Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018990

Physical Location & Seq

Genomic Coordinates Forward (+)

82396652 .. 82408233

Gene Structure 11582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTGGTTCACAGGGGACATATTTGACAAGGAACCGAAGCAACCTTCATGTTGTGCTTCACTAGTTGATTGGATGGGGGCAAGGATTGTTGCTGCAATATTGTGGCCTTTGCATGTATTGGTAACAAAATTAGTCTATAGTAAAATTCACTCTGCTATTGGAATATCAAAGTTCGACATCCACTTGGACATACGAGAGTTCAAAGTTGTAGACTCTAAAACTGGTGAAGTTCTCCCACCTGGTTCAAGTGGCATTGTAAACGTCAAGGGTCCGCAAGTGATGAAAGGATATTACAAGGTTTCACAATTTATGTTGTATCAAGAAAATAGAACAACGAAACAAAAAGATCATTTGTTGTTTCTACCAACTTCAAACAACATAAAAAGTCGGTATCATGTAGTGCATAGAAATGAGAATAAAGGTCTTCGATTCACCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

146

Amino Acids

16.68

Weight (kDa)

9.6

Isoelectric Point (pI)

31.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	66 - 98	1.6e-06	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018990)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487951 RchiOBHm_Chr4g0405781
rosa_laevigata	RLG00000023864 RLG00000029465
rosa_multiflora	Rmu_co8308653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144510 Rroxscaffold_4G00315700 Rroxscaffold_5G00346300
rosa_samantha	Rh3CG336800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	1 cut(s)	272
AcsI	RAATTY	1 cut(s)	144
AgsI	TTSAA	3 cut(s)	202, 246, 372
AhlI	ACTAGT	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	236, 424
AvaII	GGWCC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	240
BcuI	ACTAGT	1 cut(s)	61
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	136
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	33, 270
BmrFI	CCNGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	78, 177
BseNI	ACTGG	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	346
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	33, 270
BsrI	ACTGG	1 cut(s)	226
BssMI	GATC	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	1 cut(s)	436
BstF5I	GGATG	2 cut(s)	78, 177
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	78, 177
Cfr13I	GGNCC	1 cut(s)	269
CsiI	ACCWGGT	1 cut(s)	238
CviAII	CATG	3 cut(s)	48, 113, 395
CviJI	RGCY	1 cut(s)	106
CviKI_1	RGCY	1 cut(s)	106
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	51, 116, 398
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	3 cut(s)	47, 112, 394
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	2 cut(s)	85, 164
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	106
Hin1II	CATG	3 cut(s)	51, 116, 398
HinfI	GANTC	2 cut(s)	212, 429
HphI	GGTGA	2 cut(s)	236, 424
Hpy166II	GTNNAC	3 cut(s)	9, 211, 259
Hpy188III	TCNNGA	1 cut(s)	320
Hpy8I	GTNNAC	3 cut(s)	9, 211, 259
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	3 cut(s)	95, 112, 403
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	3 cut(s)	51, 116, 398
Kzo9I	GATC	1 cut(s)	346
LpnPI	CCDG	3 cut(s)	207, 225, 252
Lsp1109I	GCAGC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	238
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	1 cut(s)	416
MluCI	AATT	3 cut(s)	128, 144, 305
MlyI	GAGTC	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	3 cut(s)	51, 116, 398
NlaIV	GGNNCC	2 cut(s)	33, 270
NspI	RCATGY	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	33, 270
PspPI	GGNCC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	408
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	5 cut(s)	46, 241, 264, 300, 424
SexAI	ACCWGGT	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	408
SpeI	ACTAGT	1 cut(s)	61
Sse9I	AATT	3 cut(s)	128, 144, 305
SsiI	CCGC	1 cut(s)	272
SspI	AATATT	1 cut(s)	99
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	174, 427
TasI	AATT	3 cut(s)	128, 144, 305
TfiI	GAWTC	1 cut(s)	429
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	36, 296
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	144
XceI	RCATGY	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.