Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000295.1

Orthogroup ID

OG0008974

Physical Location & Seq

Genomic Coordinates Reverse (-)

158864 .. 165131

Gene Structure 6268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000295.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggcgggtcaccactcttcctcctcctcctctgcatcatcttcctttcagacctttgcttcccgccttctcttgctcctcaccgtcctccctctcattctcgccgtctttgctttcgttctccaatggcgtggtggtctcaacgatcccgtcacccgctggtcacctaaccaccacgagttccccggcatgggcagcctccccaggcccgtagtccacgcttcttcacgttcttccgactgcgtcgatcctctcggtcagagccgctcaccgtcgttcccatactatagggactggaagtttgattacgcttccgatctgaggccccaggaagctggcatggattggattatccatcttgatactgatgagctaatatatccagctggcactcgagagtactctttgagacagttgttatccgatgtgcctggagatgctgatatggttatctttccaaattatgaaagtagtgtagagcgagacgatatcaaggaaccttttagtgaggtttcaatgttcaagaaaaactatgaccatcttccaaaagatgtatattttggcaattatagagaagcaacaaggggtaatccaaactattatttaacatatggaaatggaaaatcagctgctcgaattcaagatcacctccgccctaatggtgcacacagatggcacaattatatgaagacaccaaatgagattaaattggaggaggctgctattctgcattatacatatcccaaattttcagatttgacctctagacgtgatcggtgtggttgcaaacctacgaaggaggatgttaaaagatgctttatgttggaatttgacagagttatcatcatacaaggtttgagggaatctggtgttttcagctccgtaattgcatcagctgtaaaagtaactctctcaaaagatcagttcttgttgtctgttgagagtagcaactcctctagggaaaccacatatggagcaattacttcgaggaagattggtaaaacatttgattcccaagcaactgcaagaaaattcctggaattcagagccaatacttcgcaccctttggcagttgcaccattatctccgcctggcttggatgattttttcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0009505 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92

Protein Analysis

371

Amino Acids

41.97

Weight (kDa)

7.2

Isoelectric Point (pI)

51.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41451 AT3G57200 AT3G57200
fragaria_vesca	FvH4_6g24880 FvH4_6g24880 FvH4_6g24880 FvH4_6g24880
malus_domestica	MD12G1085800.v1.1 MD14G1080900.v1.1
prunus_persica	Prupe.7G049900_v2.0.a1 Prupe.7G049900_v2.0.a1
pyrus_communis	pycom12g07330 pycom14g07020
rosa_chinensis	RchiOBHm_Chr3g0484541
rosa_laevigata	RLG00000023223
rosa_multiflora	Rmu_sc0000295.1_g000030
rosa_roxburghii	Rroxscaffold_6G00397660
rosa_rugosa	Rorug03G0211600
rosa_samantha	Rh3AG262100 Rh3BG297400 Rh3CG294500 Rh3DG290800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	267
AciI	CCGC	6 cut(s)	5, 64, 157, 265, 652, 1088
AclWI	GGATC	2 cut(s)	140, 242
AcsI	RAATTY	5 cut(s)	636, 746, 827, 1031, 1040
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	3 cut(s)	190, 191, 321
AgsI	TTSAA	3 cut(s)	516, 523, 641
AjiI	CACGTC	1 cut(s)	770
AjnI	CCWGG	5 cut(s)	203, 327, 430, 1035, 1090
AluBI	AGCT	6 cut(s)	335, 373, 386, 629, 879, 896
AluI	AGCT	6 cut(s)	335, 373, 386, 629, 879, 896
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	3 cut(s)	143, 403, 477
Alw44I	GTGCAC	1 cut(s)	663
AlwI	GGATC	2 cut(s)	140, 242
Ama87I	CYCGRG	1 cut(s)	393
AoxI	GGCC	2 cut(s)	206, 323
ApaLI	GTGCAC	1 cut(s)	663
ApeKI	GCWGC	3 cut(s)	195, 629, 719
ApoI	RAATTY	5 cut(s)	636, 746, 827, 1031, 1040
ArsI	GACNNNNNNTTYG	2 cut(s)	284, 316
AspS9I	GGNCC	2 cut(s)	207, 324
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	5 cut(s)	73, 145, 156, 261, 638
AvaI	CYCGRG	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	667
BarI	GAAGNNNNNNTAC	2 cut(s)	290, 322
BauI	CACGAG	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	695
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	207, 616, 706
BccI	CCATC	3 cut(s)	363, 546, 666
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	966, 1000
BciT130I	CCWGG	5 cut(s)	205, 329, 432, 1037, 1092
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	3 cut(s)	143, 403, 477
BfaI	CTAG	2 cut(s)	765, 957
BfmI	CTRYAG	1 cut(s)	286
BisI	GCNGC	4 cut(s)	196, 265, 630, 720
BlsI	GCNGC	4 cut(s)	197, 266, 631, 721
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	6 cut(s)	186, 205, 329, 432, 1037, 1092
BmeT110I	CYCGRG	1 cut(s)	393
BmgBI	CACGTC	1 cut(s)	770
BmgT120I	GGNCC	2 cut(s)	207, 324
BmiI	GGNNCC	2 cut(s)	326, 498
BmrFI	CCNGG	6 cut(s)	186, 205, 329, 432, 1037, 1092
BmsI	GCATC	4 cut(s)	44, 427, 803, 899
BpiI	GAAGAC	1 cut(s)	695
BpmI	CTGGAG	1 cut(s)	453
BpuMI	CCSGG	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	184, 203, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 191, 321
Bse1I	ACTGG	1 cut(s)	299
BseBI	CCWGG	5 cut(s)	205, 329, 432, 1037, 1092
BseDI	CCNNGG	3 cut(s)	184, 203, 327
BseGI	GGATG	2 cut(s)	808, 1105
BseLI	CCNNNNNNNGG	3 cut(s)	190, 191, 321
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	299
BseRI	GAGGAG	6 cut(s)	13, 16, 19, 68, 728, 943
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	207, 616, 706
BshFI	GGCC	2 cut(s)	208, 325
BsiHKAI	GWGCWC	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	186
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	190, 191, 321
BsmAI	GTCTC	3 cut(s)	143, 403, 477
BsmBI	CGTCTC	1 cut(s)	477
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	2 cut(s)	208, 325
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	6 cut(s)	145, 247, 316, 643, 772, 919
BspACI	CCGC	6 cut(s)	5, 64, 157, 265, 652, 1088
BspANI	GGCC	2 cut(s)	208, 325
BspCNI	CTCAG	1 cut(s)	312
BspLI	GGNNCC	2 cut(s)	326, 498
BspPI	GGATC	2 cut(s)	140, 242
BspTNI	GGTCTC	1 cut(s)	143
BsrBI	CCGCTC	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	299
BssECI	CCNNGG	3 cut(s)	184, 203, 327
BssMI	GATC	6 cut(s)	145, 247, 316, 643, 772, 919
BssSI	CACGAG	1 cut(s)	176
Bst2BI	CACGAG	1 cut(s)	176
Bst2UI	CCWGG	5 cut(s)	205, 329, 432, 1037, 1092
Bst4CI	ACNGT	3 cut(s)	85, 273, 414
Bst6I	CTCTTC	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	337, 388
BstDEI	CTNAG	1 cut(s)	320
BstEII	GGTNACC	2 cut(s)	8, 162
BstF5I	GGATG	2 cut(s)	808, 1105
BstKTI	GATC	6 cut(s)	148, 250, 319, 646, 775, 922
BstMAI	GTCTC	3 cut(s)	143, 403, 477
BstMBI	GATC	6 cut(s)	145, 247, 316, 643, 772, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 195
BstNI	CCWGG	5 cut(s)	205, 329, 432, 1037, 1092
BstPI	GGTNACC	2 cut(s)	8, 162
BstSCI	CCNGG	6 cut(s)	184, 203, 327, 430, 1035, 1090
BstSFI	CTRYAG	1 cut(s)	286
BstSLI	GKGCMC	1 cut(s)	667
BstV1I	GCAGC	3 cut(s)	207, 616, 706
BstV2I	GAAGAC	1 cut(s)	695
BstXI	CCANNNNNNTGG	2 cut(s)	131, 335
BsuRI	GGCC	2 cut(s)	208, 325
BtrI	CACGTC	1 cut(s)	770
BtsCI	GGATG	2 cut(s)	808, 1105
Cac8I	GCNNGC	2 cut(s)	337, 388
Cfr13I	GGNCC	2 cut(s)	207, 324
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	2 cut(s)	190, 340
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	6 cut(s)	147, 249, 318, 645, 774, 921
DpnII	GATC	6 cut(s)	145, 247, 316, 643, 772, 919
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
EciI	GGCGGA	2 cut(s)	641, 1077
Eco31I	GGTCTC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	490
Eco88I	CYCGRG	1 cut(s)	393
Eco91I	GGTNACC	2 cut(s)	8, 162
EcoO109I	RGGNCCY	1 cut(s)	324
EcoO65I	GGTNACC	2 cut(s)	8, 162
EcoRI	GAATTC	2 cut(s)	636, 1040
EcoRII	CCWGG	5 cut(s)	203, 327, 430, 1035, 1090
EcoRV	GATATC	1 cut(s)	490
Esp3I	CGTCTC	1 cut(s)	477
FaeI	CATG	2 cut(s)	193, 343
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	189, 339
FauI	CCCGC	2 cut(s)	71, 164
FauNDI	CATATG	2 cut(s)	610, 970
Fnu4HI	GCNGC	4 cut(s)	196, 265, 630, 720
FokI	GGATG	2 cut(s)	815, 1112
Fsp4HI	GCNGC	4 cut(s)	196, 265, 630, 720
FspBI	CTAG	2 cut(s)	765, 957
GluI	GCNGC	4 cut(s)	196, 265, 630, 720
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	208, 325
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	193, 343
HinfI	GANTC	2 cut(s)	863, 1010
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	5 cut(s)	73, 145, 156, 261, 638
Hpy166II	GTNNAC	2 cut(s)	217, 665
Hpy188I	TCNGA	8 cut(s)	51, 238, 261, 316, 321, 424, 754, 1046
Hpy188III	TCNNGA	5 cut(s)	359, 395, 523, 641, 765
Hpy8I	GTNNAC	2 cut(s)	217, 665
Hpy99I	CGWCG	2 cut(s)	248, 277
HpyAV	CCTTC	2 cut(s)	77, 790
HpyCH4III	ACNGT	3 cut(s)	85, 273, 414
HpyCH4IV	ACGT	2 cut(s)	229, 769
HpyCH4V	TGCA	7 cut(s)	35, 665, 730, 786, 890, 1025, 1076
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 195
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	229, 769
Hsp92II	CATG	2 cut(s)	193, 343
Kzo9I	GATC	6 cut(s)	145, 247, 316, 643, 772, 919
LmnI	GCTCC	3 cut(s)	81, 884, 974
Lsp1109I	GCAGC	3 cut(s)	207, 616, 706
LweI	GCATC	4 cut(s)	44, 427, 803, 899
MaeI	CTAG	2 cut(s)	765, 957
MaeII	ACGT	2 cut(s)	229, 769
MaeIII	GTNAC	4 cut(s)	8, 151, 162, 904
MalI	GATC	6 cut(s)	147, 249, 318, 645, 774, 921
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	6 cut(s)	145, 247, 316, 643, 772, 919
MboII	GAAGA	7 cut(s)	9, 33, 216, 225, 533, 700, 1003
MhlI	GDGCHC	1 cut(s)	667
MmeI	TCCRAC	2 cut(s)	261, 804
MseI	TTAA	3 cut(s)	605, 705, 807
MslI	CAYNNNNRTG	1 cut(s)	670
MspA1I	CMGCKG	4 cut(s)	159, 386, 629, 896
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	6 cut(s)	186, 205, 329, 432, 1037, 1092
MvaI	CCWGG	5 cut(s)	205, 329, 432, 1037, 1092
MwoI	GCNNNNNNNGC	2 cut(s)	110, 195
NciI	CCSGG	1 cut(s)	186
NdeI	CATATG	2 cut(s)	610, 970
NdeII	GATC	6 cut(s)	145, 247, 316, 643, 772, 919
NlaIII	CATG	2 cut(s)	193, 343
NlaIV	GGNNCC	2 cut(s)	326, 498
NmuCI	GTSAC	3 cut(s)	8, 151, 162
PaeR7I	CTCGAG	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	863, 1010
PflFI	GACNNNGTC	1 cut(s)	242
PfoI	TCCNGGA	1 cut(s)	1035
PkrI	GCNGC	4 cut(s)	197, 266, 631, 721
Psp6I	CCWGG	5 cut(s)	203, 327, 430, 1035, 1090
PspEI	GGTNACC	2 cut(s)	8, 162
PspGI	CCWGG	5 cut(s)	203, 327, 430, 1035, 1090
PspN4I	GGNNCC	2 cut(s)	326, 498
PspPI	GGNCC	2 cut(s)	207, 324
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	3 cut(s)	386, 629, 896
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	670
SaqAI	TTAA	3 cut(s)	605, 705, 807
SatI	GCNGC	4 cut(s)	196, 265, 630, 720
Sau3AI	GATC	6 cut(s)	145, 247, 316, 643, 772, 919
Sau96I	GGNCC	2 cut(s)	207, 324
ScaI	AGTACT	1 cut(s)	401
ScrFI	CCNGG	6 cut(s)	186, 205, 329, 432, 1037, 1092
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	4 cut(s)	44, 427, 803, 899
SfcI	CTRYAG	1 cut(s)	286
Sfr274I	CTCGAG	1 cut(s)	393
SlaI	CTCGAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
SsiI	CCGC	6 cut(s)	5, 64, 157, 265, 652, 1088
SspMI	CTAG	2 cut(s)	765, 957
StyD4I	CCNGG	6 cut(s)	184, 203, 327, 430, 1035, 1090
TaaI	ACNGT	3 cut(s)	85, 273, 414
TaiI	ACGT	2 cut(s)	232, 772
TaqI	TCGA	4 cut(s)	246, 394, 634, 986
TaqII	GACCGA	1 cut(s)	245
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	267
TfiI	GAWTC	2 cut(s)	863, 1010
Tru1I	TTAA	3 cut(s)	605, 705, 807
Tru9I	TTAA	3 cut(s)	605, 705, 807
TseFI	GTSAC	3 cut(s)	8, 151, 162
TseI	GCWGC	3 cut(s)	195, 629, 719
Tsp45I	GTSAC	3 cut(s)	8, 151, 162
TspDTI	ATGAA	3 cut(s)	480, 701, 1099
TspGWI	ACGGA	1 cut(s)	871
Tth111I	GACNNNGTC	1 cut(s)	242
VneI	GTGCAC	1 cut(s)	663
XapI	RAATTY	5 cut(s)	636, 746, 827, 1031, 1040
XbaI	TCTAGA	1 cut(s)	764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	393
XspI	CTAG	2 cut(s)	765, 957
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.