Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009355

Physical Location & Seq

Genomic Coordinates Reverse (-)

7978665 .. 7982826

Gene Structure 4162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGCTTCTGGACCATTGCCCCTACCTCCTACTGGAACACTACGGAACTTTTCATATGAAGAAGTATCATCAGCTTGCCACAACTTTTCTTCTGACCGATGCATGTCAGAAGGTCTATCTTCCGTCATATATAAGGCTTCCTTTGGAGAAGATTCATCATCAAGTTTCAAAAAAATTTGAAGCTACTGTTACTCGCCTTCATCCATCCACTCAGGGTTTAAAGGAGTTTGTAAATGAGGTAAACACTGTTGCATCTTTGCAACATCCAAACCTCTGTAAATTGCTTGGTTTCCATGCACGAGAGGGATCAGAACAAAAAATGTTGGTCTATGAGAGGCTGTTTCATGGAAGTCTAGATCGGTTTTTATATGGACGATCAGATAAGCCCCCAATAGACTGGAATACAAGAACAAAAATTGCTTTATGTGCTGCACAGGGTCTTACATTCTTGCATGAAGAAGGACCTTTCCAGGCAATGTACAATGAGTTTTCAACTGCCAACATTCAGATTGATAAAGATTTTAGCGCAAAGCTTTCTGGATATGGCTGTGTTGGACATTTTCCTGAGGCAGAAATCTCTACTAATTCTGTTGCAGTGGCAAATCTATCAGTTGAGACGCTTGAAAGAGGAATGCTTACTCCCAAAAGCAATGTCTGGAGTTTCGGGATTGTTCTTCTAGAACTACTTACAGGACGGAAGAATCTTGATAGCCGGCATCCCAAGGAAGAGATGAATTTAGTTAAGTGGAGCCGGCTTTACCTAGCTGATGATACGCGGCTGTCACTGATTATGGATCCTCAGCTGAAAGGCCGCTTCCCAGCCAAAGCTGCCCGAGCGGTGGCTGACATTGCACGGGGATGCCTCCAGAAAGACCCATCCGAAAGACCCACCATGAGAACTGTTGTTGAGCATCTCAAGATCATTCAAGACATGAGGCACTCGTCCAGGTTTCCTTTGCAAGACCCTGCTTCATTTGCGGGAAAACAGATGTCAAGATCGCCAAGTCTTAACGGAATTGTCACCCCTGTGCCTAGGCTAAGTTTTTCTCCTTCACCTCCGTCAATGGCTCGGCCATCTATATCACCTACCAGACGACTTGCCCTGCCTATGTCTCTTCCTCCACGAGCTTGTTCCACCATTGTCACTATGGAGGAGCTAGACCACCTGCTGGAAAGCCGGAAATCATCATCATCTACGGTTCCAAGGGCTAGTGTTGAGGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

408

Amino Acids

45.93

Weight (kDa)

9.21

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	69 - 305	5.9e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	71 - 304	8.7e-24	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009355)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08760 AT3G08760 AT3G08760
fragaria_vesca	FvH4_6g09920
malus_domestica	MD04G1174400.v1.1 MD12G1188000.v1.1
prunus_persica	Prupe.6G293300_v2.0.a1
pyrus_communis	pycom04g15390 pycom12g17570
rosa_chinensis	RchiOBHm_Chr3g0460511
rosa_laevigata	RLG00000024998 RLG00000025004
rosa_multiflora	Rmu_sc0004267.1_g000004 Rmu_sc0006046.1_g000002 Rmu_sc0030082.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419420
rosa_rugosa	Rorug03G0043300
rosa_samantha	Rh3AG101300 Rh3BG105300 Rh3CG107100 Rh3DG106600
rosa_wichuraiana	Rw3G008620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1173
Acc36I	ACCTGC	1 cut(s)	1173
AccB7I	CCANNNNNTGG	1 cut(s)	1168
AccBSI	CCGCTC	1 cut(s)	836
AccII	CGCG	1 cut(s)	775
AciI	CCGC	4 cut(s)	775, 811, 836, 977
AclWI	GGATC	3 cut(s)	313, 788, 801
AcoI	YGGCCR	1 cut(s)	1070
AcsI	RAATTY	2 cut(s)	173, 733
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	3 cut(s)	31, 838, 1168
AgsI	TTSAA	5 cut(s)	168, 179, 492, 623, 926
AjnI	CCWGG	2 cut(s)	468, 944
AleI	CACNNNNGTG	1 cut(s)	1025
AluBI	AGCT	8 cut(s)	73, 182, 532, 764, 802, 827, 1127, 1156
AluI	AGCT	8 cut(s)	73, 182, 532, 764, 802, 827, 1127, 1156
Alw26I	GTCTC	2 cut(s)	608, 1116
AlwI	GGATC	3 cut(s)	313, 788, 801
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	2 cut(s)	808, 1070
ApeKI	GCWGC	2 cut(s)	428, 827
ApoI	RAATTY	2 cut(s)	173, 733
ArsI	GACNNNNNNTTYG	2 cut(s)	636, 668
AspA2I	CCTAGG	1 cut(s)	1031
AspLEI	GCGC	1 cut(s)	527
AspS9I	GGNCC	2 cut(s)	10, 461
AsuHPI	GGTGA	3 cut(s)	1012, 1044, 1074
AvaI	CYCGRG	1 cut(s)	831
AvaII	GGWCC	2 cut(s)	10, 461
AvrII	CCTAGG	1 cut(s)	1031
AxyI	CCTNAGG	1 cut(s)	564
BamHI	GGATCC	1 cut(s)	793
BauI	CACGAG	2 cut(s)	297, 1122
BbvCI	CCTCAGC	1 cut(s)	798
BbvI	GCAGC	2 cut(s)	415, 814
BccI	CCATC	3 cut(s)	211, 883, 1081
BciT130I	CCWGG	2 cut(s)	470, 946
BcoDI	GTCTC	2 cut(s)	608, 1116
BfaI	CTAG	6 cut(s)	353, 677, 761, 1032, 1157, 1209
BfuAI	ACCTGC	1 cut(s)	1173
BisI	GCNGC	4 cut(s)	429, 776, 811, 828
BlnI	CCTAGG	1 cut(s)	1031
BlsI	GCNGC	4 cut(s)	430, 777, 812, 829
Bme1390I	CCNGG	2 cut(s)	470, 946
Bme18I	GGWCC	2 cut(s)	10, 461
BmeT110I	CYCGRG	1 cut(s)	831
BmgT120I	GGNCC	2 cut(s)	10, 461
BmiI	GGNNCC	3 cut(s)	749, 795, 1200
BmrFI	CCNGG	2 cut(s)	470, 946
BmsI	GCATC	5 cut(s)	88, 260, 724, 848, 919
BpmI	CTGGAG	2 cut(s)	676, 848
Bpu10I	CCTNAGC	1 cut(s)	798
BpuEI	CTTGAG	1 cut(s)	899
BsaJI	CCNNGG	3 cut(s)	720, 1031, 1202
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 838, 1168
Bse118I	RCCGGY	2 cut(s)	711, 750
Bse1I	ACTGG	2 cut(s)	36, 401
Bse21I	CCTNAGG	1 cut(s)	564
Bse3DI	GCAATG	4 cut(s)	13, 480, 655, 846
BseBI	CCWGG	2 cut(s)	470, 946
BseDI	CCNNGG	3 cut(s)	720, 1031, 1202
BseGI	GGATG	6 cut(s)	199, 203, 262, 715, 863, 875
BseLI	CCNNNNNNNGG	3 cut(s)	31, 838, 1168
BseMI	GCAATG	4 cut(s)	13, 480, 655, 846
BseMII	CTCAG	3 cut(s)	224, 555, 812
BseNI	ACTGG	2 cut(s)	36, 401
BseRI	GAGGAG	1 cut(s)	1166
BseXI	GCAGC	2 cut(s)	415, 814
BseYI	CCCAGC	1 cut(s)	817
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	775
BshFI	GGCC	2 cut(s)	810, 1072
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	3 cut(s)	712, 751, 1177
BslI	CCNNNNNNNGG	3 cut(s)	31, 838, 1168
BsmAI	GTCTC	2 cut(s)	608, 1116
BsmBI	CGTCTC	1 cut(s)	608
BsmI	GAATGC	1 cut(s)	636
BsnI	GGCC	2 cut(s)	810, 1072
BsoBI	CYCGRG	1 cut(s)	831
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	6 cut(s)	305, 355, 374, 793, 918, 995
BspACI	CCGC	4 cut(s)	775, 811, 836, 977
BspANI	GGCC	2 cut(s)	810, 1072
BspCNI	CTCAG	3 cut(s)	223, 556, 811
BspFNI	CGCG	1 cut(s)	775
BspLI	GGNNCC	3 cut(s)	749, 795, 1200
BspMI	ACCTGC	1 cut(s)	1173
BspPI	GGATC	3 cut(s)	313, 788, 801
BsrBI	CCGCTC	1 cut(s)	836
BsrDI	GCAATG	4 cut(s)	13, 480, 655, 846
BsrFI	RCCGGY	2 cut(s)	711, 750
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	36, 401
BssAI	RCCGGY	2 cut(s)	711, 750
BssECI	CCNNGG	3 cut(s)	720, 1031, 1202
BssMI	GATC	6 cut(s)	305, 355, 374, 793, 918, 995
BssSI	CACGAG	2 cut(s)	297, 1122
BssT1I	CCWWGG	3 cut(s)	720, 1031, 1202
Bst2BI	CACGAG	2 cut(s)	297, 1122
Bst2UI	CCWGG	2 cut(s)	470, 946
Bst4CI	ACNGT	4 cut(s)	187, 247, 901, 1198
Bst6I	CTCTTC	2 cut(s)	720, 1119
BstAUI	TGTACA	1 cut(s)	477
BstC8I	GCNNGC	3 cut(s)	75, 713, 752
BstDEI	CTNAG	4 cut(s)	210, 564, 798, 1037
BstF5I	GGATG	6 cut(s)	199, 203, 262, 715, 863, 875
BstFNI	CGCG	1 cut(s)	775
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	6 cut(s)	308, 358, 377, 796, 921, 998
BstMAI	GTCTC	2 cut(s)	608, 1116
BstMBI	GATC	6 cut(s)	305, 355, 374, 793, 918, 995
BstMWI	GCNNNNNNNGC	5 cut(s)	425, 827, 833, 848, 974
BstNI	CCWGG	2 cut(s)	470, 946
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	468, 944
BstUI	CGCG	1 cut(s)	775
BstV1I	GCAGC	2 cut(s)	415, 814
BstX2I	RGATCY	1 cut(s)	793
BstXI	CCANNNNNNTGG	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	793
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	810, 1072
BtsCI	GGATG	6 cut(s)	199, 203, 262, 715, 863, 875
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	3 cut(s)	243, 600, 782
BveI	ACCTGC	1 cut(s)	1173
Cac8I	GCNNGC	3 cut(s)	75, 713, 752
CfoI	GCGC	1 cut(s)	527
Cfr10I	RCCGGY	2 cut(s)	711, 750
Cfr13I	GGNCC	2 cut(s)	10, 461
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	6 cut(s)	102, 293, 344, 452, 892, 931
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	4 cut(s)	210, 564, 798, 1037
DpnI	GATC	6 cut(s)	307, 357, 376, 795, 920, 997
DpnII	GATC	6 cut(s)	305, 355, 374, 793, 918, 995
DraI	TTTAAA	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	1070
Eam1104I	CTCTTC	2 cut(s)	720, 1119
EarI	CTCTTC	2 cut(s)	720, 1119
Eco130I	CCWWGG	3 cut(s)	720, 1031, 1202
Eco47I	GGWCC	2 cut(s)	10, 461
Eco81I	CCTNAGG	1 cut(s)	564
Eco88I	CYCGRG	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	468, 944
EcoT14I	CCWWGG	3 cut(s)	720, 1031, 1202
EcoT22I	ATGCAT	1 cut(s)	103
ErhI	CCWWGG	3 cut(s)	720, 1031, 1202
Esp3I	CGTCTC	1 cut(s)	608
FaeI	CATG	6 cut(s)	105, 296, 347, 455, 895, 934
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FatI	CATG	6 cut(s)	101, 292, 343, 451, 891, 930
FauI	CCCGC	1 cut(s)	970
FauNDI	CATATG	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	429, 776, 811, 828
FokI	GGATG	6 cut(s)	186, 190, 249, 702, 862, 870
Fsp4HI	GCNGC	4 cut(s)	429, 776, 811, 828
FspBI	CTAG	6 cut(s)	353, 677, 761, 1032, 1157, 1209
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	4 cut(s)	429, 776, 811, 828
GsaI	CCCAGC	1 cut(s)	821
GsuI	CTGGAG	2 cut(s)	676, 848
HaeIII	GGCC	2 cut(s)	810, 1072
HapII	CCGG	3 cut(s)	712, 751, 1177
HgaI	GACGC	1 cut(s)	625
HhaI	GCGC	1 cut(s)	527
Hin1II	CATG	6 cut(s)	105, 296, 347, 455, 895, 934
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	2 cut(s)	151, 700
HpaII	CCGG	3 cut(s)	712, 751, 1177
HphI	GGTGA	3 cut(s)	1012, 1044, 1074
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	6 cut(s)	93, 108, 310, 379, 507, 880
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	4 cut(s)	103, 206, 452, 1059
HpyCH4III	ACNGT	4 cut(s)	187, 247, 901, 1198
HpyCH4V	TGCA	9 cut(s)	101, 251, 259, 296, 431, 451, 593, 851, 958
HpyF10VI	GCNNNNNNNGC	5 cut(s)	425, 827, 833, 848, 974
HpyF3I	CTNAG	4 cut(s)	210, 564, 798, 1037
Hsp92II	CATG	6 cut(s)	105, 296, 347, 455, 895, 934
HspAI	GCGC	1 cut(s)	525
KroI	GCCGGC	2 cut(s)	711, 750
KroNI	GCCGGC	2 cut(s)	713, 752
Kzo9I	GATC	6 cut(s)	305, 355, 374, 793, 918, 995
LmnI	GCTCC	2 cut(s)	747, 1153
Lsp1109I	GCAGC	2 cut(s)	415, 814
LweI	GCATC	5 cut(s)	88, 260, 724, 848, 919
MaeI	CTAG	6 cut(s)	353, 677, 761, 1032, 1157, 1209
MaeIII	GTNAC	4 cut(s)	187, 780, 1018, 1141
MalI	GATC	6 cut(s)	307, 357, 376, 795, 920, 997
MbiI	CCGCTC	1 cut(s)	836
MboI	GATC	6 cut(s)	305, 355, 374, 793, 918, 995
MboII	GAAGA	9 cut(s)	70, 80, 110, 160, 467, 665, 709, 737, 1106
MflI	RGATCY	1 cut(s)	793
MluCI	AATT	6 cut(s)	173, 278, 414, 583, 733, 1014
MmeI	TCCRAC	1 cut(s)	532
Mph1103I	ATGCAT	1 cut(s)	103
MroNI	GCCGGC	2 cut(s)	711, 750
MseI	TTAA	3 cut(s)	218, 741, 1008
MslI	CAYNNNNRTG	2 cut(s)	856, 1025
MspA1I	CMGCKG	1 cut(s)	802
MspI	CCGG	3 cut(s)	712, 751, 1177
MspR9I	CCNGG	2 cut(s)	470, 946
Mva1269I	GAATGC	1 cut(s)	636
MvaI	CCWGG	2 cut(s)	470, 946
MvnI	CGCG	1 cut(s)	775
MwoI	GCNNNNNNNGC	5 cut(s)	425, 827, 833, 848, 974
NaeI	GCCGGC	2 cut(s)	713, 752
NdeI	CATATG	1 cut(s)	54
NdeII	GATC	6 cut(s)	305, 355, 374, 793, 918, 995
NgoMIV	GCCGGC	2 cut(s)	711, 750
NlaIII	CATG	6 cut(s)	105, 296, 347, 455, 895, 934
NlaIV	GGNNCC	3 cut(s)	749, 795, 1200
NmeAIII	GCCGAG	1 cut(s)	1048
NmuCI	GTSAC	3 cut(s)	780, 1018, 1141
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	1 cut(s)	105
OliI	CACNNNNGTG	1 cut(s)	1025
PaqCI	CACCTGC	1 cut(s)	1173
PctI	GAATGC	1 cut(s)	636
PdiI	GCCGGC	2 cut(s)	713, 752
PfeI	GAWTC	2 cut(s)	151, 700
PflMI	CCANNNNNTGG	1 cut(s)	1168
PkrI	GCNGC	4 cut(s)	430, 777, 812, 829
PpuMI	RGGWCCY	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	2 cut(s)	468, 944
PspFI	CCCAGC	1 cut(s)	817
PspGI	CCWGG	2 cut(s)	468, 944
PspN4I	GGNNCC	3 cut(s)	749, 795, 1200
PspPI	GGNCC	2 cut(s)	10, 461
PspPPI	RGGWCCY	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	793
PvuII	CAGCTG	1 cut(s)	802
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	2 cut(s)	856, 1025
SaqAI	TTAA	3 cut(s)	218, 741, 1008
SatI	GCNGC	4 cut(s)	429, 776, 811, 828
Sau3AI	GATC	6 cut(s)	305, 355, 374, 793, 918, 995
Sau96I	GGNCC	2 cut(s)	10, 461
ScrFI	CCNGG	2 cut(s)	470, 946
SfaNI	GCATC	5 cut(s)	88, 260, 724, 848, 919
SinI	GGWCC	2 cut(s)	10, 461
SmiMI	CAYNNNNRTG	2 cut(s)	856, 1025
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
Sse9I	AATT	6 cut(s)	173, 278, 414, 583, 733, 1014
SsiI	CCGC	4 cut(s)	775, 811, 836, 977
SspMI	CTAG	6 cut(s)	353, 677, 761, 1032, 1157, 1209
StyD4I	CCNGG	2 cut(s)	468, 944
StyI	CCWWGG	3 cut(s)	720, 1031, 1202
TaaI	ACNGT	4 cut(s)	187, 247, 901, 1198
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	6 cut(s)	173, 278, 414, 583, 733, 1014
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	2 cut(s)	778, 813
TfiI	GAWTC	2 cut(s)	151, 700
Tru1I	TTAA	3 cut(s)	218, 741, 1008
Tru9I	TTAA	3 cut(s)	218, 741, 1008
TscAI	CASTG	3 cut(s)	250, 600, 789
TseFI	GTSAC	3 cut(s)	780, 1018, 1141
TseI	GCWGC	2 cut(s)	428, 827
Tsp45I	GTSAC	3 cut(s)	780, 1018, 1141
TspDTI	ATGAA	8 cut(s)	41, 71, 143, 188, 332, 468, 746, 960
TspGWI	ACGGA	5 cut(s)	57, 111, 709, 1026, 1047
TspRI	CASTG	3 cut(s)	250, 600, 789
Van91I	CCANNNNNTGG	1 cut(s)	1168
VpaK11BI	GGWCC	2 cut(s)	10, 461
XapI	RAATTY	2 cut(s)	173, 733
XbaI	TCTAGA	2 cut(s)	352, 676
XceI	RCATGY	1 cut(s)	105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1144
XmaJI	CCTAGG	1 cut(s)	1031
XspI	CTAG	6 cut(s)	353, 677, 761, 1032, 1157, 1209
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.