Rh7CG408100

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019033
Physical Location & Seq
Forward (+)
52401114 .. 52403425
2312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG408100.1

Sequence Viewer

Length: 333 bp
ATGTTGGGTGTGTATTTCTTAACCGGGTCGGTCATCCTCTTCAAGTTAGGAGTCTTCAAACTGACTCTCAAATCCAATTCTCGAGAGGTAGGAATCAAAGTCCGCAGGACAACTCGTGCGCTCATCGCTTGTCTTATCGTAGGTGCTTTCGTGTTACAGCTCCTAGAGGGTATCAGCTCCAGTGATTTCTTTTATTTCTTCATGGGCTGTGGAGATATTTCTCCCAAAACAGACAAGGGCAGGTGGTTTGCAAGCTTTTGGATACTTGTCAGTGTATCACTGCTTTCCAAGGCTGTTCGCCACATGATTGAGTTTGTACTTGTCAGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

110

Amino Acids

12.29

Weight (kDa)

9.93

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 41 - 106 1.6e-06 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019033)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226951
rosa_laevigata RLG00000024212
rosa_multiflora Rmu_ssc0000050.1_g000024
rosa_roxburghii Rroxscaffold_3G00232380 Rroxscaffold_6G00391000
rosa_samantha Rh6AG105200 Rh7AG388900 Rh7CG408100 Rh7DG386900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 231
Acc36I ACCTGC 1 cut(s) 231
AciI CCGC 1 cut(s) 103
AfaI GTAC 1 cut(s) 318
AgsI TTSAA 2 cut(s) 43, 58
AluBI AGCT 3 cut(s) 160, 177, 255
AluI AGCT 3 cut(s) 160, 177, 255
Ama87I CYCGRG 1 cut(s) 81
AspLEI GCGC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 81
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 46
BciVI GTATCC 1 cut(s) 255
BcnI CCSGG 1 cut(s) 25
BfaI CTAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 231
BfuI GTATCC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 25
BmeT110I CYCGRG 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 81
BspACI CCGC 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 231
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 288
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 253
BstF5I GGATG 1 cut(s) 33
BstHHI GCGC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 46
BsuI GTATCC 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 4 cut(s) 187, 277, 278, 331
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 253
CfoI GCGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 317
CviAII CATG 2 cut(s) 202, 304
CviJI RGCY 5 cut(s) 160, 177, 207, 255, 293
CviKI_1 RGCY 5 cut(s) 160, 177, 207, 255, 293
CviQI GTAC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 205, 307
FaiI YATR 2 cut(s) 203, 305
FatI CATG 2 cut(s) 201, 303
FokI GGATG 1 cut(s) 20
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 163
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 205, 307
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 253
HinfI GANTC 3 cut(s) 51, 64, 93
HpaII CCGG 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 81, 83
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
Hsp92II CATG 2 cut(s) 205, 307
HspAI GCGC 1 cut(s) 119
LmnI GCTCC 2 cut(s) 165, 182
LpnPI CCDG 4 cut(s) 37, 91, 193, 226
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 153
MboII GAAGA 3 cut(s) 31, 46, 190
MluCI AATT 1 cut(s) 76
MlyI GAGTC 2 cut(s) 58, 60
MnlI CCTC 3 cut(s) 47, 79, 160
MseI TTAA 2 cut(s) 20, 331
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 125
NciI CCSGG 1 cut(s) 25
NlaIII CATG 2 cut(s) 205, 307
PaeR7I CTCGAG 1 cut(s) 81
PaqCI CACCTGC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 93
PleI GAGTC 2 cut(s) 58, 59
PpsI GAGTC 2 cut(s) 58, 59
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 20, 331
SchI GAGTC 2 cut(s) 58, 60
ScrFI CCNGG 1 cut(s) 25
SetI ASST 6 cut(s) 90, 145, 162, 179, 245, 257
Sfr274I CTCGAG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 1 cut(s) 76
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 1 cut(s) 82
TaqII GACCGA 1 cut(s) 19
TasI AATT 1 cut(s) 76
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 20, 331
Tru9I TTAA 2 cut(s) 20, 331
TscAI CASTG 4 cut(s) 187, 277, 285, 331
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 4 cut(s) 187, 277, 285, 331
XhoI CTCGAG 1 cut(s) 81
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.