RLG00000023864

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018990
Physical Location & Seq
Reverse (-)
29311939 .. 29313292
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023864

Sequence Viewer

Length: 699 bp
ATGAAGAACAGTCGGAGCAGCGGGGATCGTCGCCGGTGTCGGCGACAAGGAGGAGGCTCTGATGTCCAGCGCAACCAACTGGGAGACCGTGCTGATTTAGTGATTTTTTTCACCATTGGCATCATTGTTGCATGTGATGTTGGAGAGGATTTCCTGTATGATAGTTATGGTCAAATTGATGATTGGGAGAATTGGGTGCAGGTCGGTCTTCGGCTGCTGCTCTGTCTTCTTGGTTCTAACATTGTTATTCGAACAGCGTGTTGTTCTGTGGGGATTGTTGTACCAGTATACTGTACATGCAAGGCAATTGAGAGGAAAGATGAAACTGCACAACAGAAGTGGCTTCTTTATTGGGCGGGTTGGGATTTGTATTTTTTATTTTTGTTTAATTTCCTTTCATCTCGAACAGAAGCAGCCTTGATGGTGGCGGTGGCGGTGGCCGTGCGTTCATCGACAGCTTGGAAATTGAATTGCAAAGGTTATGGGGTGAGGCAAGAGGCTGCGGTGGCATACGGTGCTCTTTGTGCTGTGGTTTGTTCAATTCCTATAACTTCAAATGGAAGACAGAACCATGTTATGCTTGGGAGCTTGGTTTACCGGTTCGTTGGTTGGGCGTTGCCGTTGCTTAGCAATTTCACCGTGATTAGATTGATCGAGTTATCGAATTGTATTGGCTTGTATTGTACTATTGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

233

Amino Acids

25.88

Weight (kDa)

8.25

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018990)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0487951 RchiOBHm_Chr4g0405781
rosa_laevigata RLG00000023864 RLG00000029465
rosa_multiflora Rmu_co8308653.1_g000001
rosa_roxburghii Rroxscaffold_2G00144510 Rroxscaffold_4G00315700 Rroxscaffold_5G00346300
rosa_samantha Rh3CG336800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 288
AciI CCGC 5 cut(s) 21, 356, 428, 434, 503
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 438
AfaI GTAC 3 cut(s) 282, 295, 685
AgeI ACCGGT 1 cut(s) 597
AgsI TTSAA 3 cut(s) 469, 540, 555
AluBI AGCT 2 cut(s) 458, 588
AluI AGCT 2 cut(s) 458, 588
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 33
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 5 cut(s) 18, 214, 217, 413, 500
AsiGI ACCGGT 1 cut(s) 597
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 103, 499, 628
AsuII TTCGAA 1 cut(s) 250
BbsI GAAGAC 3 cut(s) 200, 218, 568
Bbv12I GWGCWC 1 cut(s) 520
BbvI GCAGC 5 cut(s) 30, 201, 204, 425, 487
BccI CCATC 1 cut(s) 415
BceAI ACGGC 2 cut(s) 425, 604
BcoDI GTCTC 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 190
BisI GCNGC 5 cut(s) 19, 215, 218, 414, 501
BlpI GCTNAGC 1 cut(s) 626
BlsI GCNGC 5 cut(s) 20, 216, 219, 415, 502
BmrI ACTGGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 89
BpiI GAAGAC 3 cut(s) 200, 218, 568
Bpu1102I GCTNAGC 1 cut(s) 626
Bpu14I TTCGAA 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 597
Bse118I RCCGGY 2 cut(s) 33, 597
Bse1I ACTGG 2 cut(s) 84, 284
BseNI ACTGG 2 cut(s) 84, 284
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 5 cut(s) 30, 201, 204, 425, 487
BsgI GTGCAG 2 cut(s) 218, 312
BshFI GGCC 1 cut(s) 440
BshTI ACCGGT 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 520
BsiSI CCGG 2 cut(s) 34, 598
BsmAI GTCTC 1 cut(s) 78
BsnI GGCC 1 cut(s) 440
Bso31I GGTCTC 1 cut(s) 78
Bsp119I TTCGAA 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 293
Bsp143I GATC 2 cut(s) 25, 651
Bsp1720I GCTNAGC 1 cut(s) 626
BspACI CCGC 5 cut(s) 21, 356, 428, 434, 503
BspANI GGCC 1 cut(s) 440
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 78
BsrFI RCCGGY 2 cut(s) 33, 597
BsrGI TGTACA 1 cut(s) 293
BsrI ACTGG 2 cut(s) 84, 284
BssAI RCCGGY 2 cut(s) 33, 597
BssMI GATC 2 cut(s) 25, 651
BssNAI GTATAC 1 cut(s) 289
Bst1107I GTATAC 1 cut(s) 289
Bst4CI ACNGT 5 cut(s) 11, 89, 293, 515, 640
BstAPI GCANNNNNTGC 1 cut(s) 515
BstAUI TGTACA 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 626
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 2 cut(s) 28, 654
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 2 cut(s) 25, 651
BstMWI GCNNNNNNNGC 3 cut(s) 506, 515, 524
BstNSI RCATGY 2 cut(s) 135, 300
BstV1I GCAGC 5 cut(s) 30, 201, 204, 425, 487
BstV2I GAAGAC 3 cut(s) 200, 218, 568
BstZ17I GTATAC 1 cut(s) 289
BsuRI GGCC 1 cut(s) 440
BveI ACCTGC 1 cut(s) 190
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 2 cut(s) 33, 597
Csp6I GTAC 3 cut(s) 281, 294, 684
CspAI ACCGGT 1 cut(s) 597
CspCI CAANNNNNGTGG 2 cut(s) 320, 355
CviAII CATG 3 cut(s) 132, 297, 572
CviJI RGCY 9 cut(s) 57, 214, 343, 416, 440, 458, 500, 588, 675
CviKI_1 RGCY 9 cut(s) 57, 214, 343, 416, 440, 458, 500, 588, 675
CviQI GTAC 3 cut(s) 281, 294, 684
DdeI CTNAG 1 cut(s) 626
DpnI GATC 2 cut(s) 27, 653
DpnII GATC 2 cut(s) 25, 651
EaeI YGGCCR 1 cut(s) 438
Eco31I GGTCTC 1 cut(s) 78
FaeI CATG 3 cut(s) 135, 300, 575
FatI CATG 3 cut(s) 131, 296, 571
FauI CCCGC 2 cut(s) 14, 349
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 5 cut(s) 19, 215, 218, 414, 501
Fsp4HI GCNGC 5 cut(s) 19, 215, 218, 414, 501
GlaI GCGC 1 cut(s) 71
GluI GCNGC 5 cut(s) 19, 215, 218, 414, 501
HaeIII GGCC 1 cut(s) 440
HapII CCGG 2 cut(s) 34, 598
HhaI GCGC 1 cut(s) 72
Hin1II CATG 3 cut(s) 135, 300, 575
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HpaII CCGG 2 cut(s) 34, 598
HphI GGTGA 3 cut(s) 103, 499, 628
Hpy166II GTNNAC 2 cut(s) 289, 595
Hpy188I TCNGA 2 cut(s) 15, 61
Hpy188III TCNNGA 1 cut(s) 402
Hpy8I GTNNAC 2 cut(s) 289, 595
Hpy99I CGWCG 1 cut(s) 33
HpyCH4III ACNGT 5 cut(s) 11, 89, 293, 515, 640
HpyCH4V TGCA 5 cut(s) 131, 199, 300, 329, 474
HpyF10VI GCNNNNNNNGC 3 cut(s) 506, 515, 524
HpyF3I CTNAG 1 cut(s) 626
Hsp92II CATG 3 cut(s) 135, 300, 575
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 25, 651
LmnI GCTCC 2 cut(s) 15, 585
LpnPI CCDG 7 cut(s) 47, 65, 80, 167, 185, 297, 611
Lsp1109I GCAGC 5 cut(s) 30, 201, 204, 425, 487
LweI GCATC 1 cut(s) 129
MalI GATC 2 cut(s) 27, 653
MboI GATC 2 cut(s) 25, 651
MboII GAAGA 4 cut(s) 16, 200, 218, 573
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 9 cut(s) 174, 190, 306, 388, 464, 469, 540, 631, 664
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 6 cut(s) 44, 47, 139, 306, 483, 490
MseI TTAA 2 cut(s) 387, 697
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 2 cut(s) 34, 598
MunI CAATTG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 506, 515, 524
NdeII GATC 2 cut(s) 25, 651
NlaIII CATG 3 cut(s) 135, 300, 575
NspI RCATGY 2 cut(s) 135, 300
NspV TTCGAA 1 cut(s) 250
PinAI ACCGGT 1 cut(s) 597
PkrI GCNGC 5 cut(s) 20, 216, 219, 415, 502
RsaI GTAC 3 cut(s) 282, 295, 685
RsaNI GTAC 3 cut(s) 281, 294, 684
SaqAI TTAA 2 cut(s) 387, 697
SatI GCNGC 5 cut(s) 19, 215, 218, 414, 501
Sau3AI GATC 2 cut(s) 25, 651
SduI GDGCHC 1 cut(s) 520
SetI ASST 4 cut(s) 204, 460, 481, 590
SfaNI GCATC 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 250
SgrAI CRCCGGYG 1 cut(s) 33
Sse9I AATT 9 cut(s) 174, 190, 306, 388, 464, 469, 540, 631, 664
SsiI CCGC 5 cut(s) 21, 356, 428, 434, 503
TaaI ACNGT 5 cut(s) 11, 89, 293, 515, 640
TaqI TCGA 5 cut(s) 250, 403, 452, 654, 662
TaqII GACCGA 1 cut(s) 194
TasI AATT 9 cut(s) 174, 190, 306, 388, 464, 469, 540, 631, 664
TatI WGTACW 2 cut(s) 293, 683
Tru1I TTAA 2 cut(s) 387, 697
Tru9I TTAA 2 cut(s) 387, 697
TseI GCWGC 5 cut(s) 18, 214, 217, 413, 500
TspDTI ATGAA 4 cut(s) 17, 336, 387, 438
XceI RCATGY 2 cut(s) 135, 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.