Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018990

Physical Location & Seq

Genomic Coordinates Reverse (-)

40209141 .. 40213098

Gene Structure 3958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTGGTTCACAGGGGACATATTTGACAAGGAACCGAAGCAGCCTTCATGTTGTGCTTCACTAGTTGATTGGATTGGGGCAAGGATTGTTGCTGCAATATTGTGGCCTTTGCATGTGTTGGGAACAAAACTAGTCTATAGTAAAATTCACTCTGCTATTGGAATATCAAAGGTTATTTCTCTTACTTTTTGGACCGACAAGTCGGGTTATTTCAGTTCTTTTTGGGCATCCACTTCAACATACGAGTTCAAAGTTGTAAACTCTAAAACTGGTAAAGTTCTCCCACCTGGTTCAAGTGGCATTGTAAACGTCGGGGGTCCGCAAGTGATGAAAGGATATTACAAGCTTAGAGCTAGGCTCATTAGGAAAGCATTGGAAGTGGATGATTGGCTTAGCTCTGACTTAAACAAATTGAGACAACAGAACATAACTAAAACAATGGTTGAAAGCCCAAACAAACGACAGAAAAATGAGATTGAATATTGCTTGAGACAACAGAAATTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

169

Amino Acids

19.18

Weight (kDa)

9.6

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	80 - 114	7.4e-06	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018990)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487951 RchiOBHm_Chr4g0405781
rosa_laevigata	RLG00000023864 RLG00000029465
rosa_multiflora	Rmu_co8308653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144510 Rroxscaffold_4G00315700 Rroxscaffold_5G00346300
rosa_samantha	Rh3CG336800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	199
AciI	CCGC	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	144, 500
AgsI	TTSAA	5 cut(s)	237, 250, 294, 446, 479
AhlI	ACTAGT	2 cut(s)	61, 130
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	3 cut(s)	346, 353, 396
AluI	AGCT	3 cut(s)	346, 353, 396
Alw26I	GTCTC	2 cut(s)	409, 484
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	40, 92
ApoI	RAATTY	2 cut(s)	144, 500
AspS9I	GGNCC	2 cut(s)	192, 317
AvaII	GGWCC	2 cut(s)	192, 317
BbvI	GCAGC	2 cut(s)	52, 79
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	2 cut(s)	409, 484
BcuI	ACTAGT	2 cut(s)	61, 130
BfaI	CTAG	3 cut(s)	62, 131, 354
BfmI	CTRYAG	1 cut(s)	136
BisI	GCNGC	2 cut(s)	41, 93
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	2 cut(s)	42, 94
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	192, 317
BmgT120I	GGNCC	2 cut(s)	192, 317
BmiI	GGNNCC	2 cut(s)	33, 318
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	342, 374
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	508
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	227, 388
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	52, 79
BshFI	GGCC	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	409, 484
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	106
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	33, 318
BsrI	ACTGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	347, 392
BstF5I	GGATG	2 cut(s)	227, 388
BstMAI	GTCTC	2 cut(s)	409, 484
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	2 cut(s)	52, 79
BsuRI	GGCC	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	227, 388
Cfr13I	GGNCC	2 cut(s)	192, 317
CsiI	ACCWGGT	1 cut(s)	286
CviAII	CATG	2 cut(s)	48, 113
CviJI	RGCY	8 cut(s)	43, 106, 346, 353, 358, 391, 396, 450
CviKI_1	RGCY	8 cut(s)	43, 106, 346, 353, 358, 391, 396, 450
DdeI	CTNAG	2 cut(s)	347, 392
DrdI	GACNNNNNNGTC	1 cut(s)	199
DseDI	GACNNNNNNGTC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	192, 317
EcoRII	CCWGG	1 cut(s)	286
FaeI	CATG	2 cut(s)	51, 116
FaiI	YATR	6 cut(s)	20, 49, 114, 138, 241, 428
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	2 cut(s)	47, 112
Fnu4HI	GCNGC	2 cut(s)	41, 93
FokI	GGATG	2 cut(s)	214, 395
Fsp4HI	GCNGC	2 cut(s)	41, 93
FspBI	CTAG	3 cut(s)	62, 131, 354
GluI	GCNGC	2 cut(s)	41, 93
HaeIII	GGCC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	51, 116
HindIII	AAGCTT	1 cut(s)	344
Hpy166II	GTNNAC	3 cut(s)	9, 259, 307
Hpy188I	TCNGA	1 cut(s)	400
Hpy8I	GTNNAC	3 cut(s)	9, 259, 307
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	54
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	2 cut(s)	95, 112
HpyF3I	CTNAG	2 cut(s)	347, 392
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	2 cut(s)	51, 116
LpnPI	CCDG	3 cut(s)	255, 273, 300
Lsp1109I	GCAGC	2 cut(s)	52, 79
LweI	GCATC	1 cut(s)	236
MabI	ACCWGGT	1 cut(s)	286
MaeI	CTAG	3 cut(s)	62, 131, 354
MaeII	ACGT	1 cut(s)	309
MluCI	AATT	3 cut(s)	144, 410, 500
MseI	TTAA	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
NlaIII	CATG	2 cut(s)	51, 116
NlaIV	GGNNCC	2 cut(s)	33, 318
NspI	RCATGY	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	42, 94
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	33, 318
PspPI	GGNCC	2 cut(s)	192, 317
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	2 cut(s)	41, 93
Sau96I	GGNCC	2 cut(s)	192, 317
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	6 cut(s)	174, 289, 312, 348, 355, 398
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	236
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	192, 317
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
SpeI	ACTAGT	2 cut(s)	61, 130
Sse9I	AATT	3 cut(s)	144, 410, 500
SsiI	CCGC	1 cut(s)	320
SspI	AATATT	2 cut(s)	99, 482
SspMI	CTAG	3 cut(s)	62, 131, 354
StyD4I	CCNGG	1 cut(s)	286
TaiI	ACGT	1 cut(s)	312
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	3 cut(s)	144, 410, 500
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TseI	GCWGC	2 cut(s)	40, 92
TspDTI	ATGAA	2 cut(s)	36, 344
VpaK11BI	GGWCC	2 cut(s)	192, 317
XapI	RAATTY	2 cut(s)	144, 500
XceI	RCATGY	1 cut(s)	116
XspI	CTAG	3 cut(s)	62, 131, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.