Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0473261 RchiOBHm_Chr3g0473321 |
| rosa_laevigata | RLG00000024008 |
| rosa_multiflora | Rmu_sc0000908.1_g000015 |
| rosa_roxburghii | Rroxscaffold_6G00408160 |
| rosa_samantha | Rh3BG210600 Rh3BG210900 Rh3DG207800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 38 |
| AfaI | GTAC | 1 cut(s) | 476 |
| AfeI | AGCGCT | 1 cut(s) | 360 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 231, 538 |
| AflIII | ACRYGT | 2 cut(s) | 79, 213 |
| AgsI | TTSAA | 3 cut(s) | 59, 93, 351 |
| AjnI | CCWGG | 1 cut(s) | 175 |
| AluBI | AGCT | 2 cut(s) | 55, 299 |
| AluI | AGCT | 2 cut(s) | 55, 299 |
| Alw21I | GWGCWC | 1 cut(s) | 79 |
| Alw26I | GTCTC | 2 cut(s) | 147, 240 |
| Aor51HI | AGCGCT | 1 cut(s) | 360 |
| ApeKI | GCWGC | 2 cut(s) | 35, 159 |
| AspLEI | GCGC | 1 cut(s) | 361 |
| AsuC2I | CCSGG | 1 cut(s) | 421 |
| AsuHPI | GGTGA | 1 cut(s) | 521 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 348, 380 |
| BbsI | GAAGAC | 1 cut(s) | 269 |
| Bbv12I | GWGCWC | 1 cut(s) | 79 |
| BbvI | GCAGC | 2 cut(s) | 47, 171 |
| BccI | CCATC | 1 cut(s) | 536 |
| BciT130I | CCWGG | 1 cut(s) | 177 |
| BclI | TGATCA | 1 cut(s) | 283 |
| BcnI | CCSGG | 1 cut(s) | 421 |
| BcoDI | GTCTC | 2 cut(s) | 147, 240 |
| BfoI | RGCGCY | 1 cut(s) | 362 |
| BglII | AGATCT | 1 cut(s) | 319 |
| BisI | GCNGC | 2 cut(s) | 36, 160 |
| BlsI | GCNGC | 2 cut(s) | 37, 161 |
| Bme1390I | CCNGG | 2 cut(s) | 177, 421 |
| BmiI | GGNNCC | 1 cut(s) | 223 |
| BmrFI | CCNGG | 2 cut(s) | 177, 421 |
| BpiI | GAAGAC | 1 cut(s) | 269 |
| BpuMI | CCSGG | 1 cut(s) | 421 |
| BsaI | GGTCTC | 1 cut(s) | 240 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 66, 96 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 231, 538 |
| Bse1I | ACTGG | 2 cut(s) | 36, 572 |
| BseBI | CCWGG | 1 cut(s) | 177 |
| BseGI | GGATG | 2 cut(s) | 238, 547 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 231, 538 |
| BseMII | CTCAG | 2 cut(s) | 54, 257 |
| BseNI | ACTGG | 2 cut(s) | 36, 572 |
| BseXI | GCAGC | 2 cut(s) | 47, 171 |
| BsiHKAI | GWGCWC | 1 cut(s) | 79 |
| BsiSI | CCGG | 1 cut(s) | 420 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 231, 538 |
| BsmAI | GTCTC | 2 cut(s) | 147, 240 |
| Bso31I | GGTCTC | 1 cut(s) | 240 |
| Bsp1286I | GDGCHC | 1 cut(s) | 79 |
| Bsp143I | GATC | 3 cut(s) | 283, 288, 319 |
| BspACI | CCGC | 1 cut(s) | 38 |
| BspCNI | CTCAG | 2 cut(s) | 55, 256 |
| BspHI | TCATGA | 1 cut(s) | 331 |
| BspLI | GGNNCC | 1 cut(s) | 223 |
| BspTNI | GGTCTC | 1 cut(s) | 240 |
| BsrI | ACTGG | 2 cut(s) | 36, 572 |
| BssMI | GATC | 3 cut(s) | 283, 288, 319 |
| Bst2UI | CCWGG | 1 cut(s) | 177 |
| BstC8I | GCNNGC | 1 cut(s) | 417 |
| BstDEI | CTNAG | 2 cut(s) | 63, 243 |
| BstF5I | GGATG | 2 cut(s) | 238, 547 |
| BstH2I | RGCGCY | 1 cut(s) | 362 |
| BstHHI | GCGC | 1 cut(s) | 361 |
| BstKTI | GATC | 3 cut(s) | 286, 291, 322 |
| BstMAI | GTCTC | 2 cut(s) | 147, 240 |
| BstMBI | GATC | 3 cut(s) | 283, 288, 319 |
| BstNI | CCWGG | 1 cut(s) | 177 |
| BstNSI | RCATGY | 2 cut(s) | 83, 104 |
| BstSCI | CCNGG | 2 cut(s) | 175, 419 |
| BstV1I | GCAGC | 2 cut(s) | 47, 171 |
| BstV2I | GAAGAC | 1 cut(s) | 269 |
| BstX2I | RGATCY | 1 cut(s) | 319 |
| BstYI | RGATCY | 1 cut(s) | 319 |
| BtsCI | GGATG | 2 cut(s) | 238, 547 |
| BtsIMutI | CAGTG | 1 cut(s) | 401 |
| Cac8I | GCNNGC | 1 cut(s) | 417 |
| CciI | TCATGA | 1 cut(s) | 331 |
| CfoI | GCGC | 1 cut(s) | 361 |
| Csp6I | GTAC | 1 cut(s) | 475 |
| CviAII | CATG | 6 cut(s) | 8, 80, 101, 163, 332, 555 |
| CviJI | RGCY | 4 cut(s) | 55, 224, 299, 427 |
| CviKI_1 | RGCY | 4 cut(s) | 55, 224, 299, 427 |
| CviQI | GTAC | 1 cut(s) | 475 |
| DdeI | CTNAG | 2 cut(s) | 63, 243 |
| DpnI | GATC | 3 cut(s) | 285, 290, 321 |
| DpnII | GATC | 3 cut(s) | 283, 288, 319 |
| Eco31I | GGTCTC | 1 cut(s) | 240 |
| Eco47III | AGCGCT | 1 cut(s) | 360 |
| EcoRII | CCWGG | 1 cut(s) | 175 |
| FaeI | CATG | 6 cut(s) | 11, 83, 104, 166, 335, 558 |
| FatI | CATG | 6 cut(s) | 7, 79, 100, 162, 331, 554 |
| FbaI | TGATCA | 1 cut(s) | 283 |
| Fnu4HI | GCNGC | 2 cut(s) | 36, 160 |
| FokI | GGATG | 2 cut(s) | 225, 554 |
| Fsp4HI | GCNGC | 2 cut(s) | 36, 160 |
| GlaI | GCGC | 1 cut(s) | 360 |
| GluI | GCNGC | 2 cut(s) | 36, 160 |
| HaeII | RGCGCY | 1 cut(s) | 362 |
| HapII | CCGG | 1 cut(s) | 420 |
| HhaI | GCGC | 1 cut(s) | 361 |
| Hin1II | CATG | 6 cut(s) | 11, 83, 104, 166, 335, 558 |
| Hin6I | GCGC | 1 cut(s) | 359 |
| HinP1I | GCGC | 1 cut(s) | 359 |
| HinfI | GANTC | 2 cut(s) | 4, 461 |
| HpaII | CCGG | 1 cut(s) | 420 |
| HphI | GGTGA | 1 cut(s) | 521 |
| Hpy188I | TCNGA | 3 cut(s) | 131, 246, 288 |
| Hpy188III | TCNNGA | 3 cut(s) | 281, 292, 332 |
| HpyCH4IV | ACGT | 1 cut(s) | 215 |
| HpyCH4V | TGCA | 4 cut(s) | 104, 395, 401, 467 |
| HpyF3I | CTNAG | 2 cut(s) | 63, 243 |
| HpySE526I | ACGT | 1 cut(s) | 215 |
| Hsp92II | CATG | 6 cut(s) | 11, 83, 104, 166, 335, 558 |
| HspAI | GCGC | 1 cut(s) | 359 |
| Ksp22I | TGATCA | 1 cut(s) | 283 |
| Kzo9I | GATC | 3 cut(s) | 283, 288, 319 |
| LmnI | GCTCC | 3 cut(s) | 74, 109, 221 |
| LpnPI | CCDG | 8 cut(s) | 17, 75, 162, 189, 285, 429, 433, 553 |
| Lsp1109I | GCAGC | 2 cut(s) | 47, 171 |
| MaeII | ACGT | 1 cut(s) | 215 |
| MalI | GATC | 3 cut(s) | 285, 290, 321 |
| MboI | GATC | 3 cut(s) | 283, 288, 319 |
| MflI | RGATCY | 1 cut(s) | 319 |
| MhlI | GDGCHC | 1 cut(s) | 79 |
| MluCI | AATT | 3 cut(s) | 44, 170, 346 |
| MmeI | TCCRAC | 2 cut(s) | 178, 472 |
| MnlI | CCTC | 3 cut(s) | 15, 252, 375 |
| MspA1I | CMGCKG | 1 cut(s) | 38 |
| MspI | CCGG | 1 cut(s) | 420 |
| MspR9I | CCNGG | 2 cut(s) | 177, 421 |
| MvaI | CCWGG | 1 cut(s) | 177 |
| NciI | CCSGG | 1 cut(s) | 421 |
| NdeII | GATC | 3 cut(s) | 283, 288, 319 |
| NlaIII | CATG | 6 cut(s) | 11, 83, 104, 166, 335, 558 |
| NlaIV | GGNNCC | 1 cut(s) | 223 |
| NspI | RCATGY | 2 cut(s) | 83, 104 |
| PagI | TCATGA | 1 cut(s) | 331 |
| PciI | ACATGT | 1 cut(s) | 79 |
| PfeI | GAWTC | 2 cut(s) | 4, 461 |
| PkrI | GCNGC | 2 cut(s) | 37, 161 |
| PscI | ACATGT | 1 cut(s) | 79 |
| Psp6I | CCWGG | 1 cut(s) | 175 |
| PspGI | CCWGG | 1 cut(s) | 175 |
| PspN4I | GGNNCC | 1 cut(s) | 223 |
| PsuI | RGATCY | 1 cut(s) | 319 |
| RsaI | GTAC | 1 cut(s) | 476 |
| RsaNI | GTAC | 1 cut(s) | 475 |
| SatI | GCNGC | 2 cut(s) | 36, 160 |
| Sau3AI | GATC | 3 cut(s) | 283, 288, 319 |
| ScrFI | CCNGG | 2 cut(s) | 177, 421 |
| SduI | GDGCHC | 1 cut(s) | 79 |
| SetI | ASST | 5 cut(s) | 57, 64, 218, 301, 357 |
| Sse9I | AATT | 3 cut(s) | 44, 170, 346 |
| SsiI | CCGC | 1 cut(s) | 38 |
| StyD4I | CCNGG | 2 cut(s) | 175, 419 |
| TaiI | ACGT | 1 cut(s) | 218 |
| TasI | AATT | 3 cut(s) | 44, 170, 346 |
| TatI | WGTACW | 1 cut(s) | 474 |
| TfiI | GAWTC | 2 cut(s) | 4, 461 |
| TscAI | CASTG | 1 cut(s) | 408 |
| TseI | GCWGC | 2 cut(s) | 35, 159 |
| TspDTI | ATGAA | 3 cut(s) | 179, 320, 543 |
| TspGWI | ACGGA | 1 cut(s) | 554 |
| TspRI | CASTG | 1 cut(s) | 408 |
| XceI | RCATGY | 2 cut(s) | 83, 104 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 539 |