Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011450

Physical Location & Seq

Genomic Coordinates Reverse (-)

26320728 .. 26333684

Gene Structure 12957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023638

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4182 bp

ATGGCGGTCTCCGAGGAGGAGTGTTCCTCCGCCAACTCCAGATCATCCTCGTCCTCCACCTCCAGCACCTCTCACTACCTCTCCAAGTGCCTCCTCCGTGGCACCGTCGTTCTCCACGTCCTCCACGGTCACATCCGCTTCCCCAACTCCCGCGACATCGTTTTCGGCAAGGAGAAATCGATAGAGTTGGTGATAATCGGTGAAGACGGGATTGTACAGTCTGTGTGTGAGCAGCCTGTGTTTGGCACCATTAAAGACATTGCCGTCCTACCTTGGAATGACGGATTCCGAACCCGAAACCGCCAGATGCCGGGCAAGGATCTTTTGGTAGTTGTTTCGGATTCCGGGAAGCTCTCGGTTCTATCTTTCTGCAATGAAATGCACAGGTTTTTACCTGTGACACAAGTTCAACTTTCTAATCCTGGAAACTCGAGGAATCAGCTTGCAAGAATGCTAGCCATTGATTCAAGTGGCTGCTTCATTGCTGCTAGTGCATATGTAGACCGGTTGGCTATGTTCTCTGTTTCAATGTCTGGAGGCAGTGACATTATTGATAAGAAAATAGTGTATCCCCCTGAAAACGAAGTTGATGTGAATCCTGCTAGAGTCCAGAAAAACAGTATATCAGGTACTATATGGAGCATGAGCTTTATTTCACAGGATCCTACTAATCAAAGTAAGGGACATAATCCTATACTCGCCGTTGTTATAAATAGGAGTGGGGCAGTCCGTAATGAATTGCTGTTACTGGGATGGAACATTAGAGAACAAGATGTTTATGTTATTTCTCAGTATGTAGAAGATGATGGACCTTTAGTACTTAGCATTGCTGAAGTTCCTCATTCGTATGGATTTGCTTTTCTGTTTAGGGAGGGTGATGCTATTTTAATGGATCTTAGAGATGCCAACAACCCTTACTGTATCTACAGAACAAGCCCAAATTTCTTATCCAATGTGGTTGATGAGGCAAATTTTGTTCAGGAGTCGTCTAAAGGATGTGATCTGTCTAGAGTACTACAGGTTGATGACGAAGGGGGTTTATTTAATGTAGCTGCCTGTGCGTTACTGGAACTGAGTGATTTAGATCCTATGTGTATAGATGGTGACAAATACAATGTGAATGTGACTCACAAATTTGTGTGTTCATGGAGTTGGGAACCAGGGAATGTTAAAAACCAAAGAATGATCATTTCTGCTGATACCGGAGAATATTTCATGATTGAAATTTTTTTCAATCCTGATGGCGTTAAGGTTCAAGAATCTGAGTGTCTTTACAAAGGTTTACCATGCAAGGCAATTTTGTGGGTTGAAGGCGGGTTTCTGGCTGCACTAGTAGATATGGGGGATGGGATGGTCTTGAAAATGGAAAACGGAACACTTCATTACAGAAGTCCTATTCAAACCATTGTCCCAGTCTTGGATATGTCAGTTGTGGATTACCATGATGAGAAACACGATCAAATGTTTGCTTGTTGTGGAGTGGCACCGGAGGGGTCACTAAGGATCATTAGAAGTGGTATCACTGTAGAAAAGCTACTAAGGACTGCACCTATATATCAAGGGATTACTGGCACTTGGACATTACGAATGAAGATGATTGATACTTACCATTCATTTCTTGTGCTGTCATTCGTTGAGGAAACCAGGGTACTCTCAGTTGGTTTAAGCTTTACTGATGTGACTGATTCAGTTGGTTTCCAGCCTGATGTTTCTACTTTGGCATGTGGTGTTGTAAATGATGGAATGCTGGTCCAGATTCACAAAAGTGCAGTCAGGCTCTGTCTGCCCACCCAAGGTGCGCATTCTGATGGTTTTCCATTGCCTTCTCCAGTTTGTACCTCTTGGTTCCCAGAAAATTTGAGTATCAGTTTGGGTGCTGTTGGGCATAATCTAATTGTTGTTTCTTCATCTAATCCCTGCTTTATATTCATACTTGGGGTCAGAATGCTTTCAGTGCATCATTATGAGATATATGAGATGCAACATTTGAGATTGCAAAATGAATTATCATGCATCTCCATTCCTCAGAACCGTTACGAGAAAAAAGATACAAGTTTTTCAAACAGTCTGGTAGATGAGAGTTCTGCCCCTGCTCTTCCATTTGGAGTTGACATCAGTAATATCTTTGTTATTGGAACACACAAGCCTTCGGTGGAAATCTTGTCTCTTGCACCTAGTGAAGGCCTACGAGTTCTTGCTTCTGGGGCAATTTCATTAACAAATACTTTAGGAACTGCTATTAGTGGCTGCATTCCTCAAGATGTAAGGCTTGTATTAGTTGACCGATTGTATGTCCTTTCTGGATTGAGGAATGGAATGCTGCTTCGGTTTGAATGGCCTACTCCCTCTCCAATGCCTTTATCTGTAGTACCTCAGAGTCCTGTTGATTGGCTTTCAGTTAGTACAGATACTGTTTTATCCAGTGTATCAACAGCAAATTCTTTTGGTCGACATATGTATACTACTAAGTTATCTGAGAATATAAAGGACAACTTGCCTGTTGATTTGCAATTGATTGCTACCCGTCGGATTGGCATCACTCCTGTATTCCTGGTTCCTTTAAGTGATTCCCTTGATGGTGATGTAGTTGTTCTCAGTGATAGGCCTTGGTTGCTGCATACTGCAAGGCACAGCCTCTCATATACTTCTATCTCATTTCAATCTTCGACGCATGTGACTCCTGTATGTTATGTCGAATGCCCCAAGGGAATTTTATTTGTTGCAGAGAACTGTCTACATTTGGTAGAGATGGTGCACAGTAAGAGGCTTAATGTGCAGAAGTTGCATCTTGGAGGCACTCCGAGGAGGGTCTTTTATCATAGTGAAAGCAGGCTATTGCTTGTGATGAGGACTAATTTGAGTGATGATACATGTTCATCTGATATATGTTGCGTAGATCCTCTTAGTGGGTTGGTGCTGTCATCTTTCAAACTTGAATATGGTGAAACTGGAAAATCGATGGAGTTAATGAGGGTTGGAAGCGAACAGGTTATTTTGGTTGGAACAAGTTTGTCTTCTGGTTCGGCCATAATGCCCTGTGGTGAGGCTGAAAGTACCAAGGGACGTCTTATTGTTCTCTGTCTTGAAAATGTGCAAAATTCAGACAGTGGTTCAATGACATTCGGCTCAAAGGCAGGGTCATCTTCTCAACGAGCTTCCCCATTTCATGAAATTGTTGGGTATGCCACAGAACAGCTTTCAAGTAGTAGTCTCTGTAGTAGCCCAGATGATACTAGCTGTGATGGTATGAAACTTGAAGAAACTGAAGCGTGGCAGTTTCGATTAGCTTTTTCAATGCCATGGCCCGGAATGGTACTTGCAATCTGCCCTTATCTTGACCGTTACTTCTTGGCTTCTGCTGGTAATGCTTTTTATTTATGTGGTTTTCCACATGACAATTCCCAAAGAGTAAAAAAGTGGGCTGTGGCGAGGACGCGCTTTACAATTACATCTTTGACTGCATATTTCACTAGAATTGTTGTTGGTGATTGTCGTGATGGCATCCTTTTCTATGATTATCATGAGGAGTCCAAAAAGCTGCAGCAACTTTACTGTGATCCATATCAGAGATTAGTTGGTGATTGCATTCTTATGGATGTCAACACTGCTGTTGTTTCAGATCGTAAGGGAAGCATTGCTGTCCTTTCATGTGCAGATTATTTAGAAGATACTGCAAGTCCAGAATGTAATTTAACAGTGAGCTGTGCTTATTATATGGGTGAGGTAGCTATGAGCATCAAGAAGGGCTCATTTTCATATAAACTTCCAGCTGATGATGCATTGAAAGGCGGTGATGGAAGTATTGACTTCTCTCAAAACAGTATCATTGTGAGTACACTGCTTGGAAGCATAATAACTTTCGTTCCAATATCAAGGGAAGAATATGAACTCTTAGAAGCTGTCCAAGATAGACTGGCGGTACATCCATTAACCGCTCCTATTCTCGGAAATGATCATAATGAGTTTCATAGCCGTGAAAATCCGGTTGGAGTACCCAAGATTCTTGATGCTGACATGCTCACTCAATTCTTGGAGCTTACAAGTATGCAACAAGAGGCTGTATTATCATTACCTCTTTGCGTACAAGGCACAGTAAAGTCGCGTTTGAAATTGCGAAGTTCACCTGTTCCTGTCAATCAGGTTGTGCAACTCCTTGAGCGAGTTCACTATGCCCTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1394

Amino Acids

153.17

Weight (kDa)

5.3

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	37 - 468	4e-43	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	520 - 916	2.7e-30	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	960 - 1344	5.1e-30	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11960 AT3G11960 AT3G11960 AT3G11960
fragaria_vesca	FvH4_6g21460 FvH4_6g21460 FvH4_6g21460
malus_domestica	MD14G1049600.v1.1
prunus_persica	Prupe.7G085900_v2.0.a1
pyrus_communis	pycom14g04060
rosa_chinensis	RchiOBHm_Chr3g0478641
rosa_laevigata	RLG00000023638
rosa_multiflora	Rmu_sc0005420.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403250
rosa_rugosa	Rorug03G0166800
rosa_samantha	Rh3AG218800 Rh3BG250400 Rh3CG247300 Rh3DG243600
rosa_wichuraiana	Rw3G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	3067
Acc16I	TGCGCA	1 cut(s)	1800
AccB1I	GGYRCC	3 cut(s)	101, 245, 1483
AccBSI	CCGCTC	1 cut(s)	3935
AccI	GTMKAC	4 cut(s)	501, 2449, 2459, 2734
AccII	CGCG	3 cut(s)	153, 3436, 4102
AciI	CCGC	9 cut(s)	5, 30, 136, 151, 301, 1314, 3789, 3917, 3933
AclWI	GGATC	8 cut(s)	327, 656, 669, 900, 1079, 1511, 2891, 3551
AcoI	YGGCCR	1 cut(s)	3024
AcsI	RAATTY	8 cut(s)	940, 970, 1133, 1224, 1855, 2437, 2709, 3097
AcuI	CTGAAG	2 cut(s)	852, 3285
AcyI	GRCGYC	1 cut(s)	3064
AdeI	CACNNNGTG	1 cut(s)	2177
AfiI	CCNNNNNNNGG	8 cut(s)	242, 310, 1417, 1793, 2180, 2906, 3305, 3944
AflIII	ACRYGT	1 cut(s)	2870
AgeI	ACCGGT	1 cut(s)	504
AhlI	ACTAGT	1 cut(s)	1330
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	4 cut(s)	421, 1159, 1643, 2550
AjuI	GAANNNNNNNTTGG	2 cut(s)	3969, 4001
AleI	CACNNNNGTG	1 cut(s)	1764
Alw21I	GWGCWC	1 cut(s)	2757
Alw26I	GTCTC	3 cut(s)	13, 2169, 3215
Alw44I	GTGCAC	1 cut(s)	2753
AlwI	GGATC	8 cut(s)	327, 656, 669, 900, 1079, 1511, 2891, 3551
AlwNI	CAGNNNCTG	2 cut(s)	1779, 2411
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	5 cut(s)	2182, 2336, 2603, 3024, 3302
ApaLI	GTGCAC	1 cut(s)	2753
ApoI	RAATTY	8 cut(s)	940, 970, 1133, 1224, 1855, 2437, 2709, 3097
ArsI	GACNNNNNNTTYG	6 cut(s)	146, 178, 1755, 1787, 3122, 3154
AsiGI	ACCGGT	1 cut(s)	504
Asp700I	GAANNNNTTC	1 cut(s)	1948
AspLEI	GCGC	2 cut(s)	1801, 3438
AspS9I	GGNCC	3 cut(s)	809, 1750, 3303
AsuC2I	CCSGG	3 cut(s)	312, 346, 3306
AsuNHI	GCTAGC	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	2 cut(s)	809, 1750
BaeGI	GKGCMC	1 cut(s)	2757
BamHI	GGATCC	1 cut(s)	661
BanI	GGYRCC	3 cut(s)	101, 245, 1483
BanII	GRGCYC	1 cut(s)	3749
BbsI	GAAGAC	2 cut(s)	210, 3006
Bbv12I	GWGCWC	1 cut(s)	2757
BceAI	ACGGC	3 cut(s)	248, 686, 3957
BciT130I	CCWGG	4 cut(s)	423, 1161, 1645, 2552
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	2 cut(s)	1185, 3952
BcnI	CCSGG	3 cut(s)	312, 346, 3306
BcoDI	GTCTC	3 cut(s)	13, 2169, 3215
BcuI	ACTAGT	1 cut(s)	1330
BfaI	CTAG	8 cut(s)	455, 489, 603, 1008, 1331, 2175, 3234, 3471
BfmI	CTRYAG	6 cut(s)	925, 1016, 1524, 2364, 3214, 3539
BfuI	GTATCC	1 cut(s)	579
BmcAI	AGTACT	2 cut(s)	819, 1014
Bme1390I	CCNGG	7 cut(s)	312, 346, 423, 1161, 1645, 2552, 3306
Bme18I	GGWCC	2 cut(s)	809, 1750
BmeT110I	CYCGRG	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	809, 1750, 3303
BmiI	GGNNCC	7 cut(s)	103, 247, 663, 1158, 1485, 1847, 2556
BmrFI	CCNGG	7 cut(s)	312, 346, 423, 1161, 1645, 2552, 3306
BmrI	ACTGGG	2 cut(s)	758, 1406
BmtI	GCTAGC	1 cut(s)	458
BmuI	ACTGGG	2 cut(s)	758, 1406
BpiI	GAAGAC	2 cut(s)	210, 3006
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	4 cut(s)	22, 46, 555, 1812
BpuEI	CTTGAG	2 cut(s)	2241, 4175
BpuMI	CCSGG	3 cut(s)	312, 346, 3306
Bsa29I	ATCGAT	2 cut(s)	179, 2957
BsaBI	GATNNNNATC	4 cut(s)	594, 1083, 2534, 3561
BsaHI	GRCGYC	1 cut(s)	3064
BsaI	GGTCTC	1 cut(s)	13
BsaWI	WCCGGW	4 cut(s)	504, 1202, 1486, 3982
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 2332, 2362
Bsc4I	CCNNNNNNNGG	8 cut(s)	242, 310, 1417, 1793, 2180, 2906, 3305, 3944
Bse118I	RCCGGY	1 cut(s)	504
Bse1I	ACTGG	8 cut(s)	753, 1071, 1412, 1573, 1829, 2421, 2953, 3918
Bse3DI	GCAATG	6 cut(s)	258, 379, 480, 825, 1817, 3633
Bse8I	GATNNNNATC	4 cut(s)	594, 1083, 2534, 3561
BseBI	CCWGG	4 cut(s)	423, 1161, 1645, 2552
BseCI	ATCGAT	2 cut(s)	179, 2957
BseGI	GGATG	9 cut(s)	44, 132, 758, 1001, 1351, 1356, 3501, 3601, 3922
BseJI	GATNNNNATC	4 cut(s)	594, 1083, 2534, 3561
BseLI	CCNNNNNNNGG	8 cut(s)	242, 310, 1417, 1793, 2180, 2906, 3305, 3944
BseMI	GCAATG	6 cut(s)	258, 379, 480, 825, 1817, 3633
BseMII	CTCAG	8 cut(s)	803, 1064, 1254, 1668, 2039, 2387, 2466, 2608
BseNI	ACTGG	8 cut(s)	753, 1071, 1412, 1573, 1829, 2421, 2953, 3918
BseRI	GAGGAG	5 cut(s)	29, 32, 83, 2818, 3539
BseSI	GKGCMC	1 cut(s)	2757
BsgI	GTGCAG	5 cut(s)	1311, 1530, 1788, 2795, 3672
Bsh1236I	CGCG	3 cut(s)	153, 3436, 4102
BshFI	GGCC	5 cut(s)	2184, 2338, 2605, 3026, 3304
BshNI	GGYRCC	3 cut(s)	101, 245, 1483
BshTI	ACCGGT	1 cut(s)	504
BshVI	ATCGAT	2 cut(s)	179, 2957
BsiHKAI	GWGCWC	1 cut(s)	2757
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	7 cut(s)	311, 345, 505, 1203, 1487, 3306, 3983
BslFI	GGGAC	3 cut(s)	696, 1394, 3075
BslI	CCNNNNNNNGG	8 cut(s)	242, 310, 1417, 1793, 2180, 2906, 3305, 3944
BsmAI	GTCTC	3 cut(s)	13, 2169, 3215
BsmFI	GGGAC	3 cut(s)	696, 1394, 3075
BsmI	GAATGC	8 cut(s)	456, 1749, 1801, 1950, 2250, 2322, 2702, 3585
BsnI	GGCC	5 cut(s)	2184, 2338, 2605, 3026, 3304
Bso31I	GGTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	2 cut(s)	2757, 3749
Bsp1407I	TGTACA	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	3299
BspACI	CCGC	9 cut(s)	5, 30, 136, 151, 301, 1314, 3789, 3917, 3933
BspANI	GGCC	5 cut(s)	2184, 2338, 2605, 3026, 3304
BspCNI	CTCAG	8 cut(s)	802, 1065, 1255, 1667, 2038, 2386, 2467, 2607
BspDI	ATCGAT	2 cut(s)	179, 2957
BspFNI	CGCG	3 cut(s)	153, 3436, 4102
BspHI	TCATGA	3 cut(s)	1215, 3166, 3520
BspLI	GGNNCC	7 cut(s)	103, 247, 663, 1158, 1485, 1847, 2556
BspMAI	CTGCAG	1 cut(s)	3543
BspOI	GCTAGC	1 cut(s)	458
BspPI	GGATC	8 cut(s)	327, 656, 669, 900, 1079, 1511, 2891, 3551
BspQI	GCTCTTC	1 cut(s)	2100
BspT107I	GGYRCC	3 cut(s)	101, 245, 1483
BspTNI	GGTCTC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	3935
BsrDI	GCAATG	6 cut(s)	258, 379, 480, 825, 1817, 3633
BsrFI	RCCGGY	1 cut(s)	504
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	8 cut(s)	753, 1071, 1412, 1573, 1829, 2421, 2953, 3918
BssAI	RCCGGY	1 cut(s)	504
BssNAI	GTATAC	1 cut(s)	2460
BssNI	GRCGYC	1 cut(s)	3064
BssT1I	CCWWGG	6 cut(s)	272, 1792, 2606, 2703, 3057, 3299
Bst1107I	GTATAC	1 cut(s)	2460
Bst2UI	CCWGG	4 cut(s)	423, 1161, 1645, 2552
Bst6I	CTCTTC	1 cut(s)	2100
BstACI	GRCGYC	1 cut(s)	3064
BstAPI	GCANNNNNTGC	1 cut(s)	2782
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	444, 456, 2831
BstDSI	CCRYGG	3 cut(s)	97, 124, 3299
BstENI	CCTNNNNNAGG	1 cut(s)	2178
BstF5I	GGATG	9 cut(s)	44, 132, 758, 1001, 1351, 1356, 3501, 3601, 3922
BstFNI	CGCG	3 cut(s)	153, 3436, 4102
BstHHI	GCGC	2 cut(s)	1801, 3438
BstMAI	GTCTC	3 cut(s)	13, 2169, 3215
BstNI	CCWGG	4 cut(s)	423, 1161, 1645, 2552
BstNSI	RCATGY	4 cut(s)	1725, 2675, 2874, 4018
BstSCI	CCNGG	7 cut(s)	310, 344, 421, 1159, 1643, 2550, 3304
BstSFI	CTRYAG	6 cut(s)	925, 1016, 1524, 2364, 3214, 3539
BstSLI	GKGCMC	1 cut(s)	2757
BstUI	CGCG	3 cut(s)	153, 3436, 4102
BstV2I	GAAGAC	2 cut(s)	210, 3006
BstX2I	RGATCY	5 cut(s)	319, 661, 892, 1084, 2896
BstYI	RGATCY	5 cut(s)	319, 661, 892, 1084, 2896
BstZ17I	GTATAC	1 cut(s)	2460
Bsu15I	ATCGAT	2 cut(s)	179, 2957
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	5 cut(s)	2184, 2338, 2605, 3026, 3304
BsuTUI	ATCGAT	2 cut(s)	179, 2957
BtgI	CCRYGG	3 cut(s)	97, 124, 3299
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	9 cut(s)	44, 132, 758, 1001, 1351, 1356, 3501, 3601, 3922
BtsI	GCAGTG	3 cut(s)	547, 3603, 3836
BtsIMutI	CAGTG	9 cut(s)	547, 1521, 1959, 2428, 2602, 3112, 3603, 3702, 3836
Cac8I	GCNNGC	3 cut(s)	444, 456, 2831
CaiI	CAGNNNCTG	2 cut(s)	1779, 2411
CciI	TCATGA	3 cut(s)	1215, 3166, 3520
CfoI	GCGC	2 cut(s)	1801, 3438
Cfr10I	RCCGGY	1 cut(s)	504
Cfr13I	GGNCC	3 cut(s)	809, 1750, 3303
ClaI	ATCGAT	2 cut(s)	179, 2957
CseI	GACGC	2 cut(s)	2677, 3442
CspAI	ACCGGT	1 cut(s)	504
DraIII	CACNNNGTG	1 cut(s)	2177
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	3024
Eam1104I	CTCTTC	1 cut(s)	2100
EarI	CTCTTC	1 cut(s)	2100
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	6 cut(s)	272, 1792, 2606, 2703, 3057, 3299
Eco147I	AGGCCT	2 cut(s)	2184, 2605
Eco24I	GRGCYC	1 cut(s)	3749
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	809, 1750
Eco57I	CTGAAG	2 cut(s)	852, 3285
Eco88I	CYCGRG	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	2178
EcoRII	CCWGG	4 cut(s)	421, 1159, 1643, 2550
EcoT14I	CCWWGG	6 cut(s)	272, 1792, 2606, 2703, 3057, 3299
EcoT22I	ATGCAT	2 cut(s)	2015, 3781
EcoT38I	GRGCYC	1 cut(s)	3749
ErhI	CCWWGG	6 cut(s)	272, 1792, 2606, 2703, 3057, 3299
FalI	AAGNNNNNCTT	6 cut(s)	396, 428, 2477, 2509, 2998, 3030
FaqI	GGGAC	3 cut(s)	696, 1394, 3075
FauI	CCCGC	2 cut(s)	158, 1307
FauNDI	CATATG	2 cut(s)	496, 2454
FbaI	TGATCA	2 cut(s)	1185, 3952
FblI	GTMKAC	4 cut(s)	501, 2449, 2459, 2734
FokI	GGATG	9 cut(s)	31, 119, 765, 1008, 1358, 1363, 3488, 3608, 3909
FriOI	GRGCYC	1 cut(s)	3749
FspAI	RTGCGCAY	1 cut(s)	1800
FspBI	CTAG	8 cut(s)	455, 489, 603, 1008, 1331, 2175, 3234, 3471
FspI	TGCGCA	1 cut(s)	1800
GlaI	GCGC	2 cut(s)	1800, 3437
GsuI	CTGGAG	4 cut(s)	22, 46, 555, 1812
HaeIII	GGCC	5 cut(s)	2184, 2338, 2605, 3026, 3304
HapII	CCGG	7 cut(s)	311, 345, 505, 1203, 1487, 3306, 3983
HgaI	GACGC	2 cut(s)	2677, 3442
HhaI	GCGC	2 cut(s)	1801, 3438
Hin1I	GRCGYC	1 cut(s)	3064
Hin6I	GCGC	2 cut(s)	1799, 3436
HinP1I	GCGC	2 cut(s)	1799, 3436
HincII	GTYRAC	4 cut(s)	2110, 2281, 2450, 3601
HindII	GTYRAC	4 cut(s)	2110, 2281, 2450, 3601
HindIII	AAGCTT	1 cut(s)	1666
HpaII	CCGG	7 cut(s)	311, 345, 505, 1203, 1487, 3306, 3983
Hpy99I	CGWCG	3 cut(s)	110, 2529, 2671
HpyAV	CCTTC	6 cut(s)	1025, 1304, 1833, 2157, 2174, 3736
HpyCH4IV	ACGT	2 cut(s)	117, 3064
HpySE526I	ACGT	2 cut(s)	117, 3064
Hsp92I	GRCGYC	1 cut(s)	3064
HspAI	GCGC	2 cut(s)	1799, 3436
Ksp22I	TGATCA	2 cut(s)	1185, 3952
LguI	GCTCTTC	1 cut(s)	2100
LmnI	GCTCC	3 cut(s)	639, 3940, 4033
MaeI	CTAG	8 cut(s)	455, 489, 603, 1008, 1331, 2175, 3234, 3471
MaeII	ACGT	2 cut(s)	117, 3064
MbiI	CCGCTC	1 cut(s)	3935
MfeI	CAATTG	1 cut(s)	2510
MflI	RGATCY	5 cut(s)	319, 661, 892, 1084, 2896
MhlI	GDGCHC	2 cut(s)	2757, 3749
MlyI	GAGTC	6 cut(s)	615, 992, 1120, 2386, 2671, 3536
MmeI	TCCRAC	4 cut(s)	2507, 2956, 2980, 3967
Mph1103I	ATGCAT	2 cut(s)	2015, 3781
MroXI	GAANNNNTTC	1 cut(s)	1948
MslI	CAYNNNNRTG	6 cut(s)	846, 1764, 1806, 1962, 3590, 3972
MspA1I	CMGCKG	1 cut(s)	3770
MspI	CCGG	7 cut(s)	311, 345, 505, 1203, 1487, 3306, 3983
MspR9I	CCNGG	7 cut(s)	312, 346, 423, 1161, 1645, 2552, 3306
MunI	CAATTG	1 cut(s)	2510
Mva1269I	GAATGC	8 cut(s)	456, 1749, 1801, 1950, 2250, 2322, 2702, 3585
MvaI	CCWGG	4 cut(s)	423, 1161, 1645, 2552
MvnI	CGCG	3 cut(s)	153, 3436, 4102
NciI	CCSGG	3 cut(s)	312, 346, 3306
NcoI	CCATGG	1 cut(s)	3299
NdeI	CATATG	2 cut(s)	496, 2454
NheI	GCTAGC	1 cut(s)	454
NlaIV	GGNNCC	7 cut(s)	103, 247, 663, 1158, 1485, 1847, 2556
NmuCI	GTSAC	8 cut(s)	128, 397, 542, 1103, 1123, 1494, 1678, 2674
NsbI	TGCGCA	1 cut(s)	1800
NsiI	ATGCAT	2 cut(s)	2015, 3781
NspI	RCATGY	4 cut(s)	1725, 2675, 2874, 4018
OliI	CACNNNNGTG	1 cut(s)	1764
PaeR7I	CTCGAG	1 cut(s)	430
PagI	TCATGA	3 cut(s)	1215, 3166, 3520
PceI	AGGCCT	2 cut(s)	2184, 2605
PciI	ACATGT	1 cut(s)	2870
PciSI	GCTCTTC	1 cut(s)	2100
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	8 cut(s)	456, 1749, 1801, 1950, 2250, 2322, 2702, 3585
PdmI	GAANNNNTTC	1 cut(s)	1948
PfoI	TCCNGGA	2 cut(s)	344, 421
PinAI	ACCGGT	1 cut(s)	504
PleI	GAGTC	6 cut(s)	614, 991, 1120, 2385, 2671, 3535
PpsI	GAGTC	6 cut(s)	614, 991, 1120, 2385, 2671, 3535
PscI	ACATGT	1 cut(s)	2870
PsiI	TTATAA	1 cut(s)	710
Psp6I	CCWGG	4 cut(s)	421, 1159, 1643, 2550
PspGI	CCWGG	4 cut(s)	421, 1159, 1643, 2550
PspN4I	GGNNCC	7 cut(s)	103, 247, 663, 1158, 1485, 1847, 2556
PspPI	GGNCC	3 cut(s)	809, 1750, 3303
PspXI	VCTCGAGB	1 cut(s)	430
PsrI	GAACNNNNNNTAC	2 cut(s)	2538, 2570
PstI	CTGCAG	1 cut(s)	3543
PstNI	CAGNNNCTG	2 cut(s)	1779, 2411
PsuI	RGATCY	5 cut(s)	319, 661, 892, 1084, 2896
PvuII	CAGCTG	1 cut(s)	3770
RseI	CAYNNNNRTG	6 cut(s)	846, 1764, 1806, 1962, 3590, 3972
SalI	GTCGAC	1 cut(s)	2448
SapI	GCTCTTC	1 cut(s)	2100
Sau96I	GGNCC	3 cut(s)	809, 1750, 3303
ScaI	AGTACT	2 cut(s)	819, 1014
SchI	GAGTC	6 cut(s)	615, 992, 1120, 2386, 2671, 3536
ScrFI	CCNGG	7 cut(s)	312, 346, 423, 1161, 1645, 2552, 3306
SduI	GDGCHC	2 cut(s)	2757, 3749
SfcI	CTRYAG	6 cut(s)	925, 1016, 1524, 2364, 3214, 3539
Sfr274I	CTCGAG	1 cut(s)	430
SinI	GGWCC	2 cut(s)	809, 1750
SlaI	CTCGAG	1 cut(s)	430
SmiMI	CAYNNNNRTG	6 cut(s)	846, 1764, 1806, 1962, 3590, 3972
SmlI	CTYRAG	3 cut(s)	430, 2256, 4154
SmoI	CTYRAG	3 cut(s)	430, 2256, 4154
SpeI	ACTAGT	1 cut(s)	1330
SseBI	AGGCCT	2 cut(s)	2184, 2605
SsiI	CCGC	9 cut(s)	5, 30, 136, 151, 301, 1314, 3789, 3917, 3933
SspI	AATATT	1 cut(s)	1211
SspMI	CTAG	8 cut(s)	455, 489, 603, 1008, 1331, 2175, 3234, 3471
StuI	AGGCCT	2 cut(s)	2184, 2605
StyD4I	CCNGG	7 cut(s)	310, 344, 421, 1159, 1643, 2550, 3304
StyI	CCWWGG	6 cut(s)	272, 1792, 2606, 2703, 3057, 3299
TaiI	ACGT	2 cut(s)	120, 3067
TaqI	TCGA	7 cut(s)	179, 431, 2449, 2666, 2694, 2957, 3280
TaqII	GACCGA	1 cut(s)	2298
TatI	WGTACW	5 cut(s)	214, 817, 1012, 2402, 3833
TscAI	CASTG	9 cut(s)	547, 1528, 1959, 2428, 2602, 3112, 3610, 3702, 3843
TseFI	GTSAC	8 cut(s)	128, 397, 542, 1103, 1123, 1494, 1678, 2674
Tsp45I	GTSAC	8 cut(s)	128, 397, 542, 1103, 1123, 1494, 1678, 2674
TspGWI	ACGGA	4 cut(s)	86, 297, 719, 1386
TspRI	CASTG	9 cut(s)	547, 1528, 1959, 2428, 2602, 3112, 3610, 3702, 3843
VneI	GTGCAC	1 cut(s)	2753
VpaK11BI	GGWCC	2 cut(s)	809, 1750
XagI	CCTNNNNNAGG	1 cut(s)	2178
XapI	RAATTY	8 cut(s)	940, 970, 1133, 1224, 1855, 2437, 2709, 3097
XbaI	TCTAGA	1 cut(s)	1007
XceI	RCATGY	4 cut(s)	1725, 2675, 2874, 4018
XhoI	CTCGAG	1 cut(s)	430
XmiI	GTMKAC	4 cut(s)	501, 2449, 2459, 2734
XmnI	GAANNNNTTC	1 cut(s)	1948
XspI	CTAG	8 cut(s)	455, 489, 603, 1008, 1331, 2175, 3234, 3471
ZraI	GACGTC	1 cut(s)	3065
ZrmI	AGTACT	2 cut(s)	819, 1014
Zsp2I	ATGCAT	2 cut(s)	2015, 3781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.