Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011450

Physical Location & Seq

Genomic Coordinates Forward (+)

23496957 .. 23778634

Gene Structure 281678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG243600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4107 bp

ATGGAGAAATCAATAGAGTTGGTGATAATCGGTGAAGACGAGATTGTACAGTCTGTGTGTGAGCAGCCTGTGTTTGGCACCATTAAAGACATTGCCGTCCTACCATGGAATGACGGATTCCAAACCCGAAACCTCCAGGTGTCTAGCTCAATTCAACGAGTTCAGCCTTTTGTTTCGAGAATTAACTATTACATTGAGAAAAATAAATTTTGTGCTCATGTTGGTGTAGATGTCATGTCGGGCAAGGATCTTTTGGTCGTTGTTTCGGATTCCGGGAAGCTCTCGGTTCTATCTTTCTGCAATGAAATGCACAGGTTTTTTCCTGTGACACAAGTTCAACTTTCTAATCCTGGAAACTCGAGGAATCAGCTTGCAAGAATGCTAGCCATTGATTCAAGTGGCTGCTTCATTGCTGCTAGTGCATACGTAGACCGTTTGGCTATGTTCTCTGTTTCAATGTCTGGAGGCAGTGACATTATTGATAAGAAAATAGTGTATCCCCCTGAAAACGAAGTCAATGTGAATGCTGCTAGAGTCCAGAAAAACAGTATATCAGGTACTATATGGAGCATGAGCTTTATTTCACAGGATCCTAATCAAAGTAAGGGACATAATCCTATACTCGCCGTTGTTATAAATAGGACTGGGGCAGTCCGTAATGAATTGCTGTTACTGGGATGGAACATTAGAGAACAAGATGTTTATGTTATTTCTCAGTATGTAGAAGATGATGGACCTTTAGTACTTAGCATTGCTGAAGTTCCTCATTCGTATGGATTTGCTTTTCTGTTTAGGGAGGGTGATGCTATTTTAATGGATCTTAGAGATGCCAACAACCCTTATTGTATCTACAGAACAAGCCCAAATTTCTTATCCAATGTGGTTGATGAGGCAAATTTTGTTCAGGAGTCGTCTAAAGGATGTGATCTGTCTAGCGTACTACAGGTTGATGACGAAGGGGGTTTATTTAATGTAGCTGCCTGTGCGTTACTGGAACTGAGTGATTTAGATCCTATGTGTATAGATGGTGACAAATACAATGTGAATGTGACTCACAAATTTGTGTGTTCATGGAGTTGGGAACCAGGGAATGTTAAAAACCAAAGAATGATCATTTCTGCTGATACCGGAGAATATTTCATGATTGAAATTTTTTTCAACCCTGATGGCGTTAAGGTTCAAGAATCTGAGTGTCTTTACAAAGGTTTACCATGCAAGGCAATTTTGTGGGTTGAAGGCGGGTTTCTGGCTGCACTAGTAGATATGGGGGATGGGATGGTCTTGAAAATGGAAAACGGAACACTTCATTACAGAAGTCCTATTCAAACCATTGTCCCAGTCTTGGATATGTCAGTTGTGGATTACCATGATGAGAAACATGATCAAATGTTTGCTTGTTGTGGAGTGGCACCGGAGGGGTCACTAAGGATCATTAGAAGTGGTATCACTGTAGAAAAGCTACTAAGGACTGCTCCTATATATCAAGGGATTACTGGCACTTGGACATTACGAATGAAGGTGATTGATACTTACCATTCATTTCTTGTGCTATCATTTGTTGAGGAAACCAGGGTACTCTCAGTTGGTTTAAGCTTTACTGATGTGACTGATTCAGTTGGTTTCCAGCCTGATGTTTCTACTTTGGCATGTGGTGTTGTAAATGATGGAATGCTGGTCCAGATTCACAGAAGTGCAGTCAGGCTCTGTCTGCCCACCCAGGGTGCGCATTCTGATGGTGTTCCTTTGCCTTCTCCAGTTTGTACCTCTTGGTTCCCAGAAAATTTGAGCATCAGTTTGGGTGCTGTTGGGCATAATCTAATTGTTGTTTCTTCATCTAATCCCTGCTTTATCTTCATACTTGGGGTCAGAATGCTTTCAGTGCATCATTATGAGATATATGAGATGCAACATTTGAGATTGCAAAATGAATTATCATGCATCTCCATTCCTCAGAACCGTTACGAGAAAAAAGATACAAGTTTTTCAAACAGTCTGGTAGATGAGAGTTCTGCCCCTGCTCTTCCATTTGGAGTTGACATCAGTAATATCTTTGTTATTGGAACACACAAGCCTTCAGTGGAAATCTTGTCTCTTGTACCTAGTGAAGGCCTACGAGTTCTTGCTTCTGGGGCAATTTCATTAACAAATACTTTTGGTACTGCTATTAGTGGCTGCATTCCTCAAGATGCAAGGCTTGTATTAGTTGACCGATTATATGTCCTTTCTGGATTGAGGAATGGAATGCTGCTTCGGTTTGAATGGCCTACTTCCTCTCGAAGGCCTTTATCTGTAGGACCTCAGAGTCCTGTTGATTGGCTTTCAGTTAGTACAGATACTGTTTTATCCAGTGTATCAGCAGCAAATTCTTTTGGTCGACATATTTATACTACCAAGTTATCTGAGAATATAAAGGACAACTTTCCTGTTGATTTGCAATTGATTGCTACCCGTCGGATTGGCATCACTCCTGTATTCCTGGTTCCTTTAAGTGATTCCCTTGATGGTGATGTAGTTGTTCTCAGTGATAGGCCTTGGTTGCTGCATACTGCAAGGCACAGCCTCTCATATACTTCTATCTCATTTCAATCTTCGACTCATGTGACTCCTGTATGTTATGTCGAATGCCCCAAGGGAATTTTATTTGTTGCAGAGAACTGTCTACATTTGGTAGAGATGTTGCACAGTAAGAGGCTTAATGTGCAGAAGTTGCATCTTGGAGGCACTCCGAGGAGGGTCTTTTATCATAGTGAAAGCAGGCTATTGCTTGTGATGAGGACTAATTTGAGTGATGATACATGTTCATCTGATATATGTTGCGTAGATCCTCTTAGTGGGTCGGTGCTGTCATCTTTCAAACTTGAATTTGGTGAAACTGGAAAATCGATGGAGTTAATGAGGGTTGGAAGTGAACAGGTTATTTTGGTTGGAACAAGTTTGTCTTCTGGGTCGGCCATAATGCCCTGTGGTGAGGCTGAAAGTACCAAGGGACGTCTTATTGTTCTCTGTCTTGAAAATATGCAAAATTCAGACAGTGGTTCAATGACATTCGGCTCAAAGGCAGGGTCATCTTCTCAACGAGCTTCCCCATTTCATGAAATTGTTGGGTATGCCACAGAACAGCTTTCAAGTAGTAGTCTCTGTAGTAGCCCAGATGATACTAGCTGTGATGGTATGAAACTTGAAGAAACTGAAGCGTGGCAGTTTCGATTAGCTTTTTCAATGCCATGGCCTGGAATGGTACTTGCAATCTGCCCTTATCTTGATCGTTACTTCTTGGCTTCTGCTGGTAATGCTTTTTATTTATGTGGTTTTCCACATGACAATTCTCAAAGAGTAAAAAAGTGGGCTGTGGCGAGGACGCGCTTTACAATTACATCTTTGACTGCATATTTCACTAGAATTGTTGTTGGTGATTGTCGTGATGGCATCCTTTTCTATGATTATCATGAGGAGTCCAAAAAGCTGCAGCAACTTTACTGTGATCCGTATCAGAGATTAGTTGGTGATTGCATTCTTATGGATGTCAACACTGCTGTTGTTTCAGATCGTAAGGGAAGCATTGCTGTCCTTTCATGTGCAGATTATTTAGAAGATACTGCAAGTCCAGAATGTAATTTAACAGTGAGCTGTGCTTATTATATGGGTGAGGTAGCTATGAGCATCAAGAAGGGCTCATTTTCATATAAACTTCCAGCTGATGATGCATTGAAAGGCAGTGATGGAAGTATTGACTTCTCTCAAAACGGTATCATTGTGAGTACACTGCTAGGAAGCATAATAACTTTTGTTCCAATATCAAGGGAAGAATATGAACTCTTAGAAGCTGTCCAAGATAGACTGGCGGTACATCCATTAACCGCTCCTATTCTCGGAAATGATCATAATGAGTTTCGTAGCCGTGAAAATCCGGTTGGAGTACCCAAGATTCTTGATGCTGACATGCTCACTCAATTCTTGGAGCTTACGAGTATGCAACAAGAGGATGTATTATCATCACCTCTTTGCGTACAAGGCACAGTAAAGTCACGTTTGAAATTGCGAAGTTCGCCTGTTCCTGTCAATCAGGTTGTGCAACTCCTTGAGCGAGTTCACTATGCCCTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1368

Amino Acids

150.68

Weight (kDa)

5.19

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	2 - 443	1e-34	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	495 - 891	3.4e-29	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	1066 - 1319	2.6e-29	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11960 AT3G11960 AT3G11960 AT3G11960
fragaria_vesca	FvH4_6g21460 FvH4_6g21460 FvH4_6g21460
malus_domestica	MD14G1049600.v1.1
prunus_persica	Prupe.7G085900_v2.0.a1
pyrus_communis	pycom14g04060
rosa_chinensis	RchiOBHm_Chr3g0478641
rosa_laevigata	RLG00000023638
rosa_multiflora	Rmu_sc0005420.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403250
rosa_rugosa	Rorug03G0166800
rosa_samantha	Rh3AG218800 Rh3BG250400 Rh3CG247300 Rh3DG243600
rosa_wichuraiana	Rw3G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AasI	GACNNNNNNGTC	2 cut(s)	95, 2301
AatII	GACGTC	1 cut(s)	2992
Acc16I	TGCGCA	1 cut(s)	1725
AccB1I	GGYRCC	2 cut(s)	77, 1408
AccB7I	CCANNNNNTGG	1 cut(s)	3230
AccBSI	CCGCTC	1 cut(s)	3860
AccI	GTMKAC	3 cut(s)	429, 2374, 2659
AccII	CGCG	1 cut(s)	3361
AciI	CCGC	3 cut(s)	1239, 3842, 3858
AclWI	GGATC	8 cut(s)	255, 584, 597, 825, 1004, 1436, 2816, 3476
AcoI	YGGCCR	1 cut(s)	2949
AcuI	CTGAAG	3 cut(s)	777, 2058, 3210
AcyI	GRCGYC	1 cut(s)	2989
AfiI	CCNNNNNNNGG	8 cut(s)	74, 1342, 1718, 2105, 2277, 2831, 3230, 3869
AflIII	ACRYGT	1 cut(s)	2795
AhlI	ACTAGT	1 cut(s)	1255
AjnI	CCWGG	7 cut(s)	135, 349, 1084, 1568, 1716, 2475, 3229
AjuI	GAANNNNNNNTTGG	2 cut(s)	3894, 3926
AleI	CACNNNNGTG	1 cut(s)	1689
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	2094, 3140
AlwI	GGATC	8 cut(s)	255, 584, 597, 825, 1004, 1436, 2816, 3476
AlwNI	CAGNNNCTG	2 cut(s)	1704, 2336
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	6 cut(s)	2107, 2261, 2279, 2528, 2949, 3227
ArsI	GACNNNNNNTTYG	2 cut(s)	3047, 3079
Asp700I	GAANNNNTTC	1 cut(s)	1873
AspLEI	GCGC	2 cut(s)	1726, 3363
AspS9I	GGNCC	3 cut(s)	734, 1675, 2294
AsuC2I	CCSGG	1 cut(s)	274
AsuNHI	GCTAGC	1 cut(s)	382
AvaI	CYCGRG	1 cut(s)	358
AvaII	GGWCC	3 cut(s)	734, 1675, 2294
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	2 cut(s)	77, 1408
BanII	GRGCYC	1 cut(s)	3674
BbsI	GAAGAC	2 cut(s)	42, 2931
Bbv12I	GWGCWC	1 cut(s)	217
BceAI	ACGGC	3 cut(s)	80, 611, 3882
BciT130I	CCWGG	7 cut(s)	137, 351, 1086, 1570, 1718, 2477, 3231
BciVI	GTATCC	1 cut(s)	507
BclI	TGATCA	3 cut(s)	1110, 1381, 3877
BcnI	CCSGG	1 cut(s)	274
BcoDI	GTCTC	2 cut(s)	2094, 3140
BcuI	ACTAGT	1 cut(s)	1255
BfmI	CTRYAG	6 cut(s)	850, 941, 1449, 2289, 3139, 3464
BfuI	GTATCC	1 cut(s)	507
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	8 cut(s)	137, 274, 351, 1086, 1570, 1718, 2477, 3231
Bme18I	GGWCC	3 cut(s)	734, 1675, 2294
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	3 cut(s)	734, 1675, 2294
BmiI	GGNNCC	6 cut(s)	79, 591, 1083, 1410, 1772, 2481
BmrFI	CCNGG	8 cut(s)	137, 274, 351, 1086, 1570, 1718, 2477, 3231
BmrI	ACTGGG	3 cut(s)	654, 683, 1331
BmtI	GCTAGC	1 cut(s)	386
BmuI	ACTGGG	3 cut(s)	654, 683, 1331
BpiI	GAAGAC	2 cut(s)	42, 2931
BpmI	CTGGAG	3 cut(s)	119, 483, 1737
BpuEI	CTTGAG	2 cut(s)	2166, 4100
BpuMI	CCSGG	1 cut(s)	274
Bsa29I	ATCGAT	1 cut(s)	2882
BsaAI	YACGTR	1 cut(s)	427
BsaBI	GATNNNNATC	4 cut(s)	594, 1008, 2459, 3486
BsaHI	GRCGYC	1 cut(s)	2989
BsaWI	WCCGGW	3 cut(s)	1127, 1411, 3907
Bsc4I	CCNNNNNNNGG	8 cut(s)	74, 1342, 1718, 2105, 2277, 2831, 3230, 3869
Bse1I	ACTGG	9 cut(s)	649, 678, 996, 1337, 1498, 1754, 2346, 2878, 3843
Bse3DI	GCAATG	5 cut(s)	90, 307, 408, 750, 3558
Bse8I	GATNNNNATC	4 cut(s)	594, 1008, 2459, 3486
BseBI	CCWGG	7 cut(s)	137, 351, 1086, 1570, 1718, 2477, 3231
BseCI	ATCGAT	1 cut(s)	2882
BseGI	GGATG	8 cut(s)	683, 926, 1276, 1281, 3426, 3526, 3847, 3988
BseJI	GATNNNNATC	4 cut(s)	594, 1008, 2459, 3486
BseLI	CCNNNNNNNGG	8 cut(s)	74, 1342, 1718, 2105, 2277, 2831, 3230, 3869
BseMI	GCAATG	5 cut(s)	90, 307, 408, 750, 3558
BseMII	CTCAG	8 cut(s)	728, 989, 1179, 1593, 1964, 2312, 2391, 2533
BseNI	ACTGG	9 cut(s)	649, 678, 996, 1337, 1498, 1754, 2346, 2878, 3843
BseRI	GAGGAG	2 cut(s)	2743, 3464
BsgI	GTGCAG	4 cut(s)	1236, 1713, 2720, 3597
Bsh1236I	CGCG	1 cut(s)	3361
BshFI	GGCC	6 cut(s)	2109, 2263, 2281, 2530, 2951, 3229
BshNI	GGYRCC	2 cut(s)	77, 1408
BshVI	ATCGAT	1 cut(s)	2882
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	4 cut(s)	273, 1128, 1412, 3908
BslFI	GGGAC	3 cut(s)	621, 1319, 3000
BslI	CCNNNNNNNGG	8 cut(s)	74, 1342, 1718, 2105, 2277, 2831, 3230, 3869
BsmAI	GTCTC	2 cut(s)	2094, 3140
BsmFI	GGGAC	3 cut(s)	621, 1319, 3000
BsmI	GAATGC	9 cut(s)	384, 529, 1674, 1726, 1875, 2175, 2247, 2627, 3510
BsnI	GGCC	6 cut(s)	2109, 2263, 2281, 2530, 2951, 3229
BsoBI	CYCGRG	1 cut(s)	358
Bsp1286I	GDGCHC	2 cut(s)	217, 3674
Bsp1407I	TGTACA	1 cut(s)	46
Bsp19I	CCATGG	2 cut(s)	104, 3224
BspACI	CCGC	3 cut(s)	1239, 3842, 3858
BspANI	GGCC	6 cut(s)	2109, 2263, 2281, 2530, 2951, 3229
BspCNI	CTCAG	8 cut(s)	727, 990, 1180, 1592, 1963, 2311, 2392, 2532
BspDI	ATCGAT	1 cut(s)	2882
BspFNI	CGCG	1 cut(s)	3361
BspHI	TCATGA	3 cut(s)	1140, 3091, 3445
BspLI	GGNNCC	6 cut(s)	79, 591, 1083, 1410, 1772, 2481
BspMAI	CTGCAG	1 cut(s)	3468
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	8 cut(s)	255, 584, 597, 825, 1004, 1436, 2816, 3476
BspQI	GCTCTTC	1 cut(s)	2025
BspT107I	GGYRCC	2 cut(s)	77, 1408
BsrBI	CCGCTC	1 cut(s)	3860
BsrDI	GCAATG	5 cut(s)	90, 307, 408, 750, 3558
BsrGI	TGTACA	1 cut(s)	46
BsrI	ACTGG	9 cut(s)	649, 678, 996, 1337, 1498, 1754, 2346, 2878, 3843
BssNI	GRCGYC	1 cut(s)	2989
BssT1I	CCWWGG	5 cut(s)	104, 2531, 2628, 2982, 3224
Bst2UI	CCWGG	7 cut(s)	137, 351, 1086, 1570, 1718, 2477, 3231
Bst6I	CTCTTC	1 cut(s)	2025
BstACI	GRCGYC	1 cut(s)	2989
BstAPI	GCANNNNNTGC	1 cut(s)	2707
BstAUI	TGTACA	1 cut(s)	46
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	3 cut(s)	372, 384, 2756
BstDSI	CCRYGG	2 cut(s)	104, 3224
BstENI	CCTNNNNNAGG	2 cut(s)	2103, 2275
BstF5I	GGATG	8 cut(s)	683, 926, 1276, 1281, 3426, 3526, 3847, 3988
BstFNI	CGCG	1 cut(s)	3361
BstHHI	GCGC	2 cut(s)	1726, 3363
BstMAI	GTCTC	2 cut(s)	2094, 3140
BstNI	CCWGG	7 cut(s)	137, 351, 1086, 1570, 1718, 2477, 3231
BstNSI	RCATGY	3 cut(s)	1650, 2799, 3943
BstSCI	CCNGG	8 cut(s)	135, 272, 349, 1084, 1568, 1716, 2475, 3229
BstSFI	CTRYAG	6 cut(s)	850, 941, 1449, 2289, 3139, 3464
BstSNI	TACGTA	1 cut(s)	427
BstUI	CGCG	1 cut(s)	3361
BstV2I	GAAGAC	2 cut(s)	42, 2931
BstX2I	RGATCY	5 cut(s)	247, 589, 817, 1009, 2821
BstYI	RGATCY	5 cut(s)	247, 589, 817, 1009, 2821
Bsu15I	ATCGAT	1 cut(s)	2882
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	6 cut(s)	2109, 2263, 2281, 2530, 2951, 3229
BsuTUI	ATCGAT	1 cut(s)	2882
BtgI	CCRYGG	2 cut(s)	104, 3224
BtsCI	GGATG	8 cut(s)	683, 926, 1276, 1281, 3426, 3526, 3847, 3988
BtsI	GCAGTG	4 cut(s)	475, 3528, 3721, 3761
Cac8I	GCNNGC	3 cut(s)	372, 384, 2756
CaiI	CAGNNNCTG	2 cut(s)	1704, 2336
CciI	TCATGA	3 cut(s)	1140, 3091, 3445
CfoI	GCGC	2 cut(s)	1726, 3363
Cfr13I	GGNCC	3 cut(s)	734, 1675, 2294
ClaI	ATCGAT	1 cut(s)	2882
CseI	GACGC	1 cut(s)	3367
DrdI	GACNNNNNNGTC	2 cut(s)	95, 2301
DseDI	GACNNNNNNGTC	2 cut(s)	95, 2301
EaeI	YGGCCR	1 cut(s)	2949
Eam1104I	CTCTTC	1 cut(s)	2025
EarI	CTCTTC	1 cut(s)	2025
Eco105I	TACGTA	1 cut(s)	427
Eco130I	CCWWGG	5 cut(s)	104, 2531, 2628, 2982, 3224
Eco147I	AGGCCT	3 cut(s)	2109, 2281, 2530
Eco24I	GRGCYC	1 cut(s)	3674
Eco47I	GGWCC	3 cut(s)	734, 1675, 2294
Eco57I	CTGAAG	3 cut(s)	777, 2058, 3210
Eco88I	CYCGRG	1 cut(s)	358
EcoNI	CCTNNNNNAGG	2 cut(s)	2103, 2275
EcoO109I	RGGNCCY	1 cut(s)	2294
EcoRII	CCWGG	7 cut(s)	135, 349, 1084, 1568, 1716, 2475, 3229
EcoT14I	CCWWGG	5 cut(s)	104, 2531, 2628, 2982, 3224
EcoT22I	ATGCAT	2 cut(s)	1940, 3706
EcoT38I	GRGCYC	1 cut(s)	3674
ErhI	CCWWGG	5 cut(s)	104, 2531, 2628, 2982, 3224
FalI	AAGNNNNNCTT	6 cut(s)	324, 356, 2402, 2434, 2923, 2955
FaqI	GGGAC	3 cut(s)	621, 1319, 3000
FauI	CCCGC	1 cut(s)	1232
FbaI	TGATCA	3 cut(s)	1110, 1381, 3877
FblI	GTMKAC	3 cut(s)	429, 2374, 2659
FokI	GGATG	8 cut(s)	690, 933, 1283, 1288, 3413, 3533, 3834, 3995
FriOI	GRGCYC	1 cut(s)	3674
FspAI	RTGCGCAY	1 cut(s)	1725
FspI	TGCGCA	1 cut(s)	1725
GlaI	GCGC	2 cut(s)	1725, 3362
GsuI	CTGGAG	3 cut(s)	119, 483, 1737
HaeIII	GGCC	6 cut(s)	2109, 2263, 2281, 2530, 2951, 3229
HapII	CCGG	4 cut(s)	273, 1128, 1412, 3908
HgaI	GACGC	1 cut(s)	3367
HhaI	GCGC	2 cut(s)	1726, 3363
Hin1I	GRCGYC	1 cut(s)	2989
Hin6I	GCGC	2 cut(s)	1724, 3361
HinP1I	GCGC	2 cut(s)	1724, 3361
HincII	GTYRAC	4 cut(s)	2035, 2206, 2375, 3526
HindII	GTYRAC	4 cut(s)	2035, 2206, 2375, 3526
HindIII	AAGCTT	1 cut(s)	1591
HpaII	CCGG	4 cut(s)	273, 1128, 1412, 3908
Hpy99I	CGWCG	1 cut(s)	2454
HpyAV	CCTTC	8 cut(s)	950, 1229, 1510, 1758, 2082, 2099, 2271, 3661
HpyCH4IV	ACGT	3 cut(s)	426, 2989, 4027
HpySE526I	ACGT	3 cut(s)	426, 2989, 4027
Hsp92I	GRCGYC	1 cut(s)	2989
HspAI	GCGC	2 cut(s)	1724, 3361
Ksp22I	TGATCA	3 cut(s)	1110, 1381, 3877
LguI	GCTCTTC	1 cut(s)	2025
LmnI	GCTCC	4 cut(s)	567, 1477, 3865, 3958
MaeII	ACGT	3 cut(s)	426, 2989, 4027
MbiI	CCGCTC	1 cut(s)	3860
MfeI	CAATTG	1 cut(s)	2435
MflI	RGATCY	5 cut(s)	247, 589, 817, 1009, 2821
MhlI	GDGCHC	2 cut(s)	217, 3674
MlyI	GAGTC	7 cut(s)	543, 917, 1045, 2311, 2587, 2596, 3461
MmeI	TCCRAC	4 cut(s)	2432, 2881, 2905, 3892
Mph1103I	ATGCAT	2 cut(s)	1940, 3706
MroXI	GAANNNNTTC	1 cut(s)	1873
MslI	CAYNNNNRTG	6 cut(s)	222, 771, 1689, 1731, 1887, 3515
MspA1I	CMGCKG	1 cut(s)	3695
MspI	CCGG	4 cut(s)	273, 1128, 1412, 3908
MspR9I	CCNGG	8 cut(s)	137, 274, 351, 1086, 1570, 1718, 2477, 3231
MunI	CAATTG	1 cut(s)	2435
Mva1269I	GAATGC	9 cut(s)	384, 529, 1674, 1726, 1875, 2175, 2247, 2627, 3510
MvaI	CCWGG	7 cut(s)	137, 351, 1086, 1570, 1718, 2477, 3231
MvnI	CGCG	1 cut(s)	3361
NciI	CCSGG	1 cut(s)	274
NcoI	CCATGG	2 cut(s)	104, 3224
NheI	GCTAGC	1 cut(s)	382
NlaIV	GGNNCC	6 cut(s)	79, 591, 1083, 1410, 1772, 2481
NmuCI	GTSAC	8 cut(s)	325, 470, 1028, 1048, 1419, 1603, 2599, 4023
NsbI	TGCGCA	1 cut(s)	1725
NsiI	ATGCAT	2 cut(s)	1940, 3706
NspI	RCATGY	3 cut(s)	1650, 2799, 3943
OliI	CACNNNNGTG	1 cut(s)	1689
PaeR7I	CTCGAG	1 cut(s)	358
PagI	TCATGA	3 cut(s)	1140, 3091, 3445
PasI	CCCWGGG	1 cut(s)	1717
PceI	AGGCCT	3 cut(s)	2109, 2281, 2530
PciI	ACATGT	1 cut(s)	2795
PciSI	GCTCTTC	1 cut(s)	2025
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	9 cut(s)	384, 529, 1674, 1726, 1875, 2175, 2247, 2627, 3510
PdmI	GAANNNNTTC	1 cut(s)	1873
PfeI	GAWTC	9 cut(s)	117, 269, 364, 392, 1184, 1610, 1681, 2492, 3925
PflMI	CCANNNNNTGG	1 cut(s)	3230
PfoI	TCCNGGA	2 cut(s)	272, 349
PleI	GAGTC	7 cut(s)	542, 916, 1045, 2310, 2587, 2596, 3460
PpsI	GAGTC	7 cut(s)	542, 916, 1045, 2310, 2587, 2596, 3460
Ppu21I	YACGTR	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	2294
PscI	ACATGT	1 cut(s)	2795
PsiI	TTATAA	1 cut(s)	635
Psp5II	RGGWCCY	1 cut(s)	2294
Psp6I	CCWGG	7 cut(s)	135, 349, 1084, 1568, 1716, 2475, 3229
PspGI	CCWGG	7 cut(s)	135, 349, 1084, 1568, 1716, 2475, 3229
PspN4I	GGNNCC	6 cut(s)	79, 591, 1083, 1410, 1772, 2481
PspPI	GGNCC	3 cut(s)	734, 1675, 2294
PspPPI	RGGWCCY	1 cut(s)	2294
PspXI	VCTCGAGB	1 cut(s)	358
PsrI	GAACNNNNNNTAC	2 cut(s)	2463, 2495
PstI	CTGCAG	1 cut(s)	3468
PstNI	CAGNNNCTG	2 cut(s)	1704, 2336
PsuI	RGATCY	5 cut(s)	247, 589, 817, 1009, 2821
PvuII	CAGCTG	1 cut(s)	3695
RseI	CAYNNNNRTG	6 cut(s)	222, 771, 1689, 1731, 1887, 3515
SalI	GTCGAC	1 cut(s)	2373
SapI	GCTCTTC	1 cut(s)	2025
Sau96I	GGNCC	3 cut(s)	734, 1675, 2294
ScaI	AGTACT	1 cut(s)	744
SchI	GAGTC	7 cut(s)	543, 917, 1045, 2311, 2587, 2596, 3461
ScrFI	CCNGG	8 cut(s)	137, 274, 351, 1086, 1570, 1718, 2477, 3231
SduI	GDGCHC	2 cut(s)	217, 3674
SfcI	CTRYAG	6 cut(s)	850, 941, 1449, 2289, 3139, 3464
Sfr274I	CTCGAG	1 cut(s)	358
SinI	GGWCC	3 cut(s)	734, 1675, 2294
SlaI	CTCGAG	1 cut(s)	358
SmiMI	CAYNNNNRTG	6 cut(s)	222, 771, 1689, 1731, 1887, 3515
SmlI	CTYRAG	3 cut(s)	358, 2181, 4079
SmoI	CTYRAG	3 cut(s)	358, 2181, 4079
SnaBI	TACGTA	1 cut(s)	427
SpeI	ACTAGT	1 cut(s)	1255
SseBI	AGGCCT	3 cut(s)	2109, 2281, 2530
SsiI	CCGC	3 cut(s)	1239, 3842, 3858
SspI	AATATT	1 cut(s)	1136
StuI	AGGCCT	3 cut(s)	2109, 2281, 2530
StyD4I	CCNGG	8 cut(s)	135, 272, 349, 1084, 1568, 1716, 2475, 3229
StyI	CCWWGG	5 cut(s)	104, 2531, 2628, 2982, 3224
TaiI	ACGT	3 cut(s)	429, 2992, 4030
TaqI	TCGA	8 cut(s)	176, 359, 2275, 2374, 2591, 2619, 2882, 3205
TaqII	GACCGA	1 cut(s)	2223
TatI	WGTACW	4 cut(s)	46, 742, 2327, 3758
TfiI	GAWTC	9 cut(s)	117, 269, 364, 392, 1184, 1610, 1681, 2492, 3925
TseFI	GTSAC	8 cut(s)	325, 470, 1028, 1048, 1419, 1603, 2599, 4023
Tsp45I	GTSAC	8 cut(s)	325, 470, 1028, 1048, 1419, 1603, 2599, 4023
TspGWI	ACGGA	4 cut(s)	129, 644, 1311, 3474
Van91I	CCANNNNNTGG	1 cut(s)	3230
VpaK11BI	GGWCC	3 cut(s)	734, 1675, 2294
XagI	CCTNNNNNAGG	2 cut(s)	2103, 2275
XceI	RCATGY	3 cut(s)	1650, 2799, 3943
XhoI	CTCGAG	1 cut(s)	358
XmiI	GTMKAC	3 cut(s)	429, 2374, 2659
XmnI	GAANNNNTTC	1 cut(s)	1873
ZraI	GACGTC	1 cut(s)	2990
ZrmI	AGTACT	1 cut(s)	744
Zsp2I	ATGCAT	2 cut(s)	1940, 3706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.