Rroxscaffold_3G00232380

Ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019033
Physical Location & Seq
Reverse (-)
18038452 .. 18040000
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232380.1

Sequence Viewer

Length: 348 bp
ATGTTGGGTGTGTATTTCTTAACTGGGTCGGTCATCCTCTTCAATTTAGGAGGCTTCAAACTGACTCTCAAATCCGATTCTCAAGAGGTAGGAATCAAAGTCCGCAGGACAACTGGTGCACTCATCGCTTGTCTTATCGTAGGTGCTTTCGTGTTACATCTCTTAGAGGGTATCAGCTCCAGGGATTTCTTTTATTTCTTCATGGGCTGTGGAGATATTTCTCCCAAAACAGATAAGGGCAGGTGGTTTGCAAGCTTTTGGATACTTGTCGGCGTTTCACTGCTGTCCAAGGCTGTTCGCCACATGATTGAGTTTGCAATTGTCAGTTTAAGAGACAATAGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ion_trans_2

Protein Analysis

115

Amino Acids

12.84

Weight (kDa)

9.83

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans_2 PF07885 41 - 105 4.3e-07 Ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019033)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0226951
rosa_laevigata RLG00000024212
rosa_multiflora Rmu_ssc0000050.1_g000024
rosa_roxburghii Rroxscaffold_3G00232380 Rroxscaffold_6G00391000
rosa_samantha Rh6AG105200 Rh7AG388900 Rh7CG408100 Rh7DG386900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 231
Acc36I ACCTGC 1 cut(s) 231
AciI CCGC 1 cut(s) 103
AgsI TTSAA 2 cut(s) 43, 58
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 2 cut(s) 177, 255
AluI AGCT 2 cut(s) 177, 255
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 1 cut(s) 327
Alw44I GTGCAC 1 cut(s) 117
ApaLI GTGCAC 1 cut(s) 117
BaeGI GKGCMC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 181
BciVI GTATCC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 327
BfuAI ACCTGC 1 cut(s) 231
BfuI GTATCC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 181
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BpmI CTGGAG 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 180, 288
Bse1I ACTGG 2 cut(s) 28, 118
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 180, 288
BseGI GGATG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 28, 118
BseSI GKGCMC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 121
BspACI CCGC 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 231
BsrI ACTGG 2 cut(s) 28, 118
BssECI CCNNGG 2 cut(s) 180, 288
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 1 cut(s) 163
BstF5I GGATG 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 327
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstSLI GKGCMC 1 cut(s) 121
BsuI GTATCC 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 33
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 278
BveI ACCTGC 1 cut(s) 231
Cac8I GCNNGC 1 cut(s) 253
CviAII CATG 2 cut(s) 202, 304
CviJI RGCY 5 cut(s) 54, 177, 207, 255, 293
CviKI_1 RGCY 5 cut(s) 54, 177, 207, 255, 293
DdeI CTNAG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 288
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 2 cut(s) 205, 307
FaiI YATR 2 cut(s) 203, 305
FatI CATG 2 cut(s) 201, 303
FokI GGATG 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 163
Hin1II CATG 2 cut(s) 205, 307
HindIII AAGCTT 1 cut(s) 253
HinfI GANTC 3 cut(s) 64, 77, 93
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 119
HpyCH4V TGCA 3 cut(s) 119, 251, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 163
Hsp92II CATG 2 cut(s) 205, 307
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 6 cut(s) 9, 91, 99, 166, 193, 226
MaeIII GTNAC 1 cut(s) 153
MboII GAAGA 2 cut(s) 31, 190
MfeI CAATTG 1 cut(s) 318
MhlI GDGCHC 1 cut(s) 121
MluCI AATT 2 cut(s) 43, 318
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 4 cut(s) 44, 47, 79, 160
MseI TTAA 2 cut(s) 20, 329
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 125
NlaIII CATG 2 cut(s) 205, 307
PaqCI CACCTGC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 77, 93
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
SaqAI TTAA 2 cut(s) 20, 329
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 121
SetI ASST 5 cut(s) 90, 145, 179, 245, 257
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 2 cut(s) 43, 318
SsiI CCGC 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 179
StyI CCWWGG 1 cut(s) 288
TaqII GACCGA 1 cut(s) 19
TasI AATT 2 cut(s) 43, 318
TfiI GAWTC 2 cut(s) 77, 93
Tru1I TTAA 2 cut(s) 20, 329
Tru9I TTAA 2 cut(s) 20, 329
TscAI CASTG 1 cut(s) 285
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 1 cut(s) 285
VneI GTGCAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.