Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0018990

Physical Location & Seq

Genomic Coordinates Reverse (-)

39097761 .. 39103738

Gene Structure 5978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029465

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGTGAAGAAGACACTGTTGGTGGAGTTCTTCGATTTCACAAACGATTTCACGGGGACATATTTGACAAGGAACCAGAAGCAGCCTTCATGTTGTGCTTCACTAGTTGATTGGATGGGGGCAAGGATTGTTGTTGCAATATTATGGCCTTTGCATGTGTTGGGAACAAAACTAGTCTATAGTAAAATTCACTCTGCTATTGGAATATCAAAGGCAATAGGCATAAAAGTGCAAAATGGATATGGTTTAACAGAGAGTTCTCCTGTTGTTGCTGCTCGGAGACCAAACTGTAATTTGGGCATCCACTTAGACATACAGCTGGAGTTCAAAGTTGTAGACTCTAAAACTGGTGAAGTTCTCCCACCTGGTTCAAGTGACATTGTAAGAAATTGTGGACGACAAGAACTTGGAGTTTGCTACCAAGGAACAGTCAGAGCAGCGGGGATCGTCGCCGGTGTCGGCGACAAGGAGGAGGCTCTGATGTCCGGCGCAACCAACTGGGAGACCGTTATGGTCAAATTGATGATTGGGAGAATTGGGTGCAGGTCGGTCTTCGACTGCTGCTCTGTCCTCTTGGTTCTAACATTGTTATTCGAACAGCGTGTTGTTCTGTGGGGATTGTTGTACCAGTATACTGTACATGCAAGGCAATTGAGAGGAAAGATAAAACTGCACAACAGAAGTGGCTTCTTTATTGGGCGGGTTGGGATTTGTATTTTTTATTTTTGTTTTCCTTTCATCTCGAACAGAAGCAGCCTTGATGGTGGCGGTGGCGGTGGCGGTGGCCGTGCGTTCATCGACGGCTTGGGTTATGATGTGAGGCAAGAGGCTGCGGTGGCATACGGTGCTCTTTGTGCTGTGGTTTGTTCAATTCCTATAACTTCAAATGGAAGACAGAACCATGTTATGCTAGGGAGCTTGGTTTACCGGTTCGTTGGTTGGGCGCTGTCGTTGCTTAGCAATTTCACTGTGATTAGATTGATCGAGCTATCGGATTGTATTGGCTTGTATTGTTCTATTGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

343

Amino Acids

37.27

Weight (kDa)

8.82

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018990)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0487951 RchiOBHm_Chr4g0405781
rosa_laevigata	RLG00000023864 RLG00000029465
rosa_multiflora	Rmu_co8308653.1_g000001
rosa_roxburghii	Rroxscaffold_2G00144510 Rroxscaffold_4G00315700 Rroxscaffold_5G00346300
rosa_samantha	Rh3CG336800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	534
AccI	GTMKAC	2 cut(s)	336, 632
AciI	CCGC	6 cut(s)	440, 700, 768, 774, 780, 833
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	1 cut(s)	186
AfaI	GTAC	2 cut(s)	626, 639
AgeI	ACCGGT	1 cut(s)	927
AgsI	TTSAA	4 cut(s)	328, 372, 870, 885
AhlI	ACTAGT	2 cut(s)	103, 172
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	3 cut(s)	319, 918, 988
AluI	AGCT	3 cut(s)	319, 918, 988
Alw21I	GWGCWC	1 cut(s)	850
Alw26I	GTCTC	2 cut(s)	274, 497
AlwI	GGATC	1 cut(s)	452
AoxI	GGCC	2 cut(s)	146, 784
ApeKI	GCWGC	6 cut(s)	82, 272, 437, 561, 753, 830
ApoI	RAATTY	1 cut(s)	186
AsiGI	ACCGGT	1 cut(s)	927
AspLEI	GCGC	2 cut(s)	491, 946
AsuHPI	GGTGA	2 cut(s)	16, 362
AsuII	TTCGAA	1 cut(s)	594
BbsI	GAAGAC	3 cut(s)	17, 544, 898
Bbv12I	GWGCWC	1 cut(s)	850
BbvI	GCAGC	6 cut(s)	94, 259, 449, 548, 765, 817
BccI	CCATC	2 cut(s)	109, 755
BceAI	ACGGC	2 cut(s)	771, 817
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	274, 497
BcuI	ACTAGT	2 cut(s)	103, 172
BfaI	CTAG	3 cut(s)	104, 173, 911
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	947
BfuAI	ACCTGC	1 cut(s)	534
BisI	GCNGC	6 cut(s)	83, 273, 438, 562, 754, 831
BlpI	GCTNAGC	1 cut(s)	956
BlsI	GCNGC	6 cut(s)	84, 274, 439, 563, 755, 832
Bme1390I	CCNGG	1 cut(s)	366
BmiI	GGNNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	508
BmsI	GCATC	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	508
BpiI	GAAGAC	3 cut(s)	17, 544, 898
BpmI	CTGGAG	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	956
Bpu14I	TTCGAA	1 cut(s)	594
BsaI	GGTCTC	2 cut(s)	274, 497
BsaJI	CCNNGG	1 cut(s)	421
BsaWI	WCCGGW	1 cut(s)	927
Bse118I	RCCGGY	2 cut(s)	452, 927
Bse1I	ACTGG	3 cut(s)	352, 503, 628
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	2 cut(s)	120, 300
BseNI	ACTGG	3 cut(s)	352, 503, 628
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	6 cut(s)	94, 259, 449, 548, 765, 817
BsgI	GTGCAG	2 cut(s)	562, 656
BshFI	GGCC	2 cut(s)	148, 786
BshTI	ACCGGT	1 cut(s)	927
BsiHKAI	GWGCWC	1 cut(s)	850
BsiSI	CCGG	3 cut(s)	453, 486, 928
BslFI	GGGAC	1 cut(s)	70
BsmAI	GTCTC	2 cut(s)	274, 497
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	148, 786
Bso31I	GGTCTC	2 cut(s)	274, 497
Bsp119I	TTCGAA	1 cut(s)	594
Bsp1286I	GDGCHC	1 cut(s)	850
Bsp1407I	TGTACA	1 cut(s)	637
Bsp143I	GATC	2 cut(s)	444, 981
Bsp1720I	GCTNAGC	1 cut(s)	956
BspACI	CCGC	6 cut(s)	440, 700, 768, 774, 780, 833
BspANI	GGCC	2 cut(s)	148, 786
BspLI	GGNNCC	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	534
BspPI	GGATC	1 cut(s)	452
BspT104I	TTCGAA	1 cut(s)	594
BspTNI	GGTCTC	2 cut(s)	274, 497
BsrFI	RCCGGY	2 cut(s)	452, 927
BsrGI	TGTACA	1 cut(s)	637
BsrI	ACTGG	3 cut(s)	352, 503, 628
BssAI	RCCGGY	2 cut(s)	452, 927
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	2 cut(s)	444, 981
BssNAI	GTATAC	1 cut(s)	633
BssT1I	CCWWGG	1 cut(s)	421
Bst1107I	GTATAC	1 cut(s)	633
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	7 cut(s)	18, 290, 430, 508, 637, 845, 970
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstAUI	TGTACA	1 cut(s)	637
BstBI	TTCGAA	1 cut(s)	594
BstDEI	CTNAG	2 cut(s)	307, 956
BstF5I	GGATG	2 cut(s)	120, 300
BstH2I	RGCGCY	1 cut(s)	947
BstHHI	GCGC	2 cut(s)	491, 946
BstKTI	GATC	2 cut(s)	447, 984
BstMAI	GTCTC	2 cut(s)	274, 497
BstMBI	GATC	2 cut(s)	444, 981
BstMWI	GCNNNNNNNGC	4 cut(s)	836, 845, 854, 952
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	2 cut(s)	158, 644
BstSCI	CCNGG	1 cut(s)	364
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	6 cut(s)	94, 259, 449, 548, 765, 817
BstV2I	GAAGAC	3 cut(s)	17, 544, 898
BstZ17I	GTATAC	1 cut(s)	633
BsuRI	GGCC	2 cut(s)	148, 786
BtsCI	GGATG	2 cut(s)	120, 300
BtsIMutI	CAGTG	2 cut(s)	14, 966
BveI	ACCTGC	1 cut(s)	534
CfoI	GCGC	2 cut(s)	491, 946
Cfr10I	RCCGGY	2 cut(s)	452, 927
CsiI	ACCWGGT	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	625, 638
CspAI	ACCGGT	1 cut(s)	927
CspCI	CAANNNNNGTGG	2 cut(s)	664, 699
CviAII	CATG	4 cut(s)	90, 155, 641, 902
CviQI	GTAC	2 cut(s)	625, 638
DdeI	CTNAG	2 cut(s)	307, 956
DpnI	GATC	2 cut(s)	446, 983
DpnII	GATC	2 cut(s)	444, 981
EaeI	YGGCCR	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	421
Eco31I	GGTCTC	2 cut(s)	274, 497
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	4 cut(s)	93, 158, 644, 905
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	4 cut(s)	89, 154, 640, 901
FauI	CCCGC	2 cut(s)	433, 693
FblI	GTMKAC	2 cut(s)	336, 632
Fnu4HI	GCNGC	6 cut(s)	83, 273, 438, 562, 754, 831
FokI	GGATG	2 cut(s)	127, 287
Fsp4HI	GCNGC	6 cut(s)	83, 273, 438, 562, 754, 831
FspBI	CTAG	3 cut(s)	104, 173, 911
GlaI	GCGC	2 cut(s)	490, 945
GluI	GCNGC	6 cut(s)	83, 273, 438, 562, 754, 831
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	947
HaeIII	GGCC	2 cut(s)	148, 786
HapII	CCGG	3 cut(s)	453, 486, 928
HhaI	GCGC	2 cut(s)	491, 946
Hin1II	CATG	4 cut(s)	93, 158, 644, 905
Hin6I	GCGC	2 cut(s)	489, 944
HinP1I	GCGC	2 cut(s)	489, 944
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	3 cut(s)	453, 486, 928
HphI	GGTGA	2 cut(s)	16, 362
Hpy166II	GTNNAC	4 cut(s)	337, 395, 633, 925
Hpy188I	TCNGA	4 cut(s)	279, 434, 480, 994
Hpy188III	TCNNGA	1 cut(s)	742
Hpy8I	GTNNAC	4 cut(s)	337, 395, 633, 925
Hpy99I	CGWCG	2 cut(s)	452, 803
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	7 cut(s)	18, 290, 430, 508, 637, 845, 970
HpyCH4V	TGCA	6 cut(s)	137, 154, 232, 543, 644, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	836, 845, 854, 952
HpyF3I	CTNAG	2 cut(s)	307, 956
Hsp92II	CATG	4 cut(s)	93, 158, 644, 905
HspAI	GCGC	2 cut(s)	489, 944
Kzo9I	GATC	2 cut(s)	444, 981
LmnI	GCTCC	1 cut(s)	915
Lsp1109I	GCAGC	6 cut(s)	94, 259, 449, 548, 765, 817
LweI	GCATC	1 cut(s)	309
MabI	ACCWGGT	1 cut(s)	364
MaeI	CTAG	3 cut(s)	104, 173, 911
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	2 cut(s)	446, 983
MboI	GATC	2 cut(s)	444, 981
MboII	GAAGA	5 cut(s)	19, 22, 22, 544, 903
MfeI	CAATTG	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	850
MluCI	AATT	8 cut(s)	186, 292, 388, 518, 534, 650, 870, 961
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	6 cut(s)	463, 466, 581, 650, 813, 820
MseI	TTAA	2 cut(s)	248, 1027
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	2 cut(s)	319, 440
MspI	CCGG	3 cut(s)	453, 486, 928
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	4 cut(s)	836, 845, 854, 952
NdeII	GATC	2 cut(s)	444, 981
NlaIII	CATG	4 cut(s)	93, 158, 644, 905
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	2 cut(s)	158, 644
NspV	TTCGAA	1 cut(s)	594
PinAI	ACCGGT	1 cut(s)	927
PkrI	GCNGC	6 cut(s)	84, 274, 439, 563, 755, 832
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	74
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	2 cut(s)	626, 639
RsaNI	GTAC	2 cut(s)	625, 638
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	248, 1027
SatI	GCNGC	6 cut(s)	83, 273, 438, 562, 754, 831
Sau3AI	GATC	2 cut(s)	444, 981
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	850
SetI	ASST	5 cut(s)	321, 367, 548, 920, 990
SexAI	ACCWGGT	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	178
SfuI	TTCGAA	1 cut(s)	594
SgrAI	CRCCGGYG	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	227
SpeI	ACTAGT	2 cut(s)	103, 172
Sse9I	AATT	8 cut(s)	186, 292, 388, 518, 534, 650, 870, 961
SsiI	CCGC	6 cut(s)	440, 700, 768, 774, 780, 833
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	3 cut(s)	104, 173, 911
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	7 cut(s)	18, 290, 430, 508, 637, 845, 970
TaqI	TCGA	6 cut(s)	33, 555, 594, 743, 798, 984
TaqII	GACCGA	1 cut(s)	538
TasI	AATT	8 cut(s)	186, 292, 388, 518, 534, 650, 870, 961
TatI	WGTACW	1 cut(s)	637
Tru1I	TTAA	2 cut(s)	248, 1027
Tru9I	TTAA	2 cut(s)	248, 1027
TscAI	CASTG	2 cut(s)	21, 973
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	6 cut(s)	82, 272, 437, 561, 753, 830
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	78, 727, 784
TspRI	CASTG	2 cut(s)	21, 973
XapI	RAATTY	1 cut(s)	186
XceI	RCATGY	2 cut(s)	158, 644
XmiI	GTMKAC	2 cut(s)	336, 632
XspI	CTAG	3 cut(s)	104, 173, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.