Rroxscaffold_6G00391000

Potassium channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019033
Physical Location & Seq
Forward (+)
7160876 .. 7161211
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00391000.1

Sequence Viewer

Length: 336 bp
ATGTTGGGTGTGTATTTCTTAATCGGGTCGGTCATTCTCTTCAAGTTAGGAGGCTTCAAACTGACTCTCAAATCCAATTCTCGAGAGGTAGGAATCAAAGTCCGCAGGACAACTCGTGCGCTCATCGCTTGTCTTATCATAGGTGCTTTCGTGTTACAGCTCCTAGAGGGTACCAGCTCCAGGGATTTCTTTTATTTCTTCATGGGCTGTGGAGATATTTCTCCCAAAACAGATAAGGGCAGGTGGTTTGCCAGCTTTTGGATACTTGTCAGCGTATCACTGCTTTCCAAGGCTGTTCGCCACATGATTGATTTTGTACTTGTCAGTTTAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

111

Amino Acids

12.49

Weight (kDa)

10.29

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 41 - 106 5.3e-06 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019033)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226951
rosa_laevigata RLG00000024212
rosa_multiflora Rmu_ssc0000050.1_g000024
rosa_roxburghii Rroxscaffold_3G00232380 Rroxscaffold_6G00391000
rosa_samantha Rh6AG105200 Rh7AG388900 Rh7CG408100 Rh7DG386900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 231
Acc36I ACCTGC 1 cut(s) 231
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 1 cut(s) 258
AciI CCGC 1 cut(s) 103
AfaI GTAC 2 cut(s) 172, 318
AfiI CCNNNNNNNGG 2 cut(s) 180, 258
AgsI TTSAA 2 cut(s) 43, 58
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 3 cut(s) 160, 177, 255
AluI AGCT 3 cut(s) 160, 177, 255
Ama87I CYCGRG 1 cut(s) 81
Asp718I GGTACC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 81
BanI GGYRCC 1 cut(s) 170
BauI CACGAG 1 cut(s) 114
BciT130I CCWGG 1 cut(s) 181
BciVI GTATCC 1 cut(s) 255
BfaI CTAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 231
BfuI GTATCC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 81
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 180, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 180, 258
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 180, 288
BseLI CCNNNNNNNGG 2 cut(s) 180, 258
BshNI GGYRCC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 180, 258
BsoBI CYCGRG 1 cut(s) 81
BspACI CCGC 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 172
BspMI ACCTGC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 180, 288
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 253
BstHHI GCGC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BsuI GTATCC 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 278
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 253
CfoI GCGC 1 cut(s) 121
Csp6I GTAC 2 cut(s) 171, 317
CviAII CATG 2 cut(s) 202, 304
CviJI RGCY 6 cut(s) 54, 160, 177, 207, 255, 293
CviKI_1 RGCY 6 cut(s) 54, 160, 177, 207, 255, 293
CviQI GTAC 2 cut(s) 171, 317
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 205, 307
FaiI YATR 3 cut(s) 140, 203, 305
FatI CATG 2 cut(s) 201, 303
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 163
HhaI GCGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 205, 307
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 2 cut(s) 64, 93
Hpy188III TCNNGA 2 cut(s) 81, 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
Hsp92II CATG 2 cut(s) 205, 307
HspAI GCGC 1 cut(s) 119
KpnI GGTACC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 165, 182
LpnPI CCDG 6 cut(s) 91, 166, 187, 193, 226, 265
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 153
MboII GAAGA 2 cut(s) 31, 190
MluCI AATT 1 cut(s) 76
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 3 cut(s) 44, 79, 160
MseI TTAA 2 cut(s) 20, 329
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 125
NlaIII CATG 2 cut(s) 205, 307
NlaIV GGNNCC 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 81
PaqCI CACCTGC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 258
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 172
RsaI GTAC 2 cut(s) 172, 318
RsaNI GTAC 2 cut(s) 171, 317
SaqAI TTAA 2 cut(s) 20, 329
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 181
SetI ASST 7 cut(s) 90, 145, 162, 179, 245, 257, 335
Sfr274I CTCGAG 1 cut(s) 81
SlaI CTCGAG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 1 cut(s) 76
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 288
TaqI TCGA 1 cut(s) 82
TaqII GACCGA 1 cut(s) 19
TasI AATT 1 cut(s) 76
TatI WGTACW 1 cut(s) 316
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 20, 329
Tru9I TTAA 2 cut(s) 20, 329
TscAI CASTG 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 1 cut(s) 285
Van91I CCANNNNNTGG 1 cut(s) 258
XhoI CTCGAG 1 cut(s) 81
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.