 537, 948, 1062, 1073
ArsI GACNNNNNNTTYG 2 cut(s) 284, 316
Asp700I GAANNNNTTC 1 cut(s) 474
AspS9I GGNCC 2 cut(s) 207, 324
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 5 cut(s) 73, 145, 156, 261, 950
AsuII TTCGAA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 705
BaeGI GKGCMC 1 cut(s) 979
BarI GAAGNNNNNNTAC 2 cut(s) 290, 322
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 1007
Bbv12I GWGCWC 1 cut(s) 979
BbvI GCAGC 3 cut(s) 207, 427, 928
BccI CCATC 4 cut(s) 616, 675, 858, 978
BceAI ACGGC 1 cut(s) 89
BciT130I CCWGG 3 cut(s) 205, 480, 744
BclI TGATCA 1 cut(s) 1087
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 4 cut(s) 143, 542, 715, 789
BfmI CTRYAG 1 cut(s) 286
BisI GCNGC 3 cut(s) 196, 441, 942
BlsI GCNGC 3 cut(s) 197, 442, 943
BmcAI AGTACT 1 cut(s) 713
Bme1390I CCNGG 4 cut(s) 186, 205, 480, 744
BmeT110I CYCGRG 1 cut(s) 705
BmgT120I GGNCC 2 cut(s) 207, 324
BmiI GGNNCC 2 cut(s) 326, 810
BmrFI CCNGG 4 cut(s) 186, 205, 480, 744
BmsI GCATC 3 cut(s) 44, 452, 739
BpiI GAAGAC 1 cut(s) 1007
BpmI CTGGAG 1 cut(s) 765
Bpu14I TTCGAA 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 3 cut(s) 184, 203, 377
BsaXI ACNNNNNCTCC 4 cut(s) 5, 35, 474, 504
Bsc4I CCNNNNNNNGG 6 cut(s) 190, 191, 321, 427, 616, 1013
Bse1I ACTGG 1 cut(s) 299
BseBI CCWGG 3 cut(s) 205, 480, 744
BseDI CCNNGG 3 cut(s) 184, 203, 377
BseLI CCNNNNNNNGG 6 cut(s) 190, 191, 321, 427, 616, 1013
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 5 cut(s) 13, 16, 19, 68, 530
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 3 cut(s) 207, 427, 928
BshFI GGCC 2 cut(s) 208, 325
BsiHKAI GWGCWC 1 cut(s) 979
BsiHKCI CYCGRG 1 cut(s) 705
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 6 cut(s) 190, 191, 321, 427, 616, 1013
BsmAI GTCTC 4 cut(s) 143, 542, 715, 789
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 2 cut(s) 208, 325
Bso31I GGTCTC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 705
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 979
Bsp143I GATC 6 cut(s) 145, 247, 316, 381, 955, 1087
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 5 cut(s) 5, 64, 135, 157, 964
BspANI GGCC 2 cut(s) 208, 325
BspCNI CTCAG 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 326, 810
BspPI GGATC 3 cut(s) 140, 242, 389
BspT104I TTCGAA 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 184, 203, 377
BssMI GATC 6 cut(s) 145, 247, 316, 381, 955, 1087
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 3 cut(s) 205, 480, 744
Bst4CI ACNGT 4 cut(s) 85, 273, 726, 1016
Bst6I CTCTTC 1 cut(s) 22
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 3 cut(s) 438, 649, 700
BstDEI CTNAG 2 cut(s) 320, 466
BstDSI CCRYGG 1 cut(s) 377
BstEII GGTNACC 2 cut(s) 8, 162
BstKTI GATC 6 cut(s) 148, 250, 319, 384, 958, 1090
BstMAI GTCTC 4 cut(s) 143, 542, 715, 789
BstMBI GATC 6 cut(s) 145, 247, 316, 381, 955, 1087
BstMWI GCNNNNNNNGC 3 cut(s) 110, 195, 644
BstNI CCWGG 3 cut(s) 205, 480, 744
BstPI GGTNACC 2 cut(s) 8, 162
BstSCI CCNGG 4 cut(s) 184, 203, 478, 742
BstSFI CTRYAG 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 979
BstV1I GCAGC 3 cut(s) 207, 427, 928
BstV2I GAAGAC 1 cut(s) 1007
BstX2I RGATCY 1 cut(s) 381
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 2 cut(s) 208, 325
BtgI CCRYGG 1 cut(s) 377
Cac8I GCNNGC 3 cut(s) 438, 649, 700
Cfr13I GGNCC 2 cut(s) 207, 324
CseI GACGC 1 cut(s) 232
Csp6I GTAC 2 cut(s) 712, 1012
CviAII CATG 6 cut(s) 190, 378, 579, 616, 634, 652
CviQI GTAC 2 cut(s) 712, 1012
DdeI CTNAG 2 cut(s) 320, 466
DpnI GATC 6 cut(s) 147, 249, 318, 383, 957, 1089
DpnII GATC 6 cut(s) 145, 247, 316, 381, 955, 1087
DrdI GACNNNNNNGTC 1 cut(s) 556
DseDI GACNNNNNNGTC 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 22
EarI CTCTTC 1 cut(s) 22
EciI GGCGGA 1 cut(s) 953
Eco130I CCWWGG 1 cut(s) 377
Eco31I GGTCTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 802
Eco88I CYCGRG 1 cut(s) 705
Eco91I GGTNACC 2 cut(s) 8, 162
EcoO109I RGGNCCY 1 cut(s) 324
EcoO65I GGTNACC 2 cut(s) 8, 162
EcoRI GAATTC 1 cut(s) 948
EcoRII CCWGG 3 cut(s) 203, 478, 742
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 1 cut(s) 377
ErhI CCWWGG 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 6 cut(s) 193, 381, 582, 619, 637, 655
FaqI GGGAC 1 cut(s) 305
FatI CATG 6 cut(s) 189, 377, 578, 615, 633, 651
FauI CCCGC 2 cut(s) 71, 164
FauNDI CATATG 1 cut(s) 922
FbaI TGATCA 1 cut(s) 1087
Fnu4HI GCNGC 3 cut(s) 196, 441, 942
Fsp4HI GCNGC 3 cut(s) 196, 441, 942
GluI GCNGC 3 cut(s) 196, 441, 942
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 2 cut(s) 208, 325
HapII CCGG 1 cut(s) 186
HgaI GACGC 1 cut(s) 232
Hin1II CATG 6 cut(s) 193, 381, 582, 619, 637, 655
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HinfI GANTC 1 cut(s) 262
HpaII CCGG 1 cut(s) 186
HphI GGTGA 5 cut(s) 73, 145, 156, 261, 950
Hpy166II GTNNAC 3 cut(s) 217, 561, 977
Hpy188I TCNGA 7 cut(s) 51, 238, 261, 316, 321, 450, 736
Hpy188III TCNNGA 4 cut(s) 671, 707, 835, 953
Hpy8I GTNNAC 3 cut(s) 217, 561, 977
Hpy99I CGWCG 2 cut(s) 248, 277
HpyAV CCTTC 4 cut(s) 77, 425, 481, 574
HpyCH4III ACNGT 4 cut(s) 85, 273, 726, 1016
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 35, 443, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 195, 644
HpyF3I CTNAG 2 cut(s) 320, 466
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 6 cut(s) 193, 381, 582, 619, 637, 655
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 6 cut(s) 145, 247, 316, 381, 955, 1087
LmnI GCTCC 2 cut(s) 81, 517
Lsp1109I GCAGC 3 cut(s) 207, 427, 928
LweI GCATC 3 cut(s) 44, 452, 739
MaeII ACGT 1 cut(s) 229
MaeIII GTNAC 4 cut(s) 8, 151, 162, 454
MalI GATC 6 cut(s) 147, 249, 318, 383, 957, 1089
MboI GATC 6 cut(s) 145, 247, 316, 381, 955, 1087
MboII GAAGA 8 cut(s) 9, 33, 216, 225, 376, 559, 845, 1012
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 979
MlyI GAGTC 1 cut(s) 271
MmeI TCCRAC 2 cut(s) 261, 382
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 2 cut(s) 612, 917
MslI CAYNNNNRTG 2 cut(s) 620, 982
MspA1I CMGCKG 3 cut(s) 159, 698, 941
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 4 cut(s) 186, 205, 480, 744
MvaI CCWGG 3 cut(s) 205, 480, 744
MwoI GCNNNNNNNGC 3 cut(s) 110, 195, 644
NciI CCSGG 1 cut(s) 186
NcoI CCATGG 1 cut(s) 377
NdeI CATATG 1 cut(s) 922
NdeII GATC 6 cut(s) 145, 247, 316, 381, 955, 1087
NlaIII CATG 6 cut(s) 193, 381, 582, 619, 637, 655
NlaIV GGNNCC 2 cut(s) 326, 810
NmuCI GTSAC 3 cut(s) 8, 151, 162
NspV TTCGAA 1 cut(s) 410
PaeR7I CTCGAG 1 cut(s) 705
PdmI GAANNNNTTC 1 cut(s) 474
PflFI GACNNNGTC 1 cut(s) 242
PfoI TCCNGGA 1 cut(s) 478
PkrI GCNGC 3 cut(s) 197, 442, 943
PleI GAGTC 1 cut(s) 270
PpsI GAGTC 1 cut(s) 270
Psp6I CCWGG 3 cut(s) 203, 478, 742
PspEI GGTNACC 2 cut(s) 8, 162
PspGI CCWGG 3 cut(s) 203, 478, 742
PspN4I GGNNCC 2 cut(s) 326, 810
PspPI GGNCC 2 cut(s) 207, 324
PsuI RGATCY 1 cut(s) 381
PsyI GACNNNGTC 1 cut(s) 242
PvuII CAGCTG 2 cut(s) 698, 941
RsaI GTAC 2 cut(s) 713, 1013
RsaNI GTAC 2 cut(s) 712, 1012
RseI CAYNNNNRTG 2 cut(s) 620, 982
SaqAI TTAA 2 cut(s) 612, 917
SatI GCNGC 3 cut(s) 196, 441, 942
Sau3AI GATC 6 cut(s) 145, 247, 316, 381, 955, 1087
Sau96I GGNCC 2 cut(s) 207, 324
ScaI AGTACT 1 cut(s) 713
SchI GAGTC 1 cut(s) 271
ScrFI CCNGG 4 cut(s) 186, 205, 480, 744
SduI GDGCHC 1 cut(s) 979
SfaNI GCATC 3 cut(s) 44, 452, 739
SfcI CTRYAG 1 cut(s) 286
Sfr274I CTCGAG 1 cut(s) 705
SfuI TTCGAA 1 cut(s) 410
SlaI CTCGAG 1 cut(s) 705
SmiMI CAYNNNNRTG 2 cut(s) 620, 982
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
SsiI CCGC 5 cut(s) 5, 64, 135, 157, 964
SspI AATATT 1 cut(s) 1029
StyD4I CCNGG 4 cut(s) 184, 203, 478, 742
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 4 cut(s) 85, 273, 726, 1016
TaiI ACGT 1 cut(s) 232
TaqI TCGA 4 cut(s) 246, 410, 706, 946
TaqII GACCGA 1 cut(s) 245
TatI WGTACW 1 cut(s) 711
Tru1I TTAA 2 cut(s) 612, 917
Tru9I TTAA 2 cut(s) 612, 917
TseFI GTSAC 3 cut(s) 8, 151, 162
TseI GCWGC 3 cut(s) 195, 440, 941
Tsp45I GTSAC 3 cut(s) 8, 151, 162
TspDTI ATGAA 3 cut(s) 792, 1013, 1022
Tth111I GACNNNGTC 1 cut(s) 242
VneI GTGCAC 1 cut(s) 975
XapI RAATTY 5 cut(s) 412, 537, 948, 1062, 1073
XhoI CTCGAG 1 cut(s) 705
XmnI GAANNNNTTC 1 cut(s) 474
ZrmI AGTACT 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.