RLG00000024212

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0019033
Physical Location & Seq
Forward (+)
33152367 .. 33153279
913 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024212

Sequence Viewer

Length: 375 bp
ATGGGCATGTGGATCGGTGTGTATTTGATCATTATTTTCGCTATCTATCACGGGCGCTCGACAAAGACTCATCTTAATCCAGGTAGCAATATTTTGGATGAGAATTTGAAGGCAGGAATCAGAATGTGCTCGGCAGTCATGTTGCTGATCACTTCTCTAATTGCGGGTGCAATTGTTGTGCATTTTCTGGAGGGTTTGAGCTTGGTTGAGTCACTCATGTTGTCTGTGGGATATGGAAACCTCTCTTTCAAAACCGATACCGGGAGGCTTTTTGCATTTGTTTGGATGCTCTTGAGTGTAACATGTTTCTCCAGAACTGTCCGCCGTGTCGTGGACTATTCATATTTTGTGTATGGGGATTTGTTCGGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

125

Amino Acids

13.86

Weight (kDa)

8.64

Isoelectric Point (pI)

14.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 49 - 113 6.8e-09 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019033)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226951
rosa_laevigata RLG00000024212
rosa_multiflora Rmu_ssc0000050.1_g000024
rosa_roxburghii Rroxscaffold_3G00232380 Rroxscaffold_6G00391000
rosa_samantha Rh6AG105200 Rh7AG388900 Rh7CG408100 Rh7DG386900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 164, 322
AclWI GGATC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 2 cut(s) 261, 331
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 2 cut(s) 109, 250
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 131
AlwI GGATC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 103
AspLEI GCGC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 309
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 81
BclI TGATCA 2 cut(s) 27, 147
BcnI CCSGG 1 cut(s) 262
BfoI RGCGCY 1 cut(s) 58
Bme1390I CCNGG 2 cut(s) 81, 262
BmrFI CCNGG 2 cut(s) 81, 262
BmsI GCATC 1 cut(s) 276
BpmI CTGGAG 2 cut(s) 209, 295
BpuEI CTTGAG 1 cut(s) 313
BpuMI CCSGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 331
BseBI CCWGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 103, 291
BseLI CCNNNNNNNGG 2 cut(s) 261, 331
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 2 cut(s) 261, 331
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 3 cut(s) 12, 27, 147
BspACI CCGC 2 cut(s) 164, 322
BspPI GGATC 1 cut(s) 20
BssMI GATC 3 cut(s) 12, 27, 147
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 319
BstF5I GGATG 2 cut(s) 103, 291
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 3 cut(s) 15, 30, 150
BstMBI GATC 3 cut(s) 12, 27, 147
BstNI CCWGG 1 cut(s) 81
BstNSI RCATGY 2 cut(s) 10, 306
BstSCI CCNGG 2 cut(s) 79, 260
BtsCI GGATG 2 cut(s) 103, 291
CfoI GCGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 370
CviAII CATG 4 cut(s) 7, 139, 217, 303
CviJI RGCY 2 cut(s) 201, 268
CviKI_1 RGCY 2 cut(s) 201, 268
CviQI GTAC 1 cut(s) 370
DpnI GATC 3 cut(s) 14, 29, 149
DpnII GATC 3 cut(s) 12, 27, 147
EciI GGCGGA 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 79
FaeI CATG 4 cut(s) 10, 142, 220, 306
FaiI YATR 7 cut(s) 8, 140, 218, 234, 304, 343, 354
FatI CATG 4 cut(s) 6, 138, 216, 302
FauI CCCGC 1 cut(s) 157
FbaI TGATCA 2 cut(s) 27, 147
FokI GGATG 2 cut(s) 110, 298
GlaI GCGC 1 cut(s) 56
GsuI CTGGAG 2 cut(s) 209, 295
HaeII RGCGCY 1 cut(s) 58
HapII CCGG 1 cut(s) 261
HhaI GCGC 1 cut(s) 57
Hin1II CATG 4 cut(s) 10, 142, 220, 306
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 3 cut(s) 67, 117, 209
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 122
Hpy188III TCNNGA 3 cut(s) 188, 292, 312
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 170, 181, 275
Hsp92II CATG 4 cut(s) 10, 142, 220, 306
HspAI GCGC 1 cut(s) 55
Ksp22I TGATCA 2 cut(s) 27, 147
Kzo9I GATC 3 cut(s) 12, 27, 147
LpnPI CCDG 6 cut(s) 66, 93, 99, 173, 274, 325
LweI GCATC 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 210, 298
MalI GATC 3 cut(s) 14, 29, 149
MboI GATC 3 cut(s) 12, 27, 147
MfeI CAATTG 1 cut(s) 171
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 3 cut(s) 103, 159, 171
MlyI GAGTC 2 cut(s) 61, 218
MnlI CCTC 3 cut(s) 184, 251, 258
MseI TTAA 1 cut(s) 75
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 81, 262
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 81
NciI CCSGG 1 cut(s) 262
NdeII GATC 3 cut(s) 12, 27, 147
NlaIII CATG 4 cut(s) 10, 142, 220, 306
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 210
NspI RCATGY 2 cut(s) 10, 306
PciI ACATGT 1 cut(s) 302
PfeI GAWTC 1 cut(s) 117
PleI GAGTC 2 cut(s) 61, 217
PpsI GAGTC 2 cut(s) 61, 217
PscI ACATGT 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 79
PspGI CCWGG 1 cut(s) 79
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SaqAI TTAA 1 cut(s) 75
Sau3AI GATC 3 cut(s) 12, 27, 147
SchI GAGTC 2 cut(s) 61, 218
ScrFI CCNGG 2 cut(s) 81, 262
SduI GDGCHC 1 cut(s) 131
SetI ASST 3 cut(s) 85, 203, 243
SfaNI GCATC 1 cut(s) 276
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 3 cut(s) 103, 159, 171
SsiI CCGC 2 cut(s) 164, 322
SspI AATATT 1 cut(s) 91
StyD4I CCNGG 2 cut(s) 79, 260
TaaI ACNGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 59
TasI AATT 3 cut(s) 103, 159, 171
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseFI GTSAC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 330
XapI RAATTY 1 cut(s) 103
XceI RCATGY 2 cut(s) 10, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.