Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009355

Physical Location & Seq

Genomic Coordinates Forward (+)

41252612 .. 41264883

Gene Structure 12272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025004

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGTCAGAAGGTCTATCTTCTGTCATATATAAGGCCTTTGGAGAAGATTCATCATCAAGTTCAAAAAAATTTGAAGCTACTGTTACTCGCCTTCATCCATCCACTCAGGGTTTAAAGGAGTTTGTAAATGAGGTAAACACTGTTGCATCTTTGCAACATCCAAACCTCTGTAAATTGCTTGGTTTCCATGCACGCGAGGGATCAGAACAAAAAATGTTGGTCTATGAGAGGCTGTTTCATGGAAGTCTGGATCGGTTTTTATATGGACGATCAGATAAGCCCCCAATAGACTGGAATACAAGAACAAAAATTGCTTTATGTGCTGCACAGGGTCTTACATTCTTGCATGAAGAAGGACCTTTCCAGGCAATGTACAATGAGTTTTCAACTGCCAACATTCAGATTGATAAAGATTTTAGCGCAAAGCTTTCTGGATATGGCTGTGTTGGACATATTCCTGAGGCAGAAATCTCTACTAATTCTGTTGCAGTGGCAAATCTATCAGTTGAGACGCTTGAAAGAGGAATGCTTACTCCCAAAAGCAATGTCTGGAGTTTCGGGATTGTTCTTCTAGAACTACTTACAGGACGGAAGAATCTTGATAGCAGGCATCCCAAGGAAGAGATGAATTTAGTTAAGTGGAGCCGGCTTTACCTAGCTGATGATACGAGGCTGTCACTGATTATGGATCCTCAGCTGAAAGGCCGCTTCCCAGCCAAAGCTGCCCGAGCGGTGGCTGACATCGCGCAGAGATGCCTCCAGAAAGACCCATCCGAAAGACCCACCATGAGAACTGTTGTTGAGCATCTCAAGATCATTCAAGACATGAGGCACTCGTCCAGGTTTCCTTTGCAAGACCCTGCTTCATTTGCCGGAAAACAGATGTCAAGATCGCCGAGTCTGAACGGAATTGTCACCCCTGTGCCTAGGCTAAGTTTTTCTCCTTCACCTCCATCAATGGCTCGGCCATCTATTTCACCTACTAGACGACTTGCCCTGCCTATGTCTCTCCCTCCACGAGCTTGTTCCACCATTGTCACTATGGAGGAGCTAGACCACCTGCTGGAAAGCCGGAAATCATCATCATCTACGGTTCCAAGGGCTAGTGTTGAGGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

374

Amino Acids

41.43

Weight (kDa)

9.13

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 269	1.1e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 270	8.9e-27	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08760 AT3G08760 AT3G08760
fragaria_vesca	FvH4_6g09920
malus_domestica	MD04G1174400.v1.1 MD12G1188000.v1.1
prunus_persica	Prupe.6G293300_v2.0.a1
pyrus_communis	pycom04g15390 pycom12g17570
rosa_chinensis	RchiOBHm_Chr3g0460511
rosa_laevigata	RLG00000024998 RLG00000025004
rosa_multiflora	Rmu_sc0004267.1_g000004 Rmu_sc0006046.1_g000002 Rmu_sc0030082.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419420
rosa_rugosa	Rorug03G0043300
rosa_samantha	Rh3AG101300 Rh3BG105300 Rh3CG107100 Rh3DG106600
rosa_wichuraiana	Rw3G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1068
Acc36I	ACCTGC	1 cut(s)	1068
AccB7I	CCANNNNNTGG	1 cut(s)	1063
AccBSI	CCGCTC	1 cut(s)	731
AccII	CGCG	2 cut(s)	195, 746
AciI	CCGC	2 cut(s)	706, 731
AclWI	GGATC	4 cut(s)	208, 258, 683, 696
AcoI	YGGCCR	1 cut(s)	965
AcsI	RAATTY	2 cut(s)	68, 628
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	2 cut(s)	733, 1063
AgsI	TTSAA	5 cut(s)	63, 74, 387, 518, 821
AjnI	CCWGG	2 cut(s)	363, 839
AleI	CACNNNNGTG	1 cut(s)	920
AluBI	AGCT	7 cut(s)	77, 427, 659, 697, 722, 1022, 1051
AluI	AGCT	7 cut(s)	77, 427, 659, 697, 722, 1022, 1051
Alw26I	GTCTC	2 cut(s)	503, 1011
AlwI	GGATC	4 cut(s)	208, 258, 683, 696
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	3 cut(s)	33, 703, 965
ApeKI	GCWGC	2 cut(s)	323, 722
ApoI	RAATTY	2 cut(s)	68, 628
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
AspA2I	CCTAGG	1 cut(s)	926
AspLEI	GCGC	2 cut(s)	422, 748
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	3 cut(s)	907, 939, 969
AvaI	CYCGRG	1 cut(s)	726
AvaII	GGWCC	1 cut(s)	356
AvrII	CCTAGG	1 cut(s)	926
AxyI	CCTNAGG	1 cut(s)	459
BamHI	GGATCC	1 cut(s)	688
BauI	CACGAG	1 cut(s)	1017
BbvCI	CCTCAGC	1 cut(s)	693
BbvI	GCAGC	2 cut(s)	310, 709
BccI	CCATC	4 cut(s)	106, 778, 961, 976
BciT130I	CCWGG	2 cut(s)	365, 841
BcoDI	GTCTC	2 cut(s)	503, 1011
BfaI	CTAG	6 cut(s)	572, 656, 927, 984, 1052, 1104
BfuAI	ACCTGC	1 cut(s)	1068
BisI	GCNGC	3 cut(s)	324, 706, 723
BlnI	CCTAGG	1 cut(s)	926
BlsI	GCNGC	3 cut(s)	325, 707, 724
Bme1390I	CCNGG	2 cut(s)	365, 841
Bme18I	GGWCC	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	3 cut(s)	644, 690, 1095
BmrFI	CCNGG	2 cut(s)	365, 841
BmsI	GCATC	4 cut(s)	155, 619, 743, 814
BpmI	CTGGAG	2 cut(s)	571, 743
Bpu10I	CCTNAGC	1 cut(s)	693
BpuEI	CTTGAG	1 cut(s)	794
BsaJI	CCNNGG	3 cut(s)	615, 926, 1097
Bsc4I	CCNNNNNNNGG	2 cut(s)	733, 1063
Bse118I	RCCGGY	1 cut(s)	645
Bse1I	ACTGG	1 cut(s)	296
Bse21I	CCTNAGG	1 cut(s)	459
Bse3DI	GCAATG	2 cut(s)	375, 550
BseBI	CCWGG	2 cut(s)	365, 841
BseDI	CCNNGG	3 cut(s)	615, 926, 1097
BseGI	GGATG	5 cut(s)	94, 98, 157, 610, 770
BseLI	CCNNNNNNNGG	2 cut(s)	733, 1063
BseMI	GCAATG	2 cut(s)	375, 550
BseMII	CTCAG	3 cut(s)	119, 450, 707
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	1061
BseXI	GCAGC	2 cut(s)	310, 709
BseYI	CCCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	2 cut(s)	195, 746
BshFI	GGCC	3 cut(s)	35, 705, 967
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	3 cut(s)	646, 873, 1072
BslI	CCNNNNNNNGG	2 cut(s)	733, 1063
BsmAI	GTCTC	2 cut(s)	503, 1011
BsmBI	CGTCTC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	531
BsnI	GGCC	3 cut(s)	35, 705, 967
BsoBI	CYCGRG	1 cut(s)	726
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	6 cut(s)	200, 250, 269, 688, 813, 890
BspACI	CCGC	2 cut(s)	706, 731
BspANI	GGCC	3 cut(s)	35, 705, 967
BspCNI	CTCAG	3 cut(s)	118, 451, 706
BspFNI	CGCG	2 cut(s)	195, 746
BspLI	GGNNCC	3 cut(s)	644, 690, 1095
BspMI	ACCTGC	1 cut(s)	1068
BspPI	GGATC	4 cut(s)	208, 258, 683, 696
BsrBI	CCGCTC	1 cut(s)	731
BsrDI	GCAATG	2 cut(s)	375, 550
BsrFI	RCCGGY	1 cut(s)	645
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	645
BssECI	CCNNGG	3 cut(s)	615, 926, 1097
BssMI	GATC	6 cut(s)	200, 250, 269, 688, 813, 890
BssSI	CACGAG	1 cut(s)	1017
BssT1I	CCWWGG	3 cut(s)	615, 926, 1097
Bst2BI	CACGAG	1 cut(s)	1017
Bst2UI	CCWGG	2 cut(s)	365, 841
Bst4CI	ACNGT	4 cut(s)	82, 142, 796, 1093
Bst6I	CTCTTC	1 cut(s)	615
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	193, 608, 647
BstDEI	CTNAG	4 cut(s)	105, 459, 693, 932
BstF5I	GGATG	5 cut(s)	94, 98, 157, 610, 770
BstFNI	CGCG	2 cut(s)	195, 746
BstHHI	GCGC	2 cut(s)	422, 748
BstKTI	GATC	6 cut(s)	203, 253, 272, 691, 816, 893
BstMAI	GTCTC	2 cut(s)	503, 1011
BstMBI	GATC	6 cut(s)	200, 250, 269, 688, 813, 890
BstMWI	GCNNNNNNNGC	5 cut(s)	320, 722, 728, 743, 869
BstNI	CCWGG	2 cut(s)	365, 841
BstSCI	CCNGG	2 cut(s)	363, 839
BstUI	CGCG	2 cut(s)	195, 746
BstV1I	GCAGC	2 cut(s)	310, 709
BstX2I	RGATCY	1 cut(s)	688
BstXI	CCANNNNNNTGG	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	688
Bsu36I	CCTNAGG	1 cut(s)	459
BsuRI	GGCC	3 cut(s)	35, 705, 967
BtgZI	GCGATG	1 cut(s)	727
BtsCI	GGATG	5 cut(s)	94, 98, 157, 610, 770
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	3 cut(s)	138, 495, 677
BveI	ACCTGC	1 cut(s)	1068
Cac8I	GCNNGC	3 cut(s)	193, 608, 647
CfoI	GCGC	2 cut(s)	422, 748
Cfr10I	RCCGGY	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	356
CseI	GACGC	1 cut(s)	520
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	5 cut(s)	188, 239, 347, 787, 826
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	4 cut(s)	105, 459, 693, 932
DpnI	GATC	6 cut(s)	202, 252, 271, 690, 815, 892
DpnII	GATC	6 cut(s)	200, 250, 269, 688, 813, 890
DraI	TTTAAA	1 cut(s)	114
EaeI	YGGCCR	1 cut(s)	965
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco130I	CCWWGG	3 cut(s)	615, 926, 1097
Eco147I	AGGCCT	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	356
Eco81I	CCTNAGG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	726
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	363, 839
EcoT14I	CCWWGG	3 cut(s)	615, 926, 1097
ErhI	CCWWGG	3 cut(s)	615, 926, 1097
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	5 cut(s)	191, 242, 350, 790, 829
FatI	CATG	5 cut(s)	187, 238, 346, 786, 825
Fnu4HI	GCNGC	3 cut(s)	324, 706, 723
FokI	GGATG	5 cut(s)	81, 85, 144, 597, 757
Fsp4HI	GCNGC	3 cut(s)	324, 706, 723
FspBI	CTAG	6 cut(s)	572, 656, 927, 984, 1052, 1104
GlaI	GCGC	2 cut(s)	421, 747
GluI	GCNGC	3 cut(s)	324, 706, 723
GsaI	CCCAGC	1 cut(s)	716
GsuI	CTGGAG	2 cut(s)	571, 743
HaeIII	GGCC	3 cut(s)	35, 705, 967
HapII	CCGG	3 cut(s)	646, 873, 1072
HgaI	GACGC	1 cut(s)	520
HhaI	GCGC	2 cut(s)	422, 748
Hin1II	CATG	5 cut(s)	191, 242, 350, 790, 829
Hin6I	GCGC	2 cut(s)	420, 746
HinP1I	GCGC	2 cut(s)	420, 746
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	3 cut(s)	47, 595, 898
HpaII	CCGG	3 cut(s)	646, 873, 1072
HphI	GGTGA	3 cut(s)	907, 939, 969
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	6 cut(s)	7, 205, 274, 402, 775, 903
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	101, 347, 954
HpyCH4III	ACNGT	4 cut(s)	82, 142, 796, 1093
HpyCH4V	TGCA	7 cut(s)	146, 154, 191, 326, 346, 488, 853
HpyF10VI	GCNNNNNNNGC	5 cut(s)	320, 722, 728, 743, 869
HpyF3I	CTNAG	4 cut(s)	105, 459, 693, 932
Hsp92II	CATG	5 cut(s)	191, 242, 350, 790, 829
HspAI	GCGC	2 cut(s)	420, 746
KroI	GCCGGC	1 cut(s)	645
KroNI	GCCGGC	1 cut(s)	647
Kzo9I	GATC	6 cut(s)	200, 250, 269, 688, 813, 890
LmnI	GCTCC	2 cut(s)	642, 1048
Lsp1109I	GCAGC	2 cut(s)	310, 709
LweI	GCATC	4 cut(s)	155, 619, 743, 814
MaeI	CTAG	6 cut(s)	572, 656, 927, 984, 1052, 1104
MaeIII	GTNAC	4 cut(s)	82, 675, 913, 1036
MalI	GATC	6 cut(s)	202, 252, 271, 690, 815, 892
MbiI	CCGCTC	1 cut(s)	731
MboI	GATC	6 cut(s)	200, 250, 269, 688, 813, 890
MboII	GAAGA	6 cut(s)	9, 56, 362, 560, 604, 632
MflI	RGATCY	1 cut(s)	688
MluCI	AATT	6 cut(s)	68, 173, 309, 478, 628, 909
MlyI	GAGTC	1 cut(s)	907
MmeI	TCCRAC	1 cut(s)	427
MroNI	GCCGGC	1 cut(s)	645
MseI	TTAA	2 cut(s)	113, 636
MslI	CAYNNNNRTG	1 cut(s)	920
MspA1I	CMGCKG	1 cut(s)	697
MspI	CCGG	3 cut(s)	646, 873, 1072
MspR9I	CCNGG	2 cut(s)	365, 841
Mva1269I	GAATGC	1 cut(s)	531
MvaI	CCWGG	2 cut(s)	365, 841
MvnI	CGCG	2 cut(s)	195, 746
MwoI	GCNNNNNNNGC	5 cut(s)	320, 722, 728, 743, 869
NaeI	GCCGGC	1 cut(s)	647
NdeII	GATC	6 cut(s)	200, 250, 269, 688, 813, 890
NgoMIV	GCCGGC	1 cut(s)	645
NlaIII	CATG	5 cut(s)	191, 242, 350, 790, 829
NlaIV	GGNNCC	3 cut(s)	644, 690, 1095
NmeAIII	GCCGAG	2 cut(s)	921, 943
NmuCI	GTSAC	3 cut(s)	675, 913, 1036
OliI	CACNNNNGTG	1 cut(s)	920
PaqCI	CACCTGC	1 cut(s)	1068
PceI	AGGCCT	1 cut(s)	35
PctI	GAATGC	1 cut(s)	531
PdiI	GCCGGC	1 cut(s)	647
PfeI	GAWTC	2 cut(s)	47, 595
PflMI	CCANNNNNTGG	1 cut(s)	1063
PkrI	GCNGC	3 cut(s)	325, 707, 724
PleI	GAGTC	1 cut(s)	906
PpsI	GAGTC	1 cut(s)	906
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	363, 839
PspFI	CCCAGC	1 cut(s)	712
PspGI	CCWGG	2 cut(s)	363, 839
PspN4I	GGNNCC	3 cut(s)	644, 690, 1095
PspPI	GGNCC	1 cut(s)	356
PspPPI	RGGWCCY	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	697
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	920
SaqAI	TTAA	2 cut(s)	113, 636
SatI	GCNGC	3 cut(s)	324, 706, 723
Sau3AI	GATC	6 cut(s)	200, 250, 269, 688, 813, 890
Sau96I	GGNCC	1 cut(s)	356
SchI	GAGTC	1 cut(s)	907
ScrFI	CCNGG	2 cut(s)	365, 841
SfaNI	GCATC	4 cut(s)	155, 619, 743, 814
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	920
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
Sse9I	AATT	6 cut(s)	68, 173, 309, 478, 628, 909
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	2 cut(s)	706, 731
SspMI	CTAG	6 cut(s)	572, 656, 927, 984, 1052, 1104
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	363, 839
StyI	CCWWGG	3 cut(s)	615, 926, 1097
TaaI	ACNGT	4 cut(s)	82, 142, 796, 1093
TasI	AATT	6 cut(s)	68, 173, 309, 478, 628, 909
TatI	WGTACW	1 cut(s)	372
TauI	GCSGC	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	47, 595
Tru1I	TTAA	2 cut(s)	113, 636
Tru9I	TTAA	2 cut(s)	113, 636
TscAI	CASTG	3 cut(s)	145, 495, 684
TseFI	GTSAC	3 cut(s)	675, 913, 1036
TseI	GCWGC	2 cut(s)	323, 722
Tsp45I	GTSAC	3 cut(s)	675, 913, 1036
TspDTI	ATGAA	6 cut(s)	39, 83, 227, 363, 641, 855
TspGWI	ACGGA	2 cut(s)	604, 921
TspRI	CASTG	3 cut(s)	145, 495, 684
Van91I	CCANNNNNTGG	1 cut(s)	1063
VpaK11BI	GGWCC	1 cut(s)	356
XapI	RAATTY	2 cut(s)	68, 628
XbaI	TCTAGA	1 cut(s)	571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1039
XmaJI	CCTAGG	1 cut(s)	926
XspI	CTAG	6 cut(s)	572, 656, 927, 984, 1052, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.