Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0473261 RchiOBHm_Chr3g0473321 |
| rosa_laevigata | RLG00000024008 |
| rosa_multiflora | Rmu_sc0000908.1_g000015 |
| rosa_roxburghii | Rroxscaffold_6G00408160 |
| rosa_samantha | Rh3BG210600 Rh3BG210900 Rh3DG207800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 116 |
| AcsI | RAATTY | 1 cut(s) | 184 |
| AfaI | GTAC | 1 cut(s) | 322 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 69 |
| AgsI | TTSAA | 1 cut(s) | 189 |
| AjnI | CCWGG | 1 cut(s) | 13 |
| AluBI | AGCT | 3 cut(s) | 137, 199, 291 |
| AluI | AGCT | 3 cut(s) | 137, 199, 291 |
| Alw26I | GTCTC | 1 cut(s) | 78 |
| AlwI | GGATC | 1 cut(s) | 116 |
| ApoI | RAATTY | 1 cut(s) | 184 |
| AspLEI | GCGC | 1 cut(s) | 241 |
| AsuHPI | GGTGA | 1 cut(s) | 197 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 186, 218 |
| BbsI | GAAGAC | 1 cut(s) | 107 |
| BccI | CCATC | 1 cut(s) | 216 |
| BciT130I | CCWGG | 1 cut(s) | 15 |
| BcoDI | GTCTC | 1 cut(s) | 78 |
| BglII | AGATCT | 1 cut(s) | 157 |
| Bme1390I | CCNGG | 1 cut(s) | 15 |
| BmiI | GGNNCC | 1 cut(s) | 61 |
| BmrFI | CCNGG | 1 cut(s) | 15 |
| BpiI | GAAGAC | 1 cut(s) | 107 |
| BsaI | GGTCTC | 1 cut(s) | 78 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 69 |
| BseBI | CCWGG | 1 cut(s) | 15 |
| BseGI | GGATG | 1 cut(s) | 76 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BseMII | CTCAG | 1 cut(s) | 95 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BsmAI | GTCTC | 1 cut(s) | 78 |
| Bso31I | GGTCTC | 1 cut(s) | 78 |
| Bsp143I | GATC | 2 cut(s) | 121, 157 |
| BspCNI | CTCAG | 1 cut(s) | 94 |
| BspHI | TCATGA | 1 cut(s) | 169 |
| BspLI | GGNNCC | 1 cut(s) | 61 |
| BspPI | GGATC | 1 cut(s) | 116 |
| BspTNI | GGTCTC | 1 cut(s) | 78 |
| BssMI | GATC | 2 cut(s) | 121, 157 |
| Bst2UI | CCWGG | 1 cut(s) | 15 |
| BstC8I | GCNNGC | 1 cut(s) | 251 |
| BstDEI | CTNAG | 2 cut(s) | 81, 330 |
| BstF5I | GGATG | 1 cut(s) | 76 |
| BstHHI | GCGC | 1 cut(s) | 241 |
| BstKTI | GATC | 2 cut(s) | 124, 160 |
| BstMAI | GTCTC | 1 cut(s) | 78 |
| BstMBI | GATC | 2 cut(s) | 121, 157 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 302 |
| BstNI | CCWGG | 1 cut(s) | 15 |
| BstNSI | RCATGY | 1 cut(s) | 253 |
| BstSCI | CCNGG | 1 cut(s) | 13 |
| BstV2I | GAAGAC | 1 cut(s) | 107 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| BtsCI | GGATG | 1 cut(s) | 76 |
| Cac8I | GCNNGC | 1 cut(s) | 251 |
| CciI | TCATGA | 1 cut(s) | 169 |
| CfoI | GCGC | 1 cut(s) | 241 |
| Csp6I | GTAC | 1 cut(s) | 321 |
| CviAII | CATG | 2 cut(s) | 170, 250 |
| CviJI | RGCY | 5 cut(s) | 62, 137, 199, 265, 291 |
| CviKI_1 | RGCY | 5 cut(s) | 62, 137, 199, 265, 291 |
| CviQI | GTAC | 1 cut(s) | 321 |
| DdeI | CTNAG | 2 cut(s) | 81, 330 |
| DpnI | GATC | 2 cut(s) | 123, 159 |
| DpnII | GATC | 2 cut(s) | 121, 157 |
| Eco31I | GGTCTC | 1 cut(s) | 78 |
| Eco32I | GATATC | 1 cut(s) | 143 |
| EcoRII | CCWGG | 1 cut(s) | 13 |
| EcoRV | GATATC | 1 cut(s) | 143 |
| FaeI | CATG | 2 cut(s) | 173, 253 |
| FaiI | YATR | 8 cut(s) | 21, 97, 99, 171, 176, 213, 251, 287 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 238, 270, 280, 312 |
| FatI | CATG | 2 cut(s) | 169, 249 |
| FokI | GGATG | 1 cut(s) | 63 |
| GlaI | GCGC | 1 cut(s) | 240 |
| HhaI | GCGC | 1 cut(s) | 241 |
| Hin1II | CATG | 2 cut(s) | 173, 253 |
| Hin6I | GCGC | 1 cut(s) | 239 |
| HinP1I | GCGC | 1 cut(s) | 239 |
| HincII | GTYRAC | 1 cut(s) | 31 |
| HindII | GTYRAC | 1 cut(s) | 31 |
| HphI | GGTGA | 1 cut(s) | 197 |
| Hpy166II | GTNNAC | 1 cut(s) | 31 |
| Hpy188I | TCNGA | 2 cut(s) | 84, 126 |
| Hpy188III | TCNNGA | 2 cut(s) | 119, 170 |
| Hpy8I | GTNNAC | 1 cut(s) | 31 |
| HpyAV | CCTTC | 1 cut(s) | 264 |
| HpyCH4V | TGCA | 2 cut(s) | 233, 313 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 302 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 330 |
| Hsp92II | CATG | 2 cut(s) | 173, 253 |
| HspAI | GCGC | 1 cut(s) | 239 |
| Kzo9I | GATC | 2 cut(s) | 121, 157 |
| LmnI | GCTCC | 1 cut(s) | 59 |
| LpnPI | CCDG | 3 cut(s) | 27, 123, 243 |
| MalI | GATC | 2 cut(s) | 123, 159 |
| MboI | GATC | 2 cut(s) | 121, 157 |
| MboII | GAAGA | 8 cut(s) | 16, 77, 97, 107, 137, 158, 194, 289 |
| MfeI | CAATTG | 1 cut(s) | 228 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MluCI | AATT | 3 cut(s) | 8, 184, 228 |
| MnlI | CCTC | 2 cut(s) | 90, 213 |
| MslI | CAYNNNNRTG | 1 cut(s) | 213 |
| MspR9I | CCNGG | 1 cut(s) | 15 |
| MunI | CAATTG | 1 cut(s) | 228 |
| MvaI | CCWGG | 1 cut(s) | 15 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 302 |
| NdeII | GATC | 2 cut(s) | 121, 157 |
| NlaIII | CATG | 2 cut(s) | 173, 253 |
| NlaIV | GGNNCC | 1 cut(s) | 61 |
| NspI | RCATGY | 1 cut(s) | 253 |
| PaeI | GCATGC | 1 cut(s) | 253 |
| PagI | TCATGA | 1 cut(s) | 169 |
| Psp6I | CCWGG | 1 cut(s) | 13 |
| PspGI | CCWGG | 1 cut(s) | 13 |
| PspN4I | GGNNCC | 1 cut(s) | 61 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 322 |
| RsaNI | GTAC | 1 cut(s) | 321 |
| RseI | CAYNNNNRTG | 1 cut(s) | 213 |
| Sau3AI | GATC | 2 cut(s) | 121, 157 |
| ScrFI | CCNGG | 1 cut(s) | 15 |
| SetI | ASST | 4 cut(s) | 139, 195, 201, 293 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 213 |
| SphI | GCATGC | 1 cut(s) | 253 |
| Sse9I | AATT | 3 cut(s) | 8, 184, 228 |
| StyD4I | CCNGG | 1 cut(s) | 13 |
| TasI | AATT | 3 cut(s) | 8, 184, 228 |
| TatI | WGTACW | 1 cut(s) | 320 |
| TspDTI | ATGAA | 2 cut(s) | 17, 158 |
| XapI | RAATTY | 1 cut(s) | 184 |
| XceI | RCATGY | 1 cut(s) | 253 |