Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011450

Physical Location & Seq

Genomic Coordinates Forward (+)

22345321 .. 22359807

Gene Structure 14487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG218800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3876 bp

ATGGCGGTCTCCGAGGAGGAGTGTTCCTCCGCCAACTCCAGATCATCCTCCTCCTCCACCTCCAGCACCTCTCACTACCTCTCCAAGTGCCTCCTCCGTGGCACCGTCGTTCTCCAGGTCCTCCACGGTCACATCCGCTTCCCCAACTCCCGCGACATCGTTTTCGGCAAGGAGAAATCGATAGAGTTGGTGATAATCGGTGAAGACGGGATTGTACAGTCTGTGTGTGAGCAGCCTGTGTTTGGCACCATTAAAGACATTGCCGTCCTACCTTGGAATGACGGATTCCGAACCCGAAACCGCCAGATGCCGGGCAAGGATCTTTTGGTCGTTGTTTCGGATTCCGGGAAGCTCTCGGTTCTATCTTTCTGCAATGAAATGCACAGGTTTTTTCCTGTGACACAAGTTCAACTTTCTAATCCTGGAAACTCGAGGAATCAGCTTGCAAGAATGCTGGCCATTGATTCAAGTGGCTGCTTCATTGCTGCTAGTGCATATGTAGACCGTTTGGCTATGTTCTCTGTTTCAATGTCTGGAGGCAGTGACATTATTGATAAGAAAATAGTGTATCCCCCTGAAAACGAAGTCAATGTGAATGCTGCTAGAGTCCAGAAAAACAGTATATCAGGTACTATATGGAGCATGAGCTTTATTTCACAGGATCCTAATCAAAGTAAGGGACATAATCCTATACTCGCCGTTGTTATGAATAGGACTGGGGCAGTCCGTAATGAATTGCTGTTACTGGGATGGAACATTAGAGAACAAGATGTTTATGTTATTTCTCAGTATGTAGAAGATGATGGACCCTTAGTACTTAGCATTGCTGAAGTTCCTCATTCGTATGGATTTGCTTTTCTGTTTAGGGAGGGTGATGCTATTTTAATGGATCTTAGAGATGCCAACAACCCTTATTGTATCTACAGAACAAGCCCAAATTTCTTATCCAATGTGGTTGATGAGGCAAATTTTGTTCAGGAGTCGTCTAAAGGATGTGATCTGTCTAGCGTACTACAGGTTGATGACGAAGGGGGTTTATTTAATGTAGCTGCCTGTGCGTTACTGGAACTGAGTGATTTAGATCCTATGTGTATAGATGGTGACAAATACAATGTGAATGTGACTCACAAATTTGTGTGTTCATGGAGTTGGGAACCAGGGAATGTTAAAAACCAAAGAATGATCATTTCTGCTGATACCGGAGAATATTTCATGATTGAAATTTTTTTCAACCCTGATGGCGTTAAGGTTCAAGAATCTGAGTGTCTTTACAAAGGTTTACCATGCAAGGCAATTTTGTGGGTTGACGGCGGGTTTCTGGCTGCACTAGTAGATATGGGGGATGGGATGGTCTTGAAAATGGAAAACGGAACACTTAATTACAGAAGTCCTATTCAAACCATTGTCCCAGTCTTGGATATGTCAGTTGTGGATTACCATGATGAGAAACATGATCAAATGTTTGCTTGTTGTGGAGTGGCACCGGAGGGGTCACTAAGGATCATTAGAAGTGGTATCACTGTAGAAAAGCTACTAAGGACTGCTCCTATATATCAAGGGATTACTGGCACTTGGACATTACGAATGAAGGTGAGTGATACTTACCATTCATTTCTTGTGCTATCATTTGTTGAGGAAACCAGGGTACTCTCAGTTGGTTTAAGCTTTACTGATGTGACTGATTCAGTTGGTTTCCAGCCTGATGTTTCTACTTTGGCATGTGGTGTTGTAAATGATGGAATGCTGGTCCAGATTCACAGAAGTGCAGTCAGGCTCTGTCTGCCCACCCAGGGTGCGCATTCTGATGGTGTTCCTTTGCCTTCTCCAGTTTGTACCTCTTGGTTCCCAGAAAATTTGAGCATCAGTTTGGGTGCTGTTGGGCATAATCTAATTGTTGTTTCTTCATCTAATCCCTGCTTTATATTCATACTTGGGGTCAGAATGCTTTCAGTGCATCATTATGAGATATATGAGATGCAACATTTGAGATTGCAAAATGAATTATCATGCATCTCCATTCCTCAGAACCGTTACGAGAAAAAAGATACAAGTTTTTCAAATAGTCTGGTAGATGAGAGTTCTGCCCCTGCTCTTCCATTTGGAGTTGACATCAGTAATATCTTTGTTATTGGAACACACAAGCCTTCGGTGGAAATCTTGTCTCTTGTACCTAGTGAAGGCCTACGAGTTCTTGCTTCTGGGGCAATTTCATTAACAAATACTTTTGGTACTGCTATTAGTGGCTGCATTCCTCAAGATGTAAGGCTTGTATTAGTTGACCGATTATATGTCCTTTCTGGATTGAGGAATGGAATGCTGCTTCGGTTTGAATGGCCTACTTCCTCTCGAAGGCCTTTATCTGTAGGACCTCAGAGTCCTGTTGATTGGCTTTCAGTTAGTACCGATACTGTTTTATCCAGTGTATCAGCAGCAAATTCTTTTGGTCGACATATGTATACTACTAAGTTATCTGAGAATATAAAGGACAACTTTCCTGTTGATTTGCAATTGATTGCTACCCGTCGGATTGGCATCACTCCTGTATTCCTGGTTCCTTTAAGTGATTCCCTTGATGGTGATGTAGTTGTTCTCAGTGATAGGCCTTGGTTGCTGCATACTGCAAGGCACAGCCTCTCATATACTTCTATCTCATTTCAATCTTCGACTCATGTGACTCCTGTATGTTATGTCGAATGCCCCAAGGGAATTTTATTTGTTGCAGAGAACTGTCTACATTTGGTAGAGATGTTGCACAGTAAGAGGCTTAATGTGCAGAAGTTGCATCTTGGAGGCACTCCGAGGAGGGTCTTTTATCATAGTGAAAGCAGGCTATTGCTTGTGATGAGGACTAATTTGAGTGATGATACATGTTCATCTGATATATGTTGCGTAGATCCTCTTAGTGGGTCGGTGCTGTCATCTTTCAAACTTGAATTTGGTGAAACTGGAAAATCGATGGAGTTAATGAGGGTTGGAAGTGAACAGGTTATTTTGGTTGGAACAAGTTTGTCTTCTGGGTCGGCCATAATGCCCTGTGGTGAGGCTGAAAGTACCAAGGGACGTCTTATTGTTCTCTGTCTTGAAAATATGCAAAATTCAGACAGTGGTTCAATGACATTCGGCTCAAAGGCAGGGTCATCTTCTCAACGAGCTTCCCCATTTCATGAAATTGTTGGGTATGCCACAGAACAGCTTTCAAGTAGTAGTCTCTGTAGTAGCCCAGATGATACTAGCTGTGATGGTATGAAACTTGAAGAAACTGAAGCGTGGCAGTTTCGATTAGCTTTTTCAATGCCATGGCCTGGAATGGTACTTGCAATCTGCCCTTATCTTGATCGTTACTTCTTGGCTTCTGCTGGTAATGCTTTTTATTTATGTGGTTTTCCACATGACAATTCCCAAAGAGTAAAAAAGTGGGCTGTGGCGAGGACGCGCTTTACAATTACATCTTTGACTGCATATTTCACTAGAATTGTTGTTGGTGATTGTCGTGATGGCATCCTTTTCTATGATTATCATGAGGAGTCCAAAAAGCTGCAGCAACTTTACTGTGATCCGTATCAGAGATTAGTTGGTGATTGCATTCTTATGGATGTCAACACTGCTGTTGTTTCAGATCGTAAGGGAAGCATTGCTGTCCTTTCATGTGCAGATTATTTAGAAGATACTGCAAGTCCAGAATGTAATTTAACAGTGAGCTGTGCTTATTATATGGGTGAGGTAGCTATGAGCATCAAGAAGGGCTCATTTTCATATAAACTTCCAGCTGATGATGCATTGAAAGGCAGTGATGGAAGTATTGACTTCTCTCAAAACGGTATCATTGTGAGTACACTGCTAGGAAGCATAATAACTTTCGTTCCAATATCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1291

Amino Acids

141.69

Weight (kDa)

5.32

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	37 - 467	3.6e-43	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	519 - 915	3.6e-30	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	1090 - 1290	1.2e-18	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11960 AT3G11960 AT3G11960 AT3G11960
fragaria_vesca	FvH4_6g21460 FvH4_6g21460 FvH4_6g21460
malus_domestica	MD14G1049600.v1.1
prunus_persica	Prupe.7G085900_v2.0.a1
pyrus_communis	pycom14g04060
rosa_chinensis	RchiOBHm_Chr3g0478641
rosa_laevigata	RLG00000023638
rosa_multiflora	Rmu_sc0005420.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403250
rosa_rugosa	Rorug03G0166800
rosa_samantha	Rh3AG218800 Rh3BG250400 Rh3CG247300 Rh3DG243600
rosa_wichuraiana	Rw3G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	263, 2373
AatII	GACGTC	1 cut(s)	3064
Acc16I	TGCGCA	1 cut(s)	1797
AccB1I	GGYRCC	3 cut(s)	101, 245, 1480
AccB7I	CCANNNNNTGG	1 cut(s)	3302
AccI	GTMKAC	4 cut(s)	501, 2446, 2456, 2731
AccII	CGCG	2 cut(s)	153, 3433
AciI	CCGC	6 cut(s)	5, 30, 136, 151, 301, 1311
AclWI	GGATC	8 cut(s)	327, 656, 669, 897, 1076, 1508, 2888, 3548
AcoI	YGGCCR	2 cut(s)	456, 3021
AcsI	RAATTY	9 cut(s)	937, 967, 1130, 1221, 1852, 2434, 2706, 2933, 3094
AcuI	CTGAAG	2 cut(s)	849, 3282
AcyI	GRCGYC	1 cut(s)	3061
AfiI	CCNNNNNNNGG	8 cut(s)	242, 310, 1414, 1790, 2177, 2349, 2903, 3302
AflIII	ACRYGT	1 cut(s)	2867
AhlI	ACTAGT	1 cut(s)	1327
AjnI	CCWGG	7 cut(s)	114, 421, 1156, 1640, 1788, 2547, 3301
AleI	CACNNNNGTG	1 cut(s)	1761
Alw26I	GTCTC	3 cut(s)	13, 2166, 3212
AlwI	GGATC	8 cut(s)	327, 656, 669, 897, 1076, 1508, 2888, 3548
AlwNI	CAGNNNCTG	1 cut(s)	1776
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	7 cut(s)	456, 2179, 2333, 2351, 2600, 3021, 3299
ApoI	RAATTY	9 cut(s)	937, 967, 1130, 1221, 1852, 2434, 2706, 2933, 3094
ArsI	GACNNNNNNTTYG	4 cut(s)	146, 178, 3119, 3151
Asp700I	GAANNNNTTC	1 cut(s)	1945
AspLEI	GCGC	2 cut(s)	1798, 3435
AspS9I	GGNCC	4 cut(s)	118, 806, 1747, 2366
AsuC2I	CCSGG	2 cut(s)	312, 346
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	4 cut(s)	118, 806, 1747, 2366
BalI	TGGCCA	1 cut(s)	458
BamHI	GGATCC	1 cut(s)	661
BanI	GGYRCC	3 cut(s)	101, 245, 1480
BanII	GRGCYC	1 cut(s)	3746
BbsI	GAAGAC	2 cut(s)	210, 3003
BceAI	ACGGC	3 cut(s)	248, 683, 1324
BciT130I	CCWGG	7 cut(s)	116, 423, 1158, 1642, 1790, 2549, 3303
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	2 cut(s)	1182, 1453
BcnI	CCSGG	2 cut(s)	312, 346
BcoDI	GTCTC	3 cut(s)	13, 2166, 3212
BcuI	ACTAGT	1 cut(s)	1327
BfaI	CTAG	8 cut(s)	489, 603, 1005, 1328, 2172, 3231, 3468, 3839
BfmI	CTRYAG	6 cut(s)	922, 1013, 1521, 2361, 3211, 3536
BfuI	GTATCC	1 cut(s)	579
BmcAI	AGTACT	1 cut(s)	816
Bme1390I	CCNGG	9 cut(s)	116, 312, 346, 423, 1158, 1642, 1790, 2549, 3303
Bme18I	GGWCC	4 cut(s)	118, 806, 1747, 2366
BmeT110I	CYCGRG	1 cut(s)	430
BmgT120I	GGNCC	4 cut(s)	118, 806, 1747, 2366
BmiI	GGNNCC	8 cut(s)	103, 247, 663, 808, 1155, 1482, 1844, 2553
BmrFI	CCNGG	9 cut(s)	116, 312, 346, 423, 1158, 1642, 1790, 2549, 3303
BmrI	ACTGGG	3 cut(s)	726, 755, 1403
BmuI	ACTGGG	3 cut(s)	726, 755, 1403
BpiI	GAAGAC	2 cut(s)	210, 3003
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	5 cut(s)	22, 46, 98, 555, 1809
BpuEI	CTTGAG	1 cut(s)	2238
BpuMI	CCSGG	2 cut(s)	312, 346
Bsa29I	ATCGAT	2 cut(s)	179, 2954
BsaBI	GATNNNNATC	4 cut(s)	666, 1080, 2531, 3558
BsaHI	GRCGYC	1 cut(s)	3061
BsaI	GGTCTC	1 cut(s)	13
BsaWI	WCCGGW	2 cut(s)	1199, 1483
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	8 cut(s)	242, 310, 1414, 1790, 2177, 2349, 2903, 3302
Bse1I	ACTGG	8 cut(s)	721, 750, 1068, 1409, 1570, 1826, 2418, 2950
Bse3DI	GCAATG	5 cut(s)	258, 379, 480, 822, 3630
Bse8I	GATNNNNATC	4 cut(s)	666, 1080, 2531, 3558
BseBI	CCWGG	7 cut(s)	116, 423, 1158, 1642, 1790, 2549, 3303
BseCI	ATCGAT	2 cut(s)	179, 2954
BseGI	GGATG	8 cut(s)	44, 132, 755, 998, 1348, 1353, 3498, 3598
BseJI	GATNNNNATC	4 cut(s)	666, 1080, 2531, 3558
BseLI	CCNNNNNNNGG	8 cut(s)	242, 310, 1414, 1790, 2177, 2349, 2903, 3302
BseMI	GCAATG	5 cut(s)	258, 379, 480, 822, 3630
BseMII	CTCAG	8 cut(s)	800, 1061, 1251, 1665, 2036, 2384, 2463, 2605
BseNI	ACTGG	8 cut(s)	721, 750, 1068, 1409, 1570, 1826, 2418, 2950
BseRI	GAGGAG	7 cut(s)	29, 32, 40, 43, 83, 2815, 3536
BsgI	GTGCAG	4 cut(s)	1308, 1785, 2792, 3669
Bsh1236I	CGCG	2 cut(s)	153, 3433
BshFI	GGCC	7 cut(s)	458, 2181, 2335, 2353, 2602, 3023, 3301
BshNI	GGYRCC	3 cut(s)	101, 245, 1480
BshVI	ATCGAT	2 cut(s)	179, 2954
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	4 cut(s)	311, 345, 1200, 1484
BslFI	GGGAC	3 cut(s)	693, 1391, 3072
BslI	CCNNNNNNNGG	8 cut(s)	242, 310, 1414, 1790, 2177, 2349, 2903, 3302
BsmAI	GTCTC	3 cut(s)	13, 2166, 3212
BsmFI	GGGAC	3 cut(s)	693, 1391, 3072
BsmI	GAATGC	9 cut(s)	456, 601, 1746, 1798, 1947, 2247, 2319, 2699, 3582
BsnI	GGCC	7 cut(s)	458, 2181, 2335, 2353, 2602, 3023, 3301
Bso31I	GGTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	3746
Bsp1407I	TGTACA	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	3296
BspACI	CCGC	6 cut(s)	5, 30, 136, 151, 301, 1311
BspANI	GGCC	7 cut(s)	458, 2181, 2335, 2353, 2602, 3023, 3301
BspCNI	CTCAG	8 cut(s)	799, 1062, 1252, 1664, 2035, 2383, 2464, 2604
BspDI	ATCGAT	2 cut(s)	179, 2954
BspFNI	CGCG	2 cut(s)	153, 3433
BspHI	TCATGA	3 cut(s)	1212, 3163, 3517
BspLI	GGNNCC	8 cut(s)	103, 247, 663, 808, 1155, 1482, 1844, 2553
BspMAI	CTGCAG	1 cut(s)	3540
BspPI	GGATC	8 cut(s)	327, 656, 669, 897, 1076, 1508, 2888, 3548
BspQI	GCTCTTC	1 cut(s)	2097
BspT107I	GGYRCC	3 cut(s)	101, 245, 1480
BspTNI	GGTCTC	1 cut(s)	13
BsrDI	GCAATG	5 cut(s)	258, 379, 480, 822, 3630
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	8 cut(s)	721, 750, 1068, 1409, 1570, 1826, 2418, 2950
BssNAI	GTATAC	1 cut(s)	2457
BssNI	GRCGYC	1 cut(s)	3061
BssT1I	CCWWGG	5 cut(s)	272, 2603, 2700, 3054, 3296
Bst1107I	GTATAC	1 cut(s)	2457
Bst2UI	CCWGG	7 cut(s)	116, 423, 1158, 1642, 1790, 2549, 3303
Bst6I	CTCTTC	1 cut(s)	2097
BstACI	GRCGYC	1 cut(s)	3061
BstAPI	GCANNNNNTGC	1 cut(s)	2779
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	444, 456, 2828
BstDSI	CCRYGG	3 cut(s)	97, 124, 3296
BstENI	CCTNNNNNAGG	2 cut(s)	2175, 2347
BstF5I	GGATG	8 cut(s)	44, 132, 755, 998, 1348, 1353, 3498, 3598
BstFNI	CGCG	2 cut(s)	153, 3433
BstHHI	GCGC	2 cut(s)	1798, 3435
BstMAI	GTCTC	3 cut(s)	13, 2166, 3212
BstNI	CCWGG	7 cut(s)	116, 423, 1158, 1642, 1790, 2549, 3303
BstNSI	RCATGY	2 cut(s)	1722, 2871
BstSCI	CCNGG	9 cut(s)	114, 310, 344, 421, 1156, 1640, 1788, 2547, 3301
BstSFI	CTRYAG	6 cut(s)	922, 1013, 1521, 2361, 3211, 3536
BstUI	CGCG	2 cut(s)	153, 3433
BstV2I	GAAGAC	2 cut(s)	210, 3003
BstX2I	RGATCY	5 cut(s)	319, 661, 889, 1081, 2893
BstYI	RGATCY	5 cut(s)	319, 661, 889, 1081, 2893
BstZ17I	GTATAC	1 cut(s)	2457
Bsu15I	ATCGAT	2 cut(s)	179, 2954
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	7 cut(s)	458, 2181, 2335, 2353, 2602, 3023, 3301
BsuTUI	ATCGAT	2 cut(s)	179, 2954
BtgI	CCRYGG	3 cut(s)	97, 124, 3296
BtsCI	GGATG	8 cut(s)	44, 132, 755, 998, 1348, 1353, 3498, 3598
BtsI	GCAGTG	4 cut(s)	547, 3600, 3793, 3833
Cac8I	GCNNGC	3 cut(s)	444, 456, 2828
CaiI	CAGNNNCTG	1 cut(s)	1776
CciI	TCATGA	3 cut(s)	1212, 3163, 3517
CfoI	GCGC	2 cut(s)	1798, 3435
Cfr13I	GGNCC	4 cut(s)	118, 806, 1747, 2366
ClaI	ATCGAT	2 cut(s)	179, 2954
CseI	GACGC	1 cut(s)	3439
DrdI	GACNNNNNNGTC	2 cut(s)	263, 2373
DseDI	GACNNNNNNGTC	2 cut(s)	263, 2373
EaeI	YGGCCR	2 cut(s)	456, 3021
Eam1104I	CTCTTC	1 cut(s)	2097
EarI	CTCTTC	1 cut(s)	2097
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	5 cut(s)	272, 2603, 2700, 3054, 3296
Eco147I	AGGCCT	3 cut(s)	2181, 2353, 2602
Eco24I	GRGCYC	1 cut(s)	3746
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	4 cut(s)	118, 806, 1747, 2366
Eco57I	CTGAAG	2 cut(s)	849, 3282
Eco88I	CYCGRG	1 cut(s)	430
EcoNI	CCTNNNNNAGG	2 cut(s)	2175, 2347
EcoO109I	RGGNCCY	2 cut(s)	118, 2366
EcoRII	CCWGG	7 cut(s)	114, 421, 1156, 1640, 1788, 2547, 3301
EcoT14I	CCWWGG	5 cut(s)	272, 2603, 2700, 3054, 3296
EcoT22I	ATGCAT	2 cut(s)	2012, 3778
EcoT38I	GRGCYC	1 cut(s)	3746
ErhI	CCWWGG	5 cut(s)	272, 2603, 2700, 3054, 3296
FalI	AAGNNNNNCTT	6 cut(s)	396, 428, 2474, 2506, 2995, 3027
FaqI	GGGAC	3 cut(s)	693, 1391, 3072
FauI	CCCGC	2 cut(s)	158, 1304
FauNDI	CATATG	2 cut(s)	496, 2451
FbaI	TGATCA	2 cut(s)	1182, 1453
FblI	GTMKAC	4 cut(s)	501, 2446, 2456, 2731
FokI	GGATG	8 cut(s)	31, 119, 762, 1005, 1355, 1360, 3485, 3605
FriOI	GRGCYC	1 cut(s)	3746
FspAI	RTGCGCAY	1 cut(s)	1797
FspBI	CTAG	8 cut(s)	489, 603, 1005, 1328, 2172, 3231, 3468, 3839
FspI	TGCGCA	1 cut(s)	1797
GlaI	GCGC	2 cut(s)	1797, 3434
GsuI	CTGGAG	5 cut(s)	22, 46, 98, 555, 1809
HaeIII	GGCC	7 cut(s)	458, 2181, 2335, 2353, 2602, 3023, 3301
HapII	CCGG	4 cut(s)	311, 345, 1200, 1484
HgaI	GACGC	1 cut(s)	3439
HhaI	GCGC	2 cut(s)	1798, 3435
Hin1I	GRCGYC	1 cut(s)	3061
Hin6I	GCGC	2 cut(s)	1796, 3433
HinP1I	GCGC	2 cut(s)	1796, 3433
HincII	GTYRAC	5 cut(s)	1306, 2107, 2278, 2447, 3598
HindII	GTYRAC	5 cut(s)	1306, 2107, 2278, 2447, 3598
HindIII	AAGCTT	1 cut(s)	1663
HpaII	CCGG	4 cut(s)	311, 345, 1200, 1484
Hpy99I	CGWCG	2 cut(s)	110, 2526
HpyAV	CCTTC	7 cut(s)	1022, 1582, 1830, 2154, 2171, 2343, 3733
HpyCH4IV	ACGT	1 cut(s)	3061
HpySE526I	ACGT	1 cut(s)	3061
Hsp92I	GRCGYC	1 cut(s)	3061
HspAI	GCGC	2 cut(s)	1796, 3433
Ksp22I	TGATCA	2 cut(s)	1182, 1453
LguI	GCTCTTC	1 cut(s)	2097
LmnI	GCTCC	2 cut(s)	639, 1549
MaeI	CTAG	8 cut(s)	489, 603, 1005, 1328, 2172, 3231, 3468, 3839
MaeII	ACGT	1 cut(s)	3061
MboII	GAAGA	9 cut(s)	215, 809, 1893, 2084, 2652, 3003, 3132, 3266, 3674
MfeI	CAATTG	1 cut(s)	2507
MflI	RGATCY	5 cut(s)	319, 661, 889, 1081, 2893
MhlI	GDGCHC	1 cut(s)	3746
MlsI	TGGCCA	1 cut(s)	458
MluNI	TGGCCA	1 cut(s)	458
MlyI	GAGTC	7 cut(s)	615, 989, 1117, 2383, 2659, 2668, 3533
MmeI	TCCRAC	3 cut(s)	2504, 2953, 2977
Mox20I	TGGCCA	1 cut(s)	458
Mph1103I	ATGCAT	2 cut(s)	2012, 3778
MroXI	GAANNNNTTC	1 cut(s)	1945
MscI	TGGCCA	1 cut(s)	458
MslI	CAYNNNNRTG	5 cut(s)	843, 1761, 1803, 1959, 3587
Msp20I	TGGCCA	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	3767
MspI	CCGG	4 cut(s)	311, 345, 1200, 1484
MspR9I	CCNGG	9 cut(s)	116, 312, 346, 423, 1158, 1642, 1790, 2549, 3303
MunI	CAATTG	1 cut(s)	2507
Mva1269I	GAATGC	9 cut(s)	456, 601, 1746, 1798, 1947, 2247, 2319, 2699, 3582
MvaI	CCWGG	7 cut(s)	116, 423, 1158, 1642, 1790, 2549, 3303
MvnI	CGCG	2 cut(s)	153, 3433
NciI	CCSGG	2 cut(s)	312, 346
NcoI	CCATGG	1 cut(s)	3296
NdeI	CATATG	2 cut(s)	496, 2451
NlaIV	GGNNCC	8 cut(s)	103, 247, 663, 808, 1155, 1482, 1844, 2553
NmuCI	GTSAC	8 cut(s)	128, 397, 542, 1100, 1120, 1491, 1675, 2671
NsbI	TGCGCA	1 cut(s)	1797
NsiI	ATGCAT	2 cut(s)	2012, 3778
NspI	RCATGY	2 cut(s)	1722, 2871
OliI	CACNNNNGTG	1 cut(s)	1761
PaeR7I	CTCGAG	1 cut(s)	430
PagI	TCATGA	3 cut(s)	1212, 3163, 3517
PasI	CCCWGGG	1 cut(s)	1789
PceI	AGGCCT	3 cut(s)	2181, 2353, 2602
PciI	ACATGT	1 cut(s)	2867
PciSI	GCTCTTC	1 cut(s)	2097
PctI	GAATGC	9 cut(s)	456, 601, 1746, 1798, 1947, 2247, 2319, 2699, 3582
PdmI	GAANNNNTTC	1 cut(s)	1945
PfeI	GAWTC	8 cut(s)	285, 341, 436, 464, 1256, 1682, 1753, 2564
PflMI	CCANNNNNTGG	1 cut(s)	3302
PfoI	TCCNGGA	2 cut(s)	344, 421
PleI	GAGTC	7 cut(s)	614, 988, 1117, 2382, 2659, 2668, 3532
PpsI	GAGTC	7 cut(s)	614, 988, 1117, 2382, 2659, 2668, 3532
PpuMI	RGGWCCY	2 cut(s)	118, 2366
PscI	ACATGT	1 cut(s)	2867
Psp5II	RGGWCCY	2 cut(s)	118, 2366
Psp6I	CCWGG	7 cut(s)	114, 421, 1156, 1640, 1788, 2547, 3301
PspGI	CCWGG	7 cut(s)	114, 421, 1156, 1640, 1788, 2547, 3301
PspN4I	GGNNCC	8 cut(s)	103, 247, 663, 808, 1155, 1482, 1844, 2553
PspPI	GGNCC	4 cut(s)	118, 806, 1747, 2366
PspPPI	RGGWCCY	2 cut(s)	118, 2366
PspXI	VCTCGAGB	1 cut(s)	430
PsrI	GAACNNNNNNTAC	2 cut(s)	2535, 2567
PstI	CTGCAG	1 cut(s)	3540
PstNI	CAGNNNCTG	1 cut(s)	1776
PsuI	RGATCY	5 cut(s)	319, 661, 889, 1081, 2893
PvuII	CAGCTG	1 cut(s)	3767
RseI	CAYNNNNRTG	5 cut(s)	843, 1761, 1803, 1959, 3587
SalI	GTCGAC	1 cut(s)	2445
SapI	GCTCTTC	1 cut(s)	2097
Sau96I	GGNCC	4 cut(s)	118, 806, 1747, 2366
ScaI	AGTACT	1 cut(s)	816
SchI	GAGTC	7 cut(s)	615, 989, 1117, 2383, 2659, 2668, 3533
ScrFI	CCNGG	9 cut(s)	116, 312, 346, 423, 1158, 1642, 1790, 2549, 3303
SduI	GDGCHC	1 cut(s)	3746
SfcI	CTRYAG	6 cut(s)	922, 1013, 1521, 2361, 3211, 3536
Sfr274I	CTCGAG	1 cut(s)	430
SinI	GGWCC	4 cut(s)	118, 806, 1747, 2366
SlaI	CTCGAG	1 cut(s)	430
SmiMI	CAYNNNNRTG	5 cut(s)	843, 1761, 1803, 1959, 3587
SmlI	CTYRAG	2 cut(s)	430, 2253
SmoI	CTYRAG	2 cut(s)	430, 2253
SpeI	ACTAGT	1 cut(s)	1327
SseBI	AGGCCT	3 cut(s)	2181, 2353, 2602
SsiI	CCGC	6 cut(s)	5, 30, 136, 151, 301, 1311
SspI	AATATT	1 cut(s)	1208
SspMI	CTAG	8 cut(s)	489, 603, 1005, 1328, 2172, 3231, 3468, 3839
StuI	AGGCCT	3 cut(s)	2181, 2353, 2602
StyD4I	CCNGG	9 cut(s)	114, 310, 344, 421, 1156, 1640, 1788, 2547, 3301
StyI	CCWWGG	5 cut(s)	272, 2603, 2700, 3054, 3296
TaiI	ACGT	1 cut(s)	3064
TaqI	TCGA	8 cut(s)	179, 431, 2347, 2446, 2663, 2691, 2954, 3277
TaqII	GACCGA	1 cut(s)	2295
TatI	WGTACW	3 cut(s)	214, 814, 3830
TfiI	GAWTC	8 cut(s)	285, 341, 436, 464, 1256, 1682, 1753, 2564
TseFI	GTSAC	8 cut(s)	128, 397, 542, 1100, 1120, 1491, 1675, 2671
Tsp45I	GTSAC	8 cut(s)	128, 397, 542, 1100, 1120, 1491, 1675, 2671
TspGWI	ACGGA	5 cut(s)	86, 297, 716, 1383, 3546
Van91I	CCANNNNNTGG	1 cut(s)	3302
VpaK11BI	GGWCC	4 cut(s)	118, 806, 1747, 2366
XagI	CCTNNNNNAGG	2 cut(s)	2175, 2347
XapI	RAATTY	9 cut(s)	937, 967, 1130, 1221, 1852, 2434, 2706, 2933, 3094
XceI	RCATGY	2 cut(s)	1722, 2871
XhoI	CTCGAG	1 cut(s)	430
XmiI	GTMKAC	4 cut(s)	501, 2446, 2456, 2731
XmnI	GAANNNNTTC	1 cut(s)	1945
XspI	CTAG	8 cut(s)	489, 603, 1005, 1328, 2172, 3231, 3468, 3839
ZraI	GACGTC	1 cut(s)	3062
ZrmI	AGTACT	1 cut(s)	816
Zsp2I	ATGCAT	2 cut(s)	2012, 3778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.