Rh6AG105200

Ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019033
Physical Location & Seq
Forward (+)
15522425 .. 15525633
3209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG105200.1

Sequence Viewer

Length: 333 bp
ATGTTGGGTGTGTATTTCTTAACCGGGTCGGTTATCCTCTTCAAGTTAGGAGTCTTCAAACTGACTCTCAAATCCAATTCTCGAGAGGTAGGAATCAAAGTCCGCAGGACAACTCGTACGCTCATCGCTTGTCTTATCGTAGGTGCTTTCGTGTTACAGCTCCTAGAGGGTATCAGCTCCAGGGATTTCTTTTATTTCTTCATGGGCTGTGGAGATATTTCTCCCAAAACAGACAAGGGCAGGTGGTTTGCAAGCTTTTGGATACTTGTCAGTGTATCACTGCTTTCCAAGGCTGTTCGCCACATGATTGAGTTTGTACTTGTCAGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

110

Amino Acids

12.39

Weight (kDa)

10.11

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 41 - 106 6.5e-06 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019033)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226951
rosa_laevigata RLG00000024212
rosa_multiflora Rmu_ssc0000050.1_g000024
rosa_roxburghii Rroxscaffold_3G00232380 Rroxscaffold_6G00391000
rosa_samantha Rh6AG105200 Rh7AG388900 Rh7CG408100 Rh7DG386900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 231
Acc36I ACCTGC 1 cut(s) 231
AciI CCGC 1 cut(s) 103
AfaI GTAC 2 cut(s) 118, 318
AgsI TTSAA 2 cut(s) 43, 58
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 3 cut(s) 160, 177, 255
AluI AGCT 3 cut(s) 160, 177, 255
Ama87I CYCGRG 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 46
BciT130I CCWGG 1 cut(s) 181
BciVI GTATCC 1 cut(s) 255
BcnI CCSGG 1 cut(s) 25
BfaI CTAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 231
BfuI GTATCC 1 cut(s) 255
Bme1390I CCNGG 2 cut(s) 25, 181
BmeT110I CYCGRG 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 25, 181
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 180, 288
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 180, 288
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 24
BsiWI CGTACG 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 81
BspACI CCGC 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 231
BssECI CCNNGG 2 cut(s) 180, 288
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 253
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 2 cut(s) 23, 179
BstV2I GAAGAC 1 cut(s) 46
BsuI GTATCC 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 3 cut(s) 277, 278, 331
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 117, 317
CviAII CATG 2 cut(s) 202, 304
CviJI RGCY 5 cut(s) 160, 177, 207, 255, 293
CviKI_1 RGCY 5 cut(s) 160, 177, 207, 255, 293
CviQI GTAC 2 cut(s) 117, 317
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 205, 307
FaiI YATR 2 cut(s) 203, 305
FatI CATG 2 cut(s) 201, 303
FspBI CTAG 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 163
HapII CCGG 1 cut(s) 24
Hin1II CATG 2 cut(s) 205, 307
HindIII AAGCTT 1 cut(s) 253
HinfI GANTC 3 cut(s) 51, 64, 93
HpaII CCGG 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 81, 83
HpyCH4V TGCA 1 cut(s) 251
Hsp92II CATG 2 cut(s) 205, 307
LmnI GCTCC 2 cut(s) 165, 182
LpnPI CCDG 5 cut(s) 37, 91, 166, 193, 226
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 153
MboII GAAGA 3 cut(s) 31, 46, 190
MluCI AATT 1 cut(s) 76
MlyI GAGTC 2 cut(s) 58, 60
MnlI CCTC 3 cut(s) 47, 79, 160
MseI TTAA 2 cut(s) 20, 331
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 2 cut(s) 25, 181
MvaI CCWGG 1 cut(s) 181
NciI CCSGG 1 cut(s) 25
NlaIII CATG 2 cut(s) 205, 307
PaeR7I CTCGAG 1 cut(s) 81
PaqCI CACCTGC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 93
Pfl23II CGTACG 1 cut(s) 116
PleI GAGTC 2 cut(s) 58, 59
PpsI GAGTC 2 cut(s) 58, 59
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspLI CGTACG 1 cut(s) 116
RsaI GTAC 2 cut(s) 118, 318
RsaNI GTAC 2 cut(s) 117, 317
SaqAI TTAA 2 cut(s) 20, 331
SchI GAGTC 2 cut(s) 58, 60
ScrFI CCNGG 2 cut(s) 25, 181
SetI ASST 6 cut(s) 90, 145, 162, 179, 245, 257
Sfr274I CTCGAG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 1 cut(s) 76
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 2 cut(s) 23, 179
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 1 cut(s) 82
TasI AATT 1 cut(s) 76
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 20, 331
Tru9I TTAA 2 cut(s) 20, 331
TscAI CASTG 3 cut(s) 277, 285, 331
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 3 cut(s) 277, 285, 331
XhoI CTCGAG 1 cut(s) 81
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.