Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0473261 RchiOBHm_Chr3g0473321 |
| rosa_laevigata | RLG00000024008 |
| rosa_multiflora | Rmu_sc0000908.1_g000015 |
| rosa_roxburghii | Rroxscaffold_6G00408160 |
| rosa_samantha | Rh3BG210600 Rh3BG210900 Rh3DG207800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 350 |
| AcuI | CTGAAG | 1 cut(s) | 380 |
| AcvI | CACGTG | 1 cut(s) | 70 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 87 |
| AflIII | ACRYGT | 3 cut(s) | 67, 69, 160 |
| AgsI | TTSAA | 2 cut(s) | 207, 443 |
| AjnI | CCWGG | 1 cut(s) | 31 |
| AluBI | AGCT | 2 cut(s) | 155, 217 |
| AluI | AGCT | 2 cut(s) | 155, 217 |
| Alw26I | GTCTC | 3 cut(s) | 3, 96, 113 |
| ApeKI | GCWGC | 1 cut(s) | 15 |
| ApoI | RAATTY | 1 cut(s) | 350 |
| AsuC2I | CCSGG | 1 cut(s) | 277 |
| AsuHPI | GGTGA | 1 cut(s) | 215 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 204, 236 |
| BbrPI | CACGTG | 1 cut(s) | 70 |
| BbsI | GAAGAC | 2 cut(s) | 125, 302 |
| BbvI | GCAGC | 1 cut(s) | 27 |
| BccI | CCATC | 2 cut(s) | 234, 402 |
| BciT130I | CCWGG | 1 cut(s) | 33 |
| BclI | TGATCA | 1 cut(s) | 139 |
| BcnI | CCSGG | 1 cut(s) | 277 |
| BcoDI | GTCTC | 3 cut(s) | 3, 96, 113 |
| BfaI | CTAG | 1 cut(s) | 405 |
| BglII | AGATCT | 1 cut(s) | 175 |
| BisI | GCNGC | 1 cut(s) | 16 |
| BlsI | GCNGC | 1 cut(s) | 17 |
| Bme1390I | CCNGG | 2 cut(s) | 33, 277 |
| BmiI | GGNNCC | 1 cut(s) | 79 |
| BmrFI | CCNGG | 2 cut(s) | 33, 277 |
| BpiI | GAAGAC | 2 cut(s) | 125, 302 |
| BpuMI | CCSGG | 1 cut(s) | 277 |
| BsaAI | YACGTR | 1 cut(s) | 70 |
| BsaI | GGTCTC | 1 cut(s) | 96 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 87 |
| BseBI | CCWGG | 1 cut(s) | 33 |
| BseGI | GGATG | 2 cut(s) | 94, 400 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 87 |
| BseMII | CTCAG | 1 cut(s) | 113 |
| BseXI | GCAGC | 1 cut(s) | 27 |
| BsiSI | CCGG | 1 cut(s) | 276 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 87 |
| BsmAI | GTCTC | 3 cut(s) | 3, 96, 113 |
| BsmI | GAATGC | 1 cut(s) | 251 |
| Bso31I | GGTCTC | 1 cut(s) | 96 |
| Bsp143I | GATC | 3 cut(s) | 139, 144, 175 |
| BspCNI | CTCAG | 1 cut(s) | 112 |
| BspLI | GGNNCC | 1 cut(s) | 79 |
| BspTNI | GGTCTC | 1 cut(s) | 96 |
| BssMI | GATC | 3 cut(s) | 139, 144, 175 |
| Bst2UI | CCWGG | 1 cut(s) | 33 |
| BstBAI | YACGTR | 1 cut(s) | 70 |
| BstC8I | GCNNGC | 1 cut(s) | 273 |
| BstDEI | CTNAG | 1 cut(s) | 99 |
| BstF5I | GGATG | 2 cut(s) | 94, 400 |
| BstKTI | GATC | 3 cut(s) | 142, 147, 178 |
| BstMAI | GTCTC | 3 cut(s) | 3, 96, 113 |
| BstMBI | GATC | 3 cut(s) | 139, 144, 175 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 321, 375 |
| BstNI | CCWGG | 1 cut(s) | 33 |
| BstNSI | RCATGY | 1 cut(s) | 164 |
| BstSCI | CCNGG | 2 cut(s) | 31, 275 |
| BstV1I | GCAGC | 1 cut(s) | 27 |
| BstV2I | GAAGAC | 2 cut(s) | 125, 302 |
| BstX2I | RGATCY | 1 cut(s) | 175 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 233 |
| BstYI | RGATCY | 1 cut(s) | 175 |
| BtsCI | GGATG | 2 cut(s) | 94, 400 |
| Cac8I | GCNNGC | 1 cut(s) | 273 |
| CviAII | CATG | 3 cut(s) | 19, 161, 188 |
| CviJI | RGCY | 5 cut(s) | 80, 155, 217, 283, 434 |
| CviKI_1 | RGCY | 5 cut(s) | 80, 155, 217, 283, 434 |
| DdeI | CTNAG | 1 cut(s) | 99 |
| DpnI | GATC | 3 cut(s) | 141, 146, 177 |
| DpnII | GATC | 3 cut(s) | 139, 144, 175 |
| Eco31I | GGTCTC | 1 cut(s) | 96 |
| Eco57I | CTGAAG | 1 cut(s) | 380 |
| Eco72I | CACGTG | 1 cut(s) | 70 |
| EcoRII | CCWGG | 1 cut(s) | 31 |
| FaeI | CATG | 3 cut(s) | 22, 164, 191 |
| FatI | CATG | 3 cut(s) | 18, 160, 187 |
| FbaI | TGATCA | 1 cut(s) | 139 |
| Fnu4HI | GCNGC | 1 cut(s) | 16 |
| FokI | GGATG | 2 cut(s) | 81, 387 |
| Fsp4HI | GCNGC | 1 cut(s) | 16 |
| FspBI | CTAG | 1 cut(s) | 405 |
| GluI | GCNGC | 1 cut(s) | 16 |
| HapII | CCGG | 1 cut(s) | 276 |
| Hin1II | CATG | 3 cut(s) | 22, 164, 191 |
| HpaII | CCGG | 1 cut(s) | 276 |
| HphI | GGTGA | 1 cut(s) | 215 |
| Hpy188I | TCNGA | 3 cut(s) | 102, 144, 360 |
| Hpy188III | TCNNGA | 2 cut(s) | 137, 148 |
| HpyCH4IV | ACGT | 1 cut(s) | 69 |
| HpyCH4V | TGCA | 3 cut(s) | 245, 251, 332 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 321, 375 |
| HpyF3I | CTNAG | 1 cut(s) | 99 |
| HpySE526I | ACGT | 1 cut(s) | 69 |
| Hsp92II | CATG | 3 cut(s) | 22, 164, 191 |
| Ksp22I | TGATCA | 1 cut(s) | 139 |
| Kzo9I | GATC | 3 cut(s) | 139, 144, 175 |
| LmnI | GCTCC | 1 cut(s) | 77 |
| LpnPI | CCDG | 6 cut(s) | 18, 45, 141, 285, 289, 436 |
| Lsp1109I | GCAGC | 1 cut(s) | 27 |
| MaeI | CTAG | 1 cut(s) | 405 |
| MaeII | ACGT | 1 cut(s) | 69 |
| MalI | GATC | 3 cut(s) | 141, 146, 177 |
| MboI | GATC | 3 cut(s) | 139, 144, 175 |
| MboII | GAAGA | 6 cut(s) | 95, 115, 125, 212, 307, 359 |
| MfeI | CAATTG | 1 cut(s) | 246 |
| MflI | RGATCY | 1 cut(s) | 175 |
| MluCI | AATT | 5 cut(s) | 26, 202, 246, 350, 370 |
| MmeI | TCCRAC | 1 cut(s) | 34 |
| MnlI | CCTC | 2 cut(s) | 108, 231 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 428 |
| MspI | CCGG | 1 cut(s) | 276 |
| MspR9I | CCNGG | 2 cut(s) | 33, 277 |
| MunI | CAATTG | 1 cut(s) | 246 |
| Mva1269I | GAATGC | 1 cut(s) | 251 |
| MvaI | CCWGG | 1 cut(s) | 33 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 321, 375 |
| NciI | CCSGG | 1 cut(s) | 277 |
| NdeII | GATC | 3 cut(s) | 139, 144, 175 |
| NlaIII | CATG | 3 cut(s) | 22, 164, 191 |
| NlaIV | GGNNCC | 1 cut(s) | 79 |
| NspI | RCATGY | 1 cut(s) | 164 |
| PciI | ACATGT | 1 cut(s) | 160 |
| PctI | GAATGC | 1 cut(s) | 251 |
| PkrI | GCNGC | 1 cut(s) | 17 |
| PmaCI | CACGTG | 1 cut(s) | 70 |
| PmlI | CACGTG | 1 cut(s) | 70 |
| Ppu21I | YACGTR | 1 cut(s) | 70 |
| PscI | ACATGT | 1 cut(s) | 160 |
| Psp6I | CCWGG | 1 cut(s) | 31 |
| PspCI | CACGTG | 1 cut(s) | 70 |
| PspGI | CCWGG | 1 cut(s) | 31 |
| PspN4I | GGNNCC | 1 cut(s) | 79 |
| PsuI | RGATCY | 1 cut(s) | 175 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 428 |
| SatI | GCNGC | 1 cut(s) | 16 |
| Sau3AI | GATC | 3 cut(s) | 139, 144, 175 |
| ScrFI | CCNGG | 2 cut(s) | 33, 277 |
| SetI | ASST | 4 cut(s) | 72, 157, 213, 219 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 428 |
| Sse9I | AATT | 5 cut(s) | 26, 202, 246, 350, 370 |
| SspI | AATATT | 1 cut(s) | 447 |
| SspMI | CTAG | 1 cut(s) | 405 |
| StyD4I | CCNGG | 2 cut(s) | 31, 275 |
| TaiI | ACGT | 1 cut(s) | 72 |
| TasI | AATT | 5 cut(s) | 26, 202, 246, 350, 370 |
| TseI | GCWGC | 1 cut(s) | 15 |
| TspDTI | ATGAA | 1 cut(s) | 35 |
| XapI | RAATTY | 1 cut(s) | 350 |
| XceI | RCATGY | 1 cut(s) | 164 |
| XspI | CTAG | 1 cut(s) | 405 |