Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0011450

Physical Location & Seq

Genomic Coordinates Forward (+)

23985778 .. 24174191

Gene Structure 188414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG250400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4086 bp

ATGCAAAGGAGAGTGGAAGAAATATTTCTTATATTCAAGAACTTGCATCATCTTCTGAACTCATTGCGCCCCCATCAGGAGAAATCAATAGAGTTGGTGATAATCGGTGAAGATGGGATCGTACAGTCTGTGTGTGAGCAGCCTGTGTTTGGCACCATTAAAGACATTGCCGTCCTACCTTGGAATGACGGATTCCGAACCCGAAACCGCCAGATGCCGGGCAAGGATCTTTTGGTCGTTGTTTCGGATTCCGGGAAGCTCTCGGTTCTATCTTTCTGCAATGAAATGCACAGGTTTTTTCCTGTGACACAAGTTCAACTTTCTAATCCTGGAAACTCGAGGAATCAGCTTGCAAGAATGCTGGCCATTGATTCAAGTGGCTGCTTCATTGCTGCTAGTGCATATGTAGACCGTTTGGCTATGTTCTCTGTTTCAATGTCTGGAGGCAGTGACATTATTGATAAGAAAATAGTGTATCCCCCTGAAAACGAAGTCAATGTGAATGCTGCTAGAGTCCAGAAAAACAGTATATCAGGTACTATATGGAGCATGAGCTTTATTTCACAGGATCCTAATCAAAGTAAGGGACATAATCCTATACTCGCCGTTGTTATGAATAGGACTGGGGCAGTCCGTAATGAATTGCTGTTACTGGGATGGAACATTAGAGAACAAGATGTTTATGTTATTTCTCAGTATGTAGAAGATGATGGACCCTTAGTACTTAGCATTGCTGAAGTTCCTCATTCGTATGGATTTGCTTTTCTGTTTAGGGAGGGTGATGCTATTTTAATGGATCTTAGAGATGCCAACAACCCTTATTGTATCTACAGAACAAGCCCAAATTTCTTATCCAATGTGGTTGATGAGGCAAATTTTGTTCAGGAGTCGTCTAAAGGATGTGATCTGTCTAGCGTACTACAGGTTGATGACGAAGGGGGTTTATTTAATGTAGCTGCCTGTGCGTTACTGGAACTGAGTGATTTAGATCCTATGTGTATAGATGGTGACAAATACAATGTGAATGTGACTCACAAATTTGTGTGTTCATGGAGTTGGGAACCAGGGAATGTTAAAAACCAAAGAATGATCATTTCTGCTGATACCGGAGAATATTTCATGATTGAAATTTTTTTCAACCCTGATGGCGTTAAGGTTCAAGAATCTGAGTGTCTTTACAAAGGTTTACCATGCAAGGCAATTTTGTGGGTTGACGGCGGGTTTCTGGCTGCACTAGTAGATATGGGGGATGGGATGGTCTTGAAAATGGAAAACGGAACACTTAATTACAGAAGTCCTATTCAAACCATTGTCCCAGTCTTGGATATGTCAGTTGTGGATTACCATGATGAGAAACATGATCAAATGTTTGCTTGTTGTGGAGTGGCACCGGAGGGGTCACTAAGGATCATTAGAAGTGGTATCACTGTAGAAAAGCTACTAAGGACTGCTCCTATATATCAAGGGATTACTGGCACTTGGACATTACGAATGAAGGTGAGTGATACTTACCATTCATTTCTTGTGCTATCATTTGTTGAGGAAACCAGGGTACTCTCAGTTGGTTTAAGCTTTACTGATGTGACTGATTCAGTTGGTTTCCAGCCTGATGTTTCTACTTTGGCATGTGGTGTTGTAAATGATGGAATGCTGGTCCAGATTCACAGAAGTGCAGTCAGGCTCTGTCTGCCCACCCAGGGTGCGCATTCTGATGGTGTTCCTTTGCCTTCTCCAGTTTGTACCTCTTGGTTCCCAGAAAATTTGAGCATCAGTTTGGGTGCTGTTGGGCATAATCTAATTGTTGTTTCTTCATCTAATCCCTGCTTTATATTCATACTTGGGGTCAGAATGCTTTCAGTGCATCATTATGAGATATATGAGATGCAACATTTGAGATTGCAAAATGAATTATCATGCATCTCCATTCCTCAGAACCGTTACGAGAAAAAAGATACAAGTTTTTCAAATAGTCTGGTAGATGAGAGTTCTGCCCCTGCTCTTCCATTTGGAGTTGACATCAGTAATATCTTTGTTATTGGAACACACAAGCCTTCGGTGGAAATCTTGTCTCTTGTACCTAGTGAAGGCCTACGAGTTCTTGCTTCTGGGGCAATTTCATTAACAAATACTTTTGGTACTGCTATTAGTGGCTGCATTCCTCAAGATGTAAGGCTTGTATTAGTTGACCGATTATATGTCCTTTCTGGATTGAGGAATGGAATGCTGCTTCGGTTTGAATGGCCTACTTCCTCTCGAAGGCCTTTATCTGTAGGACCTCAGAGTCCTGTTGATTGGCTTTCAGTTAGTACCGATACTGTTTTATCCAGTGTATCAGCAGCAAATTCTTTTGGTCGACATATGTATACTACTAAGTTATCTGAGAATATAAAGGACAACTTTCCTGTTGATTTGCAATTGATTGCTACCCGTCGGATTGGCATCACTCCTGTATTCCTGGTTCCTTTAAGTGATTCCCTTGATGGTGATGTAGTTGTTCTCAGTGATAGGCCTTGGTTGCTGCATACTGCAAGGCACAGCCTCTCATATACTTCTATCTCATTTCAATCTTCGACTCATGTGACTCCTGTATGTTATGTCGAATGCCCCAAGGGAATTTTATTTGTTGCAGAGAACTGTCTACATTTGGTAGAGATGTTGCACAGTAAGAGGCTTAATGTGCAGAAGTTGCATCTTGGAGGCACTCCGAGGAGGGTCTTTTATCATAGTGAAAGCAGGCTATTGCTTGTGATGAGGACTAATTTGAGTGATGATACATGTTCATCTGATATATGTTGCGTAGATCCTCTTAGTGGGTCGGTGCTGTCATCTTTCAAACTTGAATTTGGTGAAACTGGAAAATCGATGGAGTTAATGAGGGTTGGAAGTGAACAGGTTATTTTGGTTGGAACAAGTTTGTCTTCTGGGTCGGCCATAATGCCCTGTGGTGAGGCTGAAAGTACCAAGGGACGTCTTATTGTTCTCTGTCTTGAAAATATGCAAAATTCAGACAGTGGTTCAATGACATTCGGCTCAAAGGCAGGGTCATCTTCTCAACGAGCTTCCCCATTTCATGAAATTGTTGGGTATGCCACAGAACAGCTTTCAAGTAGTAGTCTCTGTAGTAGCCCAGATGATACTAGCTGTGATGGTATGAAACTTGAAGAAACTGAAGCGTGGCAGTTTCGATTAGCTTTTTCAATGCCATGGCCTGGAATGGTACTTGCAATCTGCCCTTATCTTGATCGTTACTTCTTGGCTTCTGCTGGTAATGCTTTTTATTTATGTGGTTTTCCACATGACAATTCCCAAAGAGTAAAAAAGTGGGCTGTGGCGAGGACGCGCTTTACAATTACATCTTTGACTGCATATTTCACTAGAATTGTTGTTGGTGATTGTCGTGATGGCATCCTTTTCTATGATTATCATGAGGAGTCCAAAAAGCTGCAGCAACTTTACTGTGATCCGTATCAGAGATTAGTTGGTGATTGCATTCTTATGGATGTCAACACTGCTGTTGTTTCAGATCGTAAGGGAAGCATTGCTGTCCTTTCATGTGCAGATTATTTAGAAGATACTGCAAGTCCAGAATGTAATTTAACAGTGAGCTGTGCTTATTATATGGGTGAGGTAGCTATGAGCATCAAGAAGGGCTCATTTTCATATAAACTTCCAGCTGATGATGCATTGAAAGGCAGTGATGGAAGTATTGACTTCTCTCAAAACGGTATCATTGTGAGTACACTGCTAGGAAGCATAATAACTTTCGTTCCAATATCAAGGGAAGAATATGAACTCTTAGAAGCTGTCCAAGATAGACTGGCGGTACATCCATTAACCGCTCCTATTCTCGGAAATGATCATAATGAGTTTCGTAGCCGTGAAAATCCGGTTGGAGTACCCAAGATTCTTGATGCTGACATGCTCACTCAATTCTTGGAGCTTACAAGTATGCAACAAGAGGATGTATTATCATCACCTCTTTGTGTACAAGGCACAGTAAAGTCACGTTTGAAATTGCGAAGTTCACCTGTTCCTGTCAATCAGGTTGTGCAACTCCTTGAGCGAGTTCACTATGCCCTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010498 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031461 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051603 GO:0051716 GO:0061458 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1361

Amino Acids

150.14

Weight (kDa)

5.28

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	26 - 436	4.1e-37	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	488 - 884	4e-30	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	1059 - 1312	2.6e-29	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11960 AT3G11960 AT3G11960 AT3G11960
fragaria_vesca	FvH4_6g21460 FvH4_6g21460 FvH4_6g21460
malus_domestica	MD14G1049600.v1.1
prunus_persica	Prupe.7G085900_v2.0.a1
pyrus_communis	pycom14g04060
rosa_chinensis	RchiOBHm_Chr3g0478641
rosa_laevigata	RLG00000023638
rosa_multiflora	Rmu_sc0005420.1_g000008
rosa_roxburghii	Rroxscaffold_6G00403250
rosa_rugosa	Rorug03G0166800
rosa_samantha	Rh3AG218800 Rh3BG250400 Rh3CG247300 Rh3DG243600
rosa_wichuraiana	Rw3G019670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	170, 2280
AatII	GACGTC	1 cut(s)	2971
Acc16I	TGCGCA	1 cut(s)	1704
AccB1I	GGYRCC	2 cut(s)	152, 1387
AccB7I	CCANNNNNTGG	1 cut(s)	3209
AccBSI	CCGCTC	1 cut(s)	3839
AccI	GTMKAC	4 cut(s)	408, 2353, 2363, 2638
AccII	CGCG	1 cut(s)	3340
AciI	CCGC	4 cut(s)	208, 1218, 3821, 3837
AclWI	GGATC	9 cut(s)	125, 234, 563, 576, 804, 983, 1415, 2795, 3455
AcoI	YGGCCR	2 cut(s)	363, 2928
AcsI	RAATTY	9 cut(s)	844, 874, 1037, 1128, 1759, 2341, 2613, 2840, 3001
AcuI	CTGAAG	2 cut(s)	756, 3189
AcyI	GRCGYC	1 cut(s)	2968
AflIII	ACRYGT	1 cut(s)	2774
AhlI	ACTAGT	1 cut(s)	1234
AjnI	CCWGG	6 cut(s)	328, 1063, 1547, 1695, 2454, 3208
AjuI	GAANNNNNNNTTGG	2 cut(s)	3873, 3905
AleI	CACNNNNGTG	1 cut(s)	1668
Alw26I	GTCTC	2 cut(s)	2073, 3119
AlwI	GGATC	9 cut(s)	125, 234, 563, 576, 804, 983, 1415, 2795, 3455
AlwNI	CAGNNNCTG	1 cut(s)	1683
Ama87I	CYCGRG	1 cut(s)	337
AoxI	GGCC	7 cut(s)	363, 2086, 2240, 2258, 2507, 2928, 3206
ApoI	RAATTY	9 cut(s)	844, 874, 1037, 1128, 1759, 2341, 2613, 2840, 3001
ArsI	GACNNNNNNTTYG	2 cut(s)	3026, 3058
Asp700I	GAANNNNTTC	2 cut(s)	24, 1852
AspLEI	GCGC	3 cut(s)	69, 1705, 3342
AspS9I	GGNCC	3 cut(s)	713, 1654, 2273
AsuC2I	CCSGG	2 cut(s)	219, 253
AvaI	CYCGRG	1 cut(s)	337
AvaII	GGWCC	3 cut(s)	713, 1654, 2273
BalI	TGGCCA	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	568
BanI	GGYRCC	2 cut(s)	152, 1387
BanII	GRGCYC	1 cut(s)	3653
BbsI	GAAGAC	1 cut(s)	2910
BceAI	ACGGC	4 cut(s)	155, 590, 1231, 3861
BciT130I	CCWGG	6 cut(s)	330, 1065, 1549, 1697, 2456, 3210
BciVI	GTATCC	1 cut(s)	486
BclI	TGATCA	3 cut(s)	1089, 1360, 3856
BcnI	CCSGG	2 cut(s)	219, 253
BcoDI	GTCTC	2 cut(s)	2073, 3119
BcuI	ACTAGT	1 cut(s)	1234
BfaI	CTAG	8 cut(s)	396, 510, 912, 1235, 2079, 3138, 3375, 3746
BfmI	CTRYAG	6 cut(s)	829, 920, 1428, 2268, 3118, 3443
BfuI	GTATCC	1 cut(s)	486
BmcAI	AGTACT	1 cut(s)	723
Bme1390I	CCNGG	8 cut(s)	219, 253, 330, 1065, 1549, 1697, 2456, 3210
Bme18I	GGWCC	3 cut(s)	713, 1654, 2273
BmeT110I	CYCGRG	1 cut(s)	337
BmgT120I	GGNCC	3 cut(s)	713, 1654, 2273
BmiI	GGNNCC	7 cut(s)	154, 570, 715, 1062, 1389, 1751, 2460
BmrFI	CCNGG	8 cut(s)	219, 253, 330, 1065, 1549, 1697, 2456, 3210
BmrI	ACTGGG	3 cut(s)	633, 662, 1310
BmuI	ACTGGG	3 cut(s)	633, 662, 1310
BpiI	GAAGAC	1 cut(s)	2910
BpmI	CTGGAG	2 cut(s)	462, 1716
BpuEI	CTTGAG	2 cut(s)	2145, 4079
BpuMI	CCSGG	2 cut(s)	219, 253
Bsa29I	ATCGAT	1 cut(s)	2861
BsaBI	GATNNNNATC	4 cut(s)	573, 987, 2438, 3465
BsaHI	GRCGYC	1 cut(s)	2968
BsaWI	WCCGGW	3 cut(s)	1106, 1390, 3886
Bse1I	ACTGG	9 cut(s)	628, 657, 975, 1316, 1477, 1733, 2325, 2857, 3822
Bse3DI	GCAATG	6 cut(s)	62, 165, 286, 387, 729, 3537
Bse8I	GATNNNNATC	4 cut(s)	573, 987, 2438, 3465
BseBI	CCWGG	6 cut(s)	330, 1065, 1549, 1697, 2456, 3210
BseCI	ATCGAT	1 cut(s)	2861
BseGI	GGATG	8 cut(s)	662, 905, 1255, 1260, 3405, 3505, 3826, 3967
BseJI	GATNNNNATC	4 cut(s)	573, 987, 2438, 3465
BseMI	GCAATG	6 cut(s)	62, 165, 286, 387, 729, 3537
BseMII	CTCAG	8 cut(s)	707, 968, 1158, 1572, 1943, 2291, 2370, 2512
BseNI	ACTGG	9 cut(s)	628, 657, 975, 1316, 1477, 1733, 2325, 2857, 3822
BseRI	GAGGAG	2 cut(s)	2722, 3443
BsgI	GTGCAG	4 cut(s)	1215, 1692, 2699, 3576
Bsh1236I	CGCG	1 cut(s)	3340
BshFI	GGCC	7 cut(s)	365, 2088, 2242, 2260, 2509, 2930, 3208
BshNI	GGYRCC	2 cut(s)	152, 1387
BshVI	ATCGAT	1 cut(s)	2861
BsiHKCI	CYCGRG	1 cut(s)	337
BsiSI	CCGG	5 cut(s)	218, 252, 1107, 1391, 3887
BslFI	GGGAC	3 cut(s)	600, 1298, 2979
BsmAI	GTCTC	2 cut(s)	2073, 3119
BsmFI	GGGAC	3 cut(s)	600, 1298, 2979
BsmI	GAATGC	9 cut(s)	363, 508, 1653, 1705, 1854, 2154, 2226, 2606, 3489
BsnI	GGCC	7 cut(s)	365, 2088, 2242, 2260, 2509, 2930, 3208
BsoBI	CYCGRG	1 cut(s)	337
Bsp1286I	GDGCHC	1 cut(s)	3653
Bsp1407I	TGTACA	1 cut(s)	3985
Bsp19I	CCATGG	1 cut(s)	3203
BspACI	CCGC	4 cut(s)	208, 1218, 3821, 3837
BspANI	GGCC	7 cut(s)	365, 2088, 2242, 2260, 2509, 2930, 3208
BspCNI	CTCAG	8 cut(s)	706, 969, 1159, 1571, 1942, 2290, 2371, 2511
BspDI	ATCGAT	1 cut(s)	2861
BspFNI	CGCG	1 cut(s)	3340
BspHI	TCATGA	3 cut(s)	1119, 3070, 3424
BspLI	GGNNCC	7 cut(s)	154, 570, 715, 1062, 1389, 1751, 2460
BspMAI	CTGCAG	1 cut(s)	3447
BspPI	GGATC	9 cut(s)	125, 234, 563, 576, 804, 983, 1415, 2795, 3455
BspQI	GCTCTTC	1 cut(s)	2004
BspT107I	GGYRCC	2 cut(s)	152, 1387
BsrBI	CCGCTC	1 cut(s)	3839
BsrDI	GCAATG	6 cut(s)	62, 165, 286, 387, 729, 3537
BsrGI	TGTACA	1 cut(s)	3985
BsrI	ACTGG	9 cut(s)	628, 657, 975, 1316, 1477, 1733, 2325, 2857, 3822
BssNAI	GTATAC	1 cut(s)	2364
BssNI	GRCGYC	1 cut(s)	2968
BssT1I	CCWWGG	5 cut(s)	179, 2510, 2607, 2961, 3203
Bst1107I	GTATAC	1 cut(s)	2364
Bst2UI	CCWGG	6 cut(s)	330, 1065, 1549, 1697, 2456, 3210
Bst6I	CTCTTC	1 cut(s)	2004
BstACI	GRCGYC	1 cut(s)	2968
BstAPI	GCANNNNNTGC	1 cut(s)	2686
BstAUI	TGTACA	1 cut(s)	3985
BstC8I	GCNNGC	3 cut(s)	351, 363, 2735
BstDSI	CCRYGG	1 cut(s)	3203
BstENI	CCTNNNNNAGG	2 cut(s)	2082, 2254
BstF5I	GGATG	8 cut(s)	662, 905, 1255, 1260, 3405, 3505, 3826, 3967
BstFNI	CGCG	1 cut(s)	3340
BstHHI	GCGC	3 cut(s)	69, 1705, 3342
BstMAI	GTCTC	2 cut(s)	2073, 3119
BstNI	CCWGG	6 cut(s)	330, 1065, 1549, 1697, 2456, 3210
BstNSI	RCATGY	3 cut(s)	1629, 2778, 3922
BstSCI	CCNGG	8 cut(s)	217, 251, 328, 1063, 1547, 1695, 2454, 3208
BstSFI	CTRYAG	6 cut(s)	829, 920, 1428, 2268, 3118, 3443
BstUI	CGCG	1 cut(s)	3340
BstV2I	GAAGAC	1 cut(s)	2910
BstX2I	RGATCY	5 cut(s)	226, 568, 796, 988, 2800
BstYI	RGATCY	5 cut(s)	226, 568, 796, 988, 2800
BstZ17I	GTATAC	1 cut(s)	2364
Bsu15I	ATCGAT	1 cut(s)	2861
BsuI	GTATCC	1 cut(s)	486
BsuRI	GGCC	7 cut(s)	365, 2088, 2242, 2260, 2509, 2930, 3208
BsuTUI	ATCGAT	1 cut(s)	2861
BtgI	CCRYGG	1 cut(s)	3203
BtsCI	GGATG	8 cut(s)	662, 905, 1255, 1260, 3405, 3505, 3826, 3967
BtsI	GCAGTG	4 cut(s)	454, 3507, 3700, 3740
Cac8I	GCNNGC	3 cut(s)	351, 363, 2735
CaiI	CAGNNNCTG	1 cut(s)	1683
CciI	TCATGA	3 cut(s)	1119, 3070, 3424
CfoI	GCGC	3 cut(s)	69, 1705, 3342
Cfr13I	GGNCC	3 cut(s)	713, 1654, 2273
ClaI	ATCGAT	1 cut(s)	2861
CseI	GACGC	1 cut(s)	3346
DrdI	GACNNNNNNGTC	2 cut(s)	170, 2280
DseDI	GACNNNNNNGTC	2 cut(s)	170, 2280
EaeI	YGGCCR	2 cut(s)	363, 2928
Eam1104I	CTCTTC	1 cut(s)	2004
EarI	CTCTTC	1 cut(s)	2004
Eco130I	CCWWGG	5 cut(s)	179, 2510, 2607, 2961, 3203
Eco147I	AGGCCT	3 cut(s)	2088, 2260, 2509
Eco24I	GRGCYC	1 cut(s)	3653
Eco47I	GGWCC	3 cut(s)	713, 1654, 2273
Eco57I	CTGAAG	2 cut(s)	756, 3189
Eco88I	CYCGRG	1 cut(s)	337
EcoNI	CCTNNNNNAGG	2 cut(s)	2082, 2254
EcoO109I	RGGNCCY	1 cut(s)	2273
EcoRII	CCWGG	6 cut(s)	328, 1063, 1547, 1695, 2454, 3208
EcoT14I	CCWWGG	5 cut(s)	179, 2510, 2607, 2961, 3203
EcoT22I	ATGCAT	2 cut(s)	1919, 3685
EcoT38I	GRGCYC	1 cut(s)	3653
ErhI	CCWWGG	5 cut(s)	179, 2510, 2607, 2961, 3203
FalI	AAGNNNNNCTT	6 cut(s)	303, 335, 2381, 2413, 2902, 2934
FaqI	GGGAC	3 cut(s)	600, 1298, 2979
FauI	CCCGC	1 cut(s)	1211
FauNDI	CATATG	2 cut(s)	403, 2358
FbaI	TGATCA	3 cut(s)	1089, 1360, 3856
FblI	GTMKAC	4 cut(s)	408, 2353, 2363, 2638
FokI	GGATG	8 cut(s)	669, 912, 1262, 1267, 3392, 3512, 3813, 3974
FriOI	GRGCYC	1 cut(s)	3653
FspAI	RTGCGCAY	1 cut(s)	1704
FspBI	CTAG	8 cut(s)	396, 510, 912, 1235, 2079, 3138, 3375, 3746
FspI	TGCGCA	1 cut(s)	1704
GlaI	GCGC	3 cut(s)	68, 1704, 3341
GsuI	CTGGAG	2 cut(s)	462, 1716
HaeIII	GGCC	7 cut(s)	365, 2088, 2242, 2260, 2509, 2930, 3208
HapII	CCGG	5 cut(s)	218, 252, 1107, 1391, 3887
HgaI	GACGC	1 cut(s)	3346
HhaI	GCGC	3 cut(s)	69, 1705, 3342
Hin1I	GRCGYC	1 cut(s)	2968
Hin6I	GCGC	3 cut(s)	67, 1703, 3340
HinP1I	GCGC	3 cut(s)	67, 1703, 3340
HincII	GTYRAC	5 cut(s)	1213, 2014, 2185, 2354, 3505
HindII	GTYRAC	5 cut(s)	1213, 2014, 2185, 2354, 3505
HindIII	AAGCTT	1 cut(s)	1570
HpaII	CCGG	5 cut(s)	218, 252, 1107, 1391, 3887
Hpy99I	CGWCG	1 cut(s)	2433
HpyAV	CCTTC	7 cut(s)	929, 1489, 1737, 2061, 2078, 2250, 3640
HpyCH4IV	ACGT	2 cut(s)	2968, 4006
HpySE526I	ACGT	2 cut(s)	2968, 4006
Hsp92I	GRCGYC	1 cut(s)	2968
HspAI	GCGC	3 cut(s)	67, 1703, 3340
Ksp22I	TGATCA	3 cut(s)	1089, 1360, 3856
LguI	GCTCTTC	1 cut(s)	2004
LmnI	GCTCC	4 cut(s)	546, 1456, 3844, 3937
MaeI	CTAG	8 cut(s)	396, 510, 912, 1235, 2079, 3138, 3375, 3746
MaeII	ACGT	2 cut(s)	2968, 4006
MbiI	CCGCTC	1 cut(s)	3839
MfeI	CAATTG	1 cut(s)	2414
MflI	RGATCY	5 cut(s)	226, 568, 796, 988, 2800
MhlI	GDGCHC	1 cut(s)	3653
MlsI	TGGCCA	1 cut(s)	365
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	7 cut(s)	522, 896, 1024, 2290, 2566, 2575, 3440
MmeI	TCCRAC	4 cut(s)	2411, 2860, 2884, 3871
Mox20I	TGGCCA	1 cut(s)	365
Mph1103I	ATGCAT	2 cut(s)	1919, 3685
MroXI	GAANNNNTTC	2 cut(s)	24, 1852
MscI	TGGCCA	1 cut(s)	365
MslI	CAYNNNNRTG	5 cut(s)	750, 1668, 1710, 1866, 3494
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	3674
MspI	CCGG	5 cut(s)	218, 252, 1107, 1391, 3887
MspR9I	CCNGG	8 cut(s)	219, 253, 330, 1065, 1549, 1697, 2456, 3210
MunI	CAATTG	1 cut(s)	2414
Mva1269I	GAATGC	9 cut(s)	363, 508, 1653, 1705, 1854, 2154, 2226, 2606, 3489
MvaI	CCWGG	6 cut(s)	330, 1065, 1549, 1697, 2456, 3210
MvnI	CGCG	1 cut(s)	3340
NciI	CCSGG	2 cut(s)	219, 253
NcoI	CCATGG	1 cut(s)	3203
NdeI	CATATG	2 cut(s)	403, 2358
NlaIV	GGNNCC	7 cut(s)	154, 570, 715, 1062, 1389, 1751, 2460
NmuCI	GTSAC	8 cut(s)	304, 449, 1007, 1027, 1398, 1582, 2578, 4002
NsbI	TGCGCA	1 cut(s)	1704
NsiI	ATGCAT	2 cut(s)	1919, 3685
NspI	RCATGY	3 cut(s)	1629, 2778, 3922
OliI	CACNNNNGTG	1 cut(s)	1668
PaeR7I	CTCGAG	1 cut(s)	337
PagI	TCATGA	3 cut(s)	1119, 3070, 3424
PasI	CCCWGGG	1 cut(s)	1696
PceI	AGGCCT	3 cut(s)	2088, 2260, 2509
PciI	ACATGT	1 cut(s)	2774
PciSI	GCTCTTC	1 cut(s)	2004
PctI	GAATGC	9 cut(s)	363, 508, 1653, 1705, 1854, 2154, 2226, 2606, 3489
PdmI	GAANNNNTTC	2 cut(s)	24, 1852
PfeI	GAWTC	9 cut(s)	192, 248, 343, 371, 1163, 1589, 1660, 2471, 3904
PflMI	CCANNNNNTGG	1 cut(s)	3209
PfoI	TCCNGGA	2 cut(s)	251, 328
PleI	GAGTC	7 cut(s)	521, 895, 1024, 2289, 2566, 2575, 3439
PpsI	GAGTC	7 cut(s)	521, 895, 1024, 2289, 2566, 2575, 3439
PpuMI	RGGWCCY	1 cut(s)	2273
PscI	ACATGT	1 cut(s)	2774
Psp5II	RGGWCCY	1 cut(s)	2273
Psp6I	CCWGG	6 cut(s)	328, 1063, 1547, 1695, 2454, 3208
PspGI	CCWGG	6 cut(s)	328, 1063, 1547, 1695, 2454, 3208
PspN4I	GGNNCC	7 cut(s)	154, 570, 715, 1062, 1389, 1751, 2460
PspPI	GGNCC	3 cut(s)	713, 1654, 2273
PspPPI	RGGWCCY	1 cut(s)	2273
PspXI	VCTCGAGB	1 cut(s)	337
PsrI	GAACNNNNNNTAC	2 cut(s)	2442, 2474
PstI	CTGCAG	1 cut(s)	3447
PstNI	CAGNNNCTG	1 cut(s)	1683
PsuI	RGATCY	5 cut(s)	226, 568, 796, 988, 2800
PvuII	CAGCTG	1 cut(s)	3674
RseI	CAYNNNNRTG	5 cut(s)	750, 1668, 1710, 1866, 3494
SalI	GTCGAC	1 cut(s)	2352
SapI	GCTCTTC	1 cut(s)	2004
Sau96I	GGNCC	3 cut(s)	713, 1654, 2273
ScaI	AGTACT	1 cut(s)	723
SchI	GAGTC	7 cut(s)	522, 896, 1024, 2290, 2566, 2575, 3440
ScrFI	CCNGG	8 cut(s)	219, 253, 330, 1065, 1549, 1697, 2456, 3210
SduI	GDGCHC	1 cut(s)	3653
SfcI	CTRYAG	6 cut(s)	829, 920, 1428, 2268, 3118, 3443
Sfr274I	CTCGAG	1 cut(s)	337
SinI	GGWCC	3 cut(s)	713, 1654, 2273
SlaI	CTCGAG	1 cut(s)	337
SmiMI	CAYNNNNRTG	5 cut(s)	750, 1668, 1710, 1866, 3494
SmlI	CTYRAG	3 cut(s)	337, 2160, 4058
SmoI	CTYRAG	3 cut(s)	337, 2160, 4058
SpeI	ACTAGT	1 cut(s)	1234
SseBI	AGGCCT	3 cut(s)	2088, 2260, 2509
SsiI	CCGC	4 cut(s)	208, 1218, 3821, 3837
SspI	AATATT	2 cut(s)	24, 1115
SspMI	CTAG	8 cut(s)	396, 510, 912, 1235, 2079, 3138, 3375, 3746
StuI	AGGCCT	3 cut(s)	2088, 2260, 2509
StyD4I	CCNGG	8 cut(s)	217, 251, 328, 1063, 1547, 1695, 2454, 3208
StyI	CCWWGG	5 cut(s)	179, 2510, 2607, 2961, 3203
TaiI	ACGT	2 cut(s)	2971, 4009
TaqI	TCGA	7 cut(s)	338, 2254, 2353, 2570, 2598, 2861, 3184
TaqII	GACCGA	1 cut(s)	2202
TatI	WGTACW	3 cut(s)	721, 3737, 3985
TfiI	GAWTC	9 cut(s)	192, 248, 343, 371, 1163, 1589, 1660, 2471, 3904
TseFI	GTSAC	8 cut(s)	304, 449, 1007, 1027, 1398, 1582, 2578, 4002
Tsp45I	GTSAC	8 cut(s)	304, 449, 1007, 1027, 1398, 1582, 2578, 4002
TspGWI	ACGGA	4 cut(s)	204, 623, 1290, 3453
Van91I	CCANNNNNTGG	1 cut(s)	3209
VpaK11BI	GGWCC	3 cut(s)	713, 1654, 2273
XagI	CCTNNNNNAGG	2 cut(s)	2082, 2254
XapI	RAATTY	9 cut(s)	844, 874, 1037, 1128, 1759, 2341, 2613, 2840, 3001
XceI	RCATGY	3 cut(s)	1629, 2778, 3922
XhoI	CTCGAG	1 cut(s)	337
XmiI	GTMKAC	4 cut(s)	408, 2353, 2363, 2638
XmnI	GAANNNNTTC	2 cut(s)	24, 1852
XspI	CTAG	8 cut(s)	396, 510, 912, 1235, 2079, 3138, 3375, 3746
ZraI	GACGTC	1 cut(s)	2969
ZrmI	AGTACT	1 cut(s)	723
Zsp2I	ATGCAT	2 cut(s)	1919, 3685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.