Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0011450

Physical Location & Seq

Genomic Coordinates Forward (+)

22732785 .. 22746333

Gene Structure 13549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4179 bp

ATGGCGGTCTCCGAGGAGGAGTGTTCCTCCGCCAACTCCAGATCATCCTCGTCCTCCACCTCCAGCACCTCTCACTACCTCTCCAAGTGCCTCCTCCGTGGCACCGTCGTTCTCCACGTCCTCCACGGTCACATCCGCTTCCCCAACTCCCGCGACATCGTTTTCGGCAAGGAGAAATCGATAGAGTTGGTGATAATCGGTGAAGATGGGATCGTACAGTCTGTGTGTGAGCAGCCTGTGTTTGGCACCATTAAAGACATTGCCGTCCTACCTTGGAATGACGGATTCCGAACCCGAAACCGCCAGATGCCGGGCAAGGATCTTTTGGTCGTTGTTTCGGATTCCGGGAAGCTCTCGGTTCTTTCTTTCTGCAATGAAATGCACAGGTTTTTTCCTGTTACACAAGTTCAACTTTCTAATCCTGGAAACTCGAGGAATCAGCTTGCAAGAATGCTAGCCATTGATTCAAGTGGCTGCTTCATTGCTGCTAGTGCATATGTAGACCGTTTGGCTATGTTCTCTGTTTCAATGTCTGGAGGCAGTGACATTATTGATAAGAAAATAGTGTATCCCCCTGAAAACGAAGTCAATGTGAATGCTGCTAGAGTCCAGAAAAACAGTATATCAGGTACTATATGGAGCATGAGCTTTATTTCACAGGATCCTAATCAAAGTAAGGGACATAATCCTATACTCGCCGTTGTTATAAATAGGACTGGGGCAGTCCGTAATGAATTGCTGTTACTGGGATGGAACATTAGAGAACAAGATGTTTATGTTATTTCTCAGTATGTAGAAGATGATGGACCTTTAGTACTAAGCATTGCTGAAGTTCCTCATTCGTATGGATTTGCTTTTCTGTTTAGGGAGGGTGATGCTATTTTAATGGATCTTAGAGATGCCAACAACCCTTATTGTATCTACAGAACAAGCCCAAATTTCTTATCCAATGTGGTTGATGAGGCAAATTTTGTTCAGGAGTCGTCTAAAGGATGTGATCTGTCTAGCGTACTACAGGTTGATGACGAAGGGGGTTTATTTAATGTAGCTGCCTGTGCGTTACTGGAACTGAGTGATTTAGATCCTATGTGTATAGATGGTGACAAATACAATGTGAATGTGACTCACAAATTTGTGTGTTCATGGAGTTGGGAACCAGGGAATGTTAAAAACCAAAGAATGATCATTTCTGCTGATACCGGAGAATATTTCATGATTGAAATTTTTTTCAACCCTGATGGCGTTAAGGTTCAAGAATCTGAGTGTCTTTACAAAGGTTTACCATGCAAGGCAATTTTGTGGGTTGAAGGCGGGTTTCTGGCTGCACTAGTAGATATGGGGGATGGGATGGTCTTGAAAATGGAAAACGGAACACTTCATTACAGAAGTCCTATTCAAACCATTGTCCCAGTCTTGGATATGTCAGTTGTGGATTACCATGATGAGAAACATGATCAAATGTTTGCTTGTTGTGGAGTGGCACCGGAGGGGTCACTAAGGATCATTAGAAGTGGTATCACTGTAGAAAAGCTACTAAGGACTGCTCCTATATATCAAGGGATTACTGGCACTTGGACATTACGAATGAAGGTGATTGATACTTACCATTCATTTCTCGTGCTATCATTTGTTGAGGAAACCAGGGTACTCTCAGTTGGTTTAAGCTTTACTGATGTGACTGATTCAGTTGGTTTCCAGCCTGATGTTTCTACTTTGGCATGTGGTGTTGTAAATGATGGAATGCTGGTCCAGATTCACAGAAGTGCAGTCAGGCTCTGTCTGCCCACCCAGGGTGCGCATTCTGATGGTGTTCCTTTGCCTTCTCCAGTTTGTACCTCTTGGTTCCCAGAAAATTTGAGCATCAGTTTGGGTGCTGTTGGGCATAATCTAATTGTTGTTTCTTCATCTAATCCCTGCTTTATATTCATACTTGGGGTCAGAATGCTTTCAGTGCATCATTATGAGATATATGAGATGCAACATTTGAGATTGCAAAATGAATTATCATGCATCTCCATTCCTCAGAACCGTTACGAGAAAAAAGATACAAGTTTCTCAAATAGTCTGGTAGATGAGAGTTCTGCCCCTGCTCTTCCATTTGGAGTTGACATCAGTAATATCTTTGTTATTGGAACACACAAGCCTTCGGTGGAAATCTTGTCTCTTGTACCTAGTGAAGGCTTACGAGTTCTTGCTTCTGGGGCAATTTCATTAACAAATACTTTTGGTACTGCTATTAGTGGCTGCATTCCTCAAGATGTAAGGCTTGTATTAGTTGACCGATTATATGTCCTTTCTGGATTGAGGAATGGAATGCTGCTACGGTTTGAATGGCCTACTTCCTCTCGAAGGCCTTTATCTGTAGGACCTCAGAGTCCTGTTGATTGGCTTTCAGTTAGTACAGATACTGTTTTATCCAGTGTATCAGCAGCAAATTCTTTTGGTCGACATATGTATACTACTAAGTTATCTGAGAATATAAAGGACAACTTTCCTGTTGATTTGCAATTGATTGCTACCCGTCGGATTGGAATCACTCCTGTATTCCTGGTTCCTTTAAGTGATTCCCTTGATGGTGATGTAGTTGTTCTCAGTGATAGGCCTTGGTTGCTGCATACTGCAAGGCACAGCCTCTCATATACTTCTATCTCATTTCAATCTTCGACTCATGTGACTCCTGTATGTTATGTCGAATGCCCCAAGGGAATTTTATTTGTTGCAGAGAACTGTCTACATTTGGTAGAGATGTTGCACAGTAAGAGGCTTAATGTGCAGAAGTTGCATCTTGGAGGCACTCCGAGGAGGGTCTTTTATCATAGTGAAAGCAGGCTATTGCTTGTGATGAGGACTAATTTGAGTGATGATACATGTTCATCTGATATATGTTGCGTAGATCCTCTTAGTGGGTCGGTGCTGTCATCTTTCAAACTTGAATTTGGTGAAACTGGAAAATCGATGGAGTTAATGAGGGTTGGAAGTGAACAGGTTATTTTGGTTGGAACAAGTTTGTCTTCTGGGTCGGCCATAATGCCCTGTGGTGAGGCTGAAAGTACCAAGGGACGTCTTATTGTTCTCTGTCTTGAAAATATGCAAAATTCAGACAGTGGTTCAATGATATTCGGCTCAAAGGCAGGGTCATCTTCTCAACGAGCTTCCCCATTTCATGAAATTGTTGGGTATGCCACAGAACAGCTTTCAAGTAGTAGTCTCTGTAGTAGCCCAGATGATACTAGCTGTGATGGTATGAAACTTGAAGAAACTGAAGCGTGGCAGTTTCGATTAGCTTTTTCAATGCCATGGCCTGGAATGGTACTTGCAATCTGCCCTTATCTTGATCGTTACTTCTTGGCTTCTGCTGGTAATGCTTTTTATTTATGTGGTTTTCCACATGACAATTCCCAAAGAGTAAAAAAGTGGGCTGTGGCGAGGACGCGCTTTACAATTACATCTTTGACTGCATATTTCACTAGAATTGTTGTTGGTGATTGTCGTGATGGCATCCTTTTCTATGATTATCATGAGGAGTCCAAAAAGCTGCAGCAACTTTACTGTGATCCGTATCAGAGATTAGTTGGTGATTGCATTCTTATGGATGTCAACACTGCTGTTGTTTCAGATCGTAAGGGAAGCATTGCTGTCCTTTCATGTGCAGATTATTTAGAAGATACTGCAAGTCCAGAATGTAATTTAACAGTGAGCTGTGCTTATTATATGAGTGAGGTAGCTATGAGCATCAAGAAGGGCTCATTTTCATATAAACTTCCAGCTGATGATGCATTGAAAGGCAGTGATGGAAGTATTGACTTCTCTCAAAACGGTATCATTGTGAGTACACTGCTAGGAAGCATAATAACTTTCGTTCCAATATCAAGGGAAGAATATGAACTCTTAGAAGCTGTCCAAGATAGACTGGCGGTACATCCATTAACCGCTCCTATTCTCGGAAATGATCATAATGAGTTTCGTAGCCGTGAAAATCCGGTTGGAGTACCCAAGATTCTTGATGCTGACATGCTCACTCAATTCTTGGAGCTTACAAGTATGCAACAAGAGGATGTATTATCATCACCTCTTTGCGTACAAGGCACGGTAAAGTCACGTTTGAAATTGCGAAGTTCGCCTGTTCCTGTCAATCAGGTTGTGCAACTCCTTGAGCGAGTTCACTATGCCCTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1392

Amino Acids

153.15

Weight (kDa)

5.34

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	37 - 467	2.4e-43	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	519 - 915	2.7e-29	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	1090 - 1343	1.5e-28	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11960 AT3G11960 AT3G11960 AT3G11960
fragaria_vesca	FvH4_6g21460 FvH4_6g21460 FvH4_6g21460
malus_domestica	MD14G1049600.v1.1
prunus_persica	Prupe.7G085900_v2.0.a1
pyrus_communis	pycom14g04060
rosa_chinensis	RchiOBHm_Chr3g0478641
rosa_laevigata	RLG00000023638
rosa_multiflora	Rmu_sc0005420.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403250
rosa_rugosa	Rorug03G0166800
rosa_samantha	Rh3AG218800 Rh3BG250400 Rh3CG247300 Rh3DG243600
rosa_wichuraiana	Rw3G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
AasI	GACNNNNNNGTC	2 cut(s)	263, 2373
AatII	GACGTC	1 cut(s)	3064
Acc16I	TGCGCA	1 cut(s)	1797
AccB1I	GGYRCC	3 cut(s)	101, 245, 1480
AccB7I	CCANNNNNTGG	1 cut(s)	3302
AccBSI	CCGCTC	1 cut(s)	3932
AccI	GTMKAC	4 cut(s)	501, 2446, 2456, 2731
AccII	CGCG	2 cut(s)	153, 3433
AciI	CCGC	8 cut(s)	5, 30, 136, 151, 301, 1311, 3914, 3930
AclWI	GGATC	9 cut(s)	218, 327, 656, 669, 897, 1076, 1508, 2888, 3548
AcoI	YGGCCR	1 cut(s)	3021
AcsI	RAATTY	9 cut(s)	937, 967, 1130, 1221, 1852, 2434, 2706, 2933, 3094
AcuI	CTGAAG	2 cut(s)	849, 3282
AcyI	GRCGYC	1 cut(s)	3061
AfiI	CCNNNNNNNGG	9 cut(s)	242, 310, 1414, 1790, 2177, 2349, 2903, 3302, 3941
AflIII	ACRYGT	1 cut(s)	2867
AhlI	ACTAGT	1 cut(s)	1327
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	6 cut(s)	421, 1156, 1640, 1788, 2547, 3301
AjuI	GAANNNNNNNTTGG	2 cut(s)	3966, 3998
AleI	CACNNNNGTG	1 cut(s)	1761
Alw26I	GTCTC	3 cut(s)	13, 2166, 3212
AlwI	GGATC	9 cut(s)	218, 327, 656, 669, 897, 1076, 1508, 2888, 3548
AlwNI	CAGNNNCTG	2 cut(s)	1776, 2408
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	5 cut(s)	2333, 2351, 2600, 3021, 3299
ApoI	RAATTY	9 cut(s)	937, 967, 1130, 1221, 1852, 2434, 2706, 2933, 3094
ArsI	GACNNNNNNTTYG	4 cut(s)	146, 178, 3119, 3151
Asp700I	GAANNNNTTC	1 cut(s)	1945
AspLEI	GCGC	2 cut(s)	1798, 3435
AspS9I	GGNCC	3 cut(s)	806, 1747, 2366
AsuC2I	CCSGG	2 cut(s)	312, 346
AsuNHI	GCTAGC	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	3 cut(s)	806, 1747, 2366
BamHI	GGATCC	1 cut(s)	661
BanI	GGYRCC	3 cut(s)	101, 245, 1480
BanII	GRGCYC	1 cut(s)	3746
BauI	CACGAG	1 cut(s)	1616
BbsI	GAAGAC	1 cut(s)	3003
BceAI	ACGGC	3 cut(s)	248, 683, 3954
BciT130I	CCWGG	6 cut(s)	423, 1158, 1642, 1790, 2549, 3303
BciVI	GTATCC	1 cut(s)	579
BclI	TGATCA	3 cut(s)	1182, 1453, 3949
BcnI	CCSGG	2 cut(s)	312, 346
BcoDI	GTCTC	3 cut(s)	13, 2166, 3212
BcuI	ACTAGT	1 cut(s)	1327
BfaI	CTAG	9 cut(s)	455, 489, 603, 1005, 1328, 2172, 3231, 3468, 3839
BfmI	CTRYAG	6 cut(s)	922, 1013, 1521, 2361, 3211, 3536
BfuI	GTATCC	1 cut(s)	579
BmcAI	AGTACT	1 cut(s)	816
Bme1390I	CCNGG	8 cut(s)	312, 346, 423, 1158, 1642, 1790, 2549, 3303
Bme18I	GGWCC	3 cut(s)	806, 1747, 2366
BmeT110I	CYCGRG	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	806, 1747, 2366
BmiI	GGNNCC	7 cut(s)	103, 247, 663, 1155, 1482, 1844, 2553
BmrFI	CCNGG	8 cut(s)	312, 346, 423, 1158, 1642, 1790, 2549, 3303
BmrI	ACTGGG	3 cut(s)	726, 755, 1403
BmtI	GCTAGC	1 cut(s)	458
BmuI	ACTGGG	3 cut(s)	726, 755, 1403
BpiI	GAAGAC	1 cut(s)	3003
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpmI	CTGGAG	4 cut(s)	22, 46, 555, 1809
BpuEI	CTTGAG	2 cut(s)	2238, 4172
BpuMI	CCSGG	2 cut(s)	312, 346
Bsa29I	ATCGAT	2 cut(s)	179, 2954
BsaBI	GATNNNNATC	4 cut(s)	666, 1080, 2531, 3558
BsaHI	GRCGYC	1 cut(s)	3061
BsaI	GGTCTC	1 cut(s)	13
BsaWI	WCCGGW	3 cut(s)	1199, 1483, 3979
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	9 cut(s)	242, 310, 1414, 1790, 2177, 2349, 2903, 3302, 3941
Bse1I	ACTGG	9 cut(s)	721, 750, 1068, 1409, 1570, 1826, 2418, 2950, 3915
Bse3DI	GCAATG	5 cut(s)	258, 379, 480, 822, 3630
Bse8I	GATNNNNATC	4 cut(s)	666, 1080, 2531, 3558
BseBI	CCWGG	6 cut(s)	423, 1158, 1642, 1790, 2549, 3303
BseCI	ATCGAT	2 cut(s)	179, 2954
BseJI	GATNNNNATC	4 cut(s)	666, 1080, 2531, 3558
BseLI	CCNNNNNNNGG	9 cut(s)	242, 310, 1414, 1790, 2177, 2349, 2903, 3302, 3941
BseMI	GCAATG	5 cut(s)	258, 379, 480, 822, 3630
BseMII	CTCAG	8 cut(s)	800, 1061, 1251, 1665, 2036, 2384, 2463, 2605
BseNI	ACTGG	9 cut(s)	721, 750, 1068, 1409, 1570, 1826, 2418, 2950, 3915
BseRI	GAGGAG	5 cut(s)	29, 32, 83, 2815, 3536
BsgI	GTGCAG	4 cut(s)	1308, 1785, 2792, 3669
Bsh1236I	CGCG	2 cut(s)	153, 3433
BshFI	GGCC	5 cut(s)	2335, 2353, 2602, 3023, 3301
BshNI	GGYRCC	3 cut(s)	101, 245, 1480
BshVI	ATCGAT	2 cut(s)	179, 2954
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	5 cut(s)	311, 345, 1200, 1484, 3980
BslFI	GGGAC	3 cut(s)	693, 1391, 3072
BslI	CCNNNNNNNGG	9 cut(s)	242, 310, 1414, 1790, 2177, 2349, 2903, 3302, 3941
BsmAI	GTCTC	3 cut(s)	13, 2166, 3212
BsmFI	GGGAC	3 cut(s)	693, 1391, 3072
BsmI	GAATGC	9 cut(s)	456, 601, 1746, 1798, 1947, 2247, 2319, 2699, 3582
BsnI	GGCC	5 cut(s)	2335, 2353, 2602, 3023, 3301
Bso31I	GGTCTC	1 cut(s)	13
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	3746
Bsp19I	CCATGG	1 cut(s)	3296
BspACI	CCGC	8 cut(s)	5, 30, 136, 151, 301, 1311, 3914, 3930
BspANI	GGCC	5 cut(s)	2335, 2353, 2602, 3023, 3301
BspCNI	CTCAG	8 cut(s)	799, 1062, 1252, 1664, 2035, 2383, 2464, 2604
BspDI	ATCGAT	2 cut(s)	179, 2954
BspFNI	CGCG	2 cut(s)	153, 3433
BspHI	TCATGA	3 cut(s)	1212, 3163, 3517
BspLI	GGNNCC	7 cut(s)	103, 247, 663, 1155, 1482, 1844, 2553
BspMAI	CTGCAG	1 cut(s)	3540
BspOI	GCTAGC	1 cut(s)	458
BspPI	GGATC	9 cut(s)	218, 327, 656, 669, 897, 1076, 1508, 2888, 3548
BspQI	GCTCTTC	1 cut(s)	2097
BspT107I	GGYRCC	3 cut(s)	101, 245, 1480
BspTNI	GGTCTC	1 cut(s)	13
BsrBI	CCGCTC	1 cut(s)	3932
BsrDI	GCAATG	5 cut(s)	258, 379, 480, 822, 3630
BsrI	ACTGG	9 cut(s)	721, 750, 1068, 1409, 1570, 1826, 2418, 2950, 3915
BssNAI	GTATAC	1 cut(s)	2457
BssNI	GRCGYC	1 cut(s)	3061
BssSI	CACGAG	1 cut(s)	1616
BssT1I	CCWWGG	5 cut(s)	272, 2603, 2700, 3054, 3296
Bst1107I	GTATAC	1 cut(s)	2457
Bst2BI	CACGAG	1 cut(s)	1616
Bst2UI	CCWGG	6 cut(s)	423, 1158, 1642, 1790, 2549, 3303
Bst6I	CTCTTC	1 cut(s)	2097
BstACI	GRCGYC	1 cut(s)	3061
BstAPI	GCANNNNNTGC	1 cut(s)	2779
BstC8I	GCNNGC	3 cut(s)	444, 456, 2828
BstDSI	CCRYGG	3 cut(s)	97, 124, 3296
BstENI	CCTNNNNNAGG	2 cut(s)	2175, 2347
BstFNI	CGCG	2 cut(s)	153, 3433
BstHHI	GCGC	2 cut(s)	1798, 3435
BstMAI	GTCTC	3 cut(s)	13, 2166, 3212
BstNI	CCWGG	6 cut(s)	423, 1158, 1642, 1790, 2549, 3303
BstNSI	RCATGY	3 cut(s)	1722, 2871, 4015
BstSCI	CCNGG	8 cut(s)	310, 344, 421, 1156, 1640, 1788, 2547, 3301
BstSFI	CTRYAG	6 cut(s)	922, 1013, 1521, 2361, 3211, 3536
BstUI	CGCG	2 cut(s)	153, 3433
BstV2I	GAAGAC	1 cut(s)	3003
BstX2I	RGATCY	5 cut(s)	319, 661, 889, 1081, 2893
BstYI	RGATCY	5 cut(s)	319, 661, 889, 1081, 2893
BstZ17I	GTATAC	1 cut(s)	2457
Bsu15I	ATCGAT	2 cut(s)	179, 2954
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	5 cut(s)	2335, 2353, 2602, 3023, 3301
BsuTUI	ATCGAT	2 cut(s)	179, 2954
BtgI	CCRYGG	3 cut(s)	97, 124, 3296
BtrI	CACGTC	1 cut(s)	118
BtsI	GCAGTG	4 cut(s)	547, 3600, 3793, 3833
Cac8I	GCNNGC	3 cut(s)	444, 456, 2828
CaiI	CAGNNNCTG	2 cut(s)	1776, 2408
CciI	TCATGA	3 cut(s)	1212, 3163, 3517
CfoI	GCGC	2 cut(s)	1798, 3435
Cfr13I	GGNCC	3 cut(s)	806, 1747, 2366
ClaI	ATCGAT	2 cut(s)	179, 2954
CseI	GACGC	1 cut(s)	3439
DrdI	GACNNNNNNGTC	2 cut(s)	263, 2373
DseDI	GACNNNNNNGTC	2 cut(s)	263, 2373
EaeI	YGGCCR	1 cut(s)	3021
Eam1104I	CTCTTC	1 cut(s)	2097
EarI	CTCTTC	1 cut(s)	2097
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	5 cut(s)	272, 2603, 2700, 3054, 3296
Eco147I	AGGCCT	2 cut(s)	2353, 2602
Eco24I	GRGCYC	1 cut(s)	3746
Eco31I	GGTCTC	1 cut(s)	13
Eco47I	GGWCC	3 cut(s)	806, 1747, 2366
Eco57I	CTGAAG	2 cut(s)	849, 3282
Eco88I	CYCGRG	1 cut(s)	430
EcoNI	CCTNNNNNAGG	2 cut(s)	2175, 2347
EcoO109I	RGGNCCY	1 cut(s)	2366
EcoRII	CCWGG	6 cut(s)	421, 1156, 1640, 1788, 2547, 3301
EcoT14I	CCWWGG	5 cut(s)	272, 2603, 2700, 3054, 3296
EcoT22I	ATGCAT	2 cut(s)	2012, 3778
EcoT38I	GRGCYC	1 cut(s)	3746
ErhI	CCWWGG	5 cut(s)	272, 2603, 2700, 3054, 3296
FalI	AAGNNNNNCTT	6 cut(s)	396, 428, 2474, 2506, 2995, 3027
FaqI	GGGAC	3 cut(s)	693, 1391, 3072
FauI	CCCGC	2 cut(s)	158, 1304
FauNDI	CATATG	2 cut(s)	496, 2451
FbaI	TGATCA	3 cut(s)	1182, 1453, 3949
FblI	GTMKAC	4 cut(s)	501, 2446, 2456, 2731
FriOI	GRGCYC	1 cut(s)	3746
FspAI	RTGCGCAY	1 cut(s)	1797
FspBI	CTAG	9 cut(s)	455, 489, 603, 1005, 1328, 2172, 3231, 3468, 3839
FspI	TGCGCA	1 cut(s)	1797
GlaI	GCGC	2 cut(s)	1797, 3434
GsuI	CTGGAG	4 cut(s)	22, 46, 555, 1809
HaeIII	GGCC	5 cut(s)	2335, 2353, 2602, 3023, 3301
HapII	CCGG	5 cut(s)	311, 345, 1200, 1484, 3980
HgaI	GACGC	1 cut(s)	3439
HhaI	GCGC	2 cut(s)	1798, 3435
Hin1I	GRCGYC	1 cut(s)	3061
Hin6I	GCGC	2 cut(s)	1796, 3433
HinP1I	GCGC	2 cut(s)	1796, 3433
HincII	GTYRAC	4 cut(s)	2107, 2278, 2447, 3598
HindII	GTYRAC	4 cut(s)	2107, 2278, 2447, 3598
HindIII	AAGCTT	1 cut(s)	1663
HpaII	CCGG	5 cut(s)	311, 345, 1200, 1484, 3980
Hpy99I	CGWCG	2 cut(s)	110, 2526
HpyAV	CCTTC	8 cut(s)	1022, 1301, 1582, 1830, 2154, 2171, 2343, 3733
HpyCH4IV	ACGT	3 cut(s)	117, 3061, 4099
HpySE526I	ACGT	3 cut(s)	117, 3061, 4099
Hsp92I	GRCGYC	1 cut(s)	3061
HspAI	GCGC	2 cut(s)	1796, 3433
Ksp22I	TGATCA	3 cut(s)	1182, 1453, 3949
LguI	GCTCTTC	1 cut(s)	2097
LmnI	GCTCC	4 cut(s)	639, 1549, 3937, 4030
MaeI	CTAG	9 cut(s)	455, 489, 603, 1005, 1328, 2172, 3231, 3468, 3839
MaeII	ACGT	3 cut(s)	117, 3061, 4099
MbiI	CCGCTC	1 cut(s)	3932
MfeI	CAATTG	1 cut(s)	2507
MflI	RGATCY	5 cut(s)	319, 661, 889, 1081, 2893
MhlI	GDGCHC	1 cut(s)	3746
MlyI	GAGTC	7 cut(s)	615, 989, 1117, 2383, 2659, 2668, 3533
MmeI	TCCRAC	4 cut(s)	2504, 2953, 2977, 3964
Mph1103I	ATGCAT	2 cut(s)	2012, 3778
MroXI	GAANNNNTTC	1 cut(s)	1945
MslI	CAYNNNNRTG	5 cut(s)	843, 1761, 1803, 1959, 3587
MspA1I	CMGCKG	1 cut(s)	3767
MspI	CCGG	5 cut(s)	311, 345, 1200, 1484, 3980
MspR9I	CCNGG	8 cut(s)	312, 346, 423, 1158, 1642, 1790, 2549, 3303
MunI	CAATTG	1 cut(s)	2507
Mva1269I	GAATGC	9 cut(s)	456, 601, 1746, 1798, 1947, 2247, 2319, 2699, 3582
MvaI	CCWGG	6 cut(s)	423, 1158, 1642, 1790, 2549, 3303
MvnI	CGCG	2 cut(s)	153, 3433
NciI	CCSGG	2 cut(s)	312, 346
NcoI	CCATGG	1 cut(s)	3296
NdeI	CATATG	2 cut(s)	496, 2451
NheI	GCTAGC	1 cut(s)	454
NlaIV	GGNNCC	7 cut(s)	103, 247, 663, 1155, 1482, 1844, 2553
NmuCI	GTSAC	8 cut(s)	128, 542, 1100, 1120, 1491, 1675, 2671, 4095
NsbI	TGCGCA	1 cut(s)	1797
NsiI	ATGCAT	2 cut(s)	2012, 3778
NspI	RCATGY	3 cut(s)	1722, 2871, 4015
OliI	CACNNNNGTG	1 cut(s)	1761
PaeR7I	CTCGAG	1 cut(s)	430
PagI	TCATGA	3 cut(s)	1212, 3163, 3517
PasI	CCCWGGG	1 cut(s)	1789
PceI	AGGCCT	2 cut(s)	2353, 2602
PciI	ACATGT	1 cut(s)	2867
PciSI	GCTCTTC	1 cut(s)	2097
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	9 cut(s)	456, 601, 1746, 1798, 1947, 2247, 2319, 2699, 3582
PdmI	GAANNNNTTC	1 cut(s)	1945
PflMI	CCANNNNNTGG	1 cut(s)	3302
PfoI	TCCNGGA	2 cut(s)	344, 421
PleI	GAGTC	7 cut(s)	614, 988, 1117, 2382, 2659, 2668, 3532
PpsI	GAGTC	7 cut(s)	614, 988, 1117, 2382, 2659, 2668, 3532
PpuMI	RGGWCCY	1 cut(s)	2366
PscI	ACATGT	1 cut(s)	2867
PsiI	TTATAA	1 cut(s)	707
Psp5II	RGGWCCY	1 cut(s)	2366
Psp6I	CCWGG	6 cut(s)	421, 1156, 1640, 1788, 2547, 3301
PspGI	CCWGG	6 cut(s)	421, 1156, 1640, 1788, 2547, 3301
PspN4I	GGNNCC	7 cut(s)	103, 247, 663, 1155, 1482, 1844, 2553
PspPI	GGNCC	3 cut(s)	806, 1747, 2366
PspPPI	RGGWCCY	1 cut(s)	2366
PspXI	VCTCGAGB	1 cut(s)	430
PsrI	GAACNNNNNNTAC	2 cut(s)	2535, 2567
PstI	CTGCAG	1 cut(s)	3540
PstNI	CAGNNNCTG	2 cut(s)	1776, 2408
PsuI	RGATCY	5 cut(s)	319, 661, 889, 1081, 2893
PvuII	CAGCTG	1 cut(s)	3767
RseI	CAYNNNNRTG	5 cut(s)	843, 1761, 1803, 1959, 3587
SalI	GTCGAC	1 cut(s)	2445
SapI	GCTCTTC	1 cut(s)	2097
Sau96I	GGNCC	3 cut(s)	806, 1747, 2366
ScaI	AGTACT	1 cut(s)	816
SchI	GAGTC	7 cut(s)	615, 989, 1117, 2383, 2659, 2668, 3533
ScrFI	CCNGG	8 cut(s)	312, 346, 423, 1158, 1642, 1790, 2549, 3303
SduI	GDGCHC	1 cut(s)	3746
SfcI	CTRYAG	6 cut(s)	922, 1013, 1521, 2361, 3211, 3536
Sfr274I	CTCGAG	1 cut(s)	430
SinI	GGWCC	3 cut(s)	806, 1747, 2366
SlaI	CTCGAG	1 cut(s)	430
SmiMI	CAYNNNNRTG	5 cut(s)	843, 1761, 1803, 1959, 3587
SmlI	CTYRAG	3 cut(s)	430, 2253, 4151
SmoI	CTYRAG	3 cut(s)	430, 2253, 4151
SpeI	ACTAGT	1 cut(s)	1327
SseBI	AGGCCT	2 cut(s)	2353, 2602
SsiI	CCGC	8 cut(s)	5, 30, 136, 151, 301, 1311, 3914, 3930
SspI	AATATT	1 cut(s)	1208
SspMI	CTAG	9 cut(s)	455, 489, 603, 1005, 1328, 2172, 3231, 3468, 3839
StuI	AGGCCT	2 cut(s)	2353, 2602
StyD4I	CCNGG	8 cut(s)	310, 344, 421, 1156, 1640, 1788, 2547, 3301
StyI	CCWWGG	5 cut(s)	272, 2603, 2700, 3054, 3296
TaiI	ACGT	3 cut(s)	120, 3064, 4102
TaqI	TCGA	8 cut(s)	179, 431, 2347, 2446, 2663, 2691, 2954, 3277
TaqII	GACCGA	1 cut(s)	2295
TatI	WGTACW	3 cut(s)	814, 2399, 3830
TseFI	GTSAC	8 cut(s)	128, 542, 1100, 1120, 1491, 1675, 2671, 4095
Tsp45I	GTSAC	8 cut(s)	128, 542, 1100, 1120, 1491, 1675, 2671, 4095
TspGWI	ACGGA	5 cut(s)	86, 297, 716, 1383, 3546
Van91I	CCANNNNNTGG	1 cut(s)	3302
VpaK11BI	GGWCC	3 cut(s)	806, 1747, 2366
XagI	CCTNNNNNAGG	2 cut(s)	2175, 2347
XapI	RAATTY	9 cut(s)	937, 967, 1130, 1221, 1852, 2434, 2706, 2933, 3094
XceI	RCATGY	3 cut(s)	1722, 2871, 4015
XhoI	CTCGAG	1 cut(s)	430
XmiI	GTMKAC	4 cut(s)	501, 2446, 2456, 2731
XmnI	GAANNNNTTC	1 cut(s)	1945
XspI	CTAG	9 cut(s)	455, 489, 603, 1005, 1328, 2172, 3231, 3468, 3839
ZraI	GACGTC	1 cut(s)	3062
ZrmI	AGTACT	1 cut(s)	816
Zsp2I	ATGCAT	2 cut(s)	2012, 3778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.