Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003563

Physical Location & Seq

Genomic Coordinates Forward (+)

3366011 .. 3370760

Gene Structure 4750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0043300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2496 bp

ATGGAGAAGATGACATTGGATTCGAAGGAGTATGAGTTGAAGAAGAACAATATGAGAAAGATGCACGAGAGCTTGCACTCCCAAGCATCTTCCATGCTAGTCTTCACCCTTCAGTGGAAGGAACTGGAGGGACGCTTAGATTCGATCCGGGATGCGACCCAGACCCAACTTGAAGAGCTCCATGAACGAGAGAAGCAGTTGGATGCCAAAGAGTTAAAGATGGAGTCCAAAGCAAATGAGTTCCTGGAACGAGAGAAGCAGTTGGAGGCCAAAGAGTTAAAGATCCAGTCCGAAGTCAATGAGGCGTTTGGACTCGAAAAGCTGATTAAGGAGAAACAAAAAGAGGCTATAGACAGCAAGCACTACTTAAATTCGCTCCAGTTATTGATAAAAGAGCATAGCGAATCAGAGAAAGAGCTTGGAGCCAAGGAAAGACGAATAGAGAGACGAATCCAAGAATTGAATGGGGTTGAGAGGAATATAGAAGAGAAGTTGAAGAAATCTCGTGAGGAACTGAATCAGATTCAGAGGGCGGTTAAGGAGCAGGGTGTAGAATTTGATTTGAAAGAAAAGCAAATTAAAGTGAAAGAGGAGAAATTGAATCGGATTGGGAAGAGTATCGAAGAGAAGTTGAAATTGGCAATTGAGGAGAAGAAGAAAGCATTTGATCTGAAACAAGAGCGTGTCAAAGAAGAGCAGAAACTGAGAGAGGAGAGACTGAAAGAGGAGAAGTTGAAAGAGCATAAGAAATCAGTAGTGGAAGCCTCTAAGGAGCTTAAGTCAAGAGTGGAACTAAAGAGGGAACTAGAACTGAAAGTGAAAGATCATTGCTTGCGAAAGAAATCAATGGAGGAGCGGTCCTGTAATCTCGAACGTAAAGAGAGAGAATTAGAATTGAAAGAGAAGCAAGTTTTGTCAAAAGCTGAGGAACTTGATTCACTTAATAAAAGGACCCTCAATGAGTTTCAGTTGATGGAAAAGGAACTTAGTTCAGTTGAAAGTACGTTACAAGAACGTGAAAAGCAATTGGAAGTGGACTCCCAGCGACTTCAAGTGGAACAGACGCAACTTGAAGTGAAAAGTGAAACAATGGAAAAGTTGCAGCAAGAATGCAAAAAGCAACTTGAAACAAAAGAGAGACAACTGGAAGTAAAAGGTGATACAATGGAAAAAGTGCATCAAGAACGCAAAAAGCAACTCGAAGCGAAAGAGAGACAACTTGAAGAGCAGACCAAAGAGCTTGAATTGACAAAGAAACAATTTGGTTGTCAAATGAAAGTAAAAAGTGAGCCATTGGAAAATACCCCAGCTGCTAACAATGCCATTGTTGCTTCATCTGCAAGTGATCATTCCAAAATCAATATCAGGGATGGTAGAGGCTTGCAACTATTCATGTATGAGCATATGAAGAGAAATGATTCAGTGAGCAAAGAAATCTCAGCTGTTCTTCAACAAGAGTCATTAGAGCCAGCAAAATTGGTTTTGGATGCAATGGAAGGGTTTCAGCCTTCAAATTCGACTGTGGACAATAGGGAGTTTGATTTGGTAATTATTAGAAGGACATATATTCTTTTGTTGGAAGAGTTAAAGAGAGTCTCGGCGCAAATTAATCCTCAGGTGAGAGGACAAGCACTGAAGTTGGCCAGTGATTGGAAGGCTAAGATGACGGTGGGGACTGAGAATTGGTTAGAGGTTTTGGGATTTTTGCGGCTTGTTACTACATATGAATTGACCTCTGCCTTTGATGCAAATGAGCTTCAAGGTCTTCTTGATATAGTAGCTCAACATGAACAAGCAACTGAATTATCCCGAGCCCTTGGTACCACAGATAAGGCAGCTCCTGATGTCGAAACTAAGAATGAGAAAAGTTCTGCAGCAGCAATCTTTTCTTCTCCTAATCTTCAACCAGCTACCACTGTCCCAGCTAATGCTATTATTGCTATTCAGAAATTTATTGGAAGGAAGAAACTGATGAAGGCTTATGGACGCATTCACAAATTCAAGTTATTAGACAAGTTCCCTCCAGCTCAAGTCTTAAAAGAATATGTTGAGAAAGCTATGAAGTGCATGGAAAATAGCGAGAGAAAAGAAATGCTCCATCAACAGGATCAGGTTGTATCCGAAGGAATATCTGATCTACGACGTGCTATTCAATGCATCAAACATCACAACCTTGAGTCTGAATACCCTTCTGAGAGCATTGAGAAACAAATGGTTGTGCTGCAGAAATTTATGGAGGATCGGAAGAACCAAAAACAGAAAAAACGCTTGTGCAGCACAATTGATTCCAGCTTTCAACAGCAGGAACATAAATTTCAGCGGACATCCTTATCAGCGGGGAGACCATATGGATTGCACCCTGACAATCCAAATCCAGGTTCTCCATTTTACAATGGACAGTTTAGTATTCCTTCCAACAATTATCCCGTGCAGTTTAGCATGCCTGCCAACGGCGTTAATCATGAGTTCCCTAGAATATGTCCATACCCTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

831

Amino Acids

96.77

Weight (kDa)

8.24

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Frigida	PF07899	457 - 611	5.7e-33	Frigida-like protein
Frigida	PF07899	648 - 751	6.4e-18	Frigida-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10910 AT5G01880
fragaria_vesca	FvH4_6g09940 FvH4_7g25880 FvH4_7g25880
malus_domestica	MD01G1167200.v1.1 MD04G1174300.v1.1 MD07G1233300.v1.1 MD12G1187900.v1.1
prunus_persica	Prupe.2G263800_v2.0.a1 Prupe.6G293100_v2.0.a1
pyrus_communis	pycom01g18030 pycom04g15370
rosa_chinensis	RchiOBHm_Chr1g0372171 RchiOBHm_Chr3g0460531
rosa_laevigata	RLG00000024996 RLG00000026917
rosa_multiflora	Rmu_co8033776.1_g000001 Rmu_sc0001755.1_g000021 Rmu_sc0004267.1_g000002 Rmu_sc0006046.1_g000005
rosa_roxburghii	Rroxscaffold_4G00285170 Rroxscaffold_6G00419400
rosa_rugosa	Rorug01G0370100 Rorug03G0043300
rosa_samantha	Rh1AG378600 Rh1BG341900 Rh1CG355500 Rh1DG373000 Rh3AG101500 Rh3BG105500 Rh3CG107300 Rh3DG106900
rosa_wichuraiana	Rw1G033310 Rw3G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1820
AccB1I	GGYRCC	1 cut(s)	1820
AccB7I	CCANNNNNTGG	1 cut(s)	1650
AccBSI	CCGCTC	1 cut(s)	856
AciI	CCGC	5 cut(s)	533, 856, 1708, 2320, 2336
AclWI	GGATC	4 cut(s)	139, 277, 2115, 2247
AcoI	YGGCCR	1 cut(s)	1641
AcsI	RAATTY	7 cut(s)	370, 554, 1513, 1949, 1997, 2228, 2312
AcuI	CTGAAG	2 cut(s)	95, 1655
AfaI	GTAC	2 cut(s)	1003, 1822
AfiI	CCNNNNNNNGG	5 cut(s)	114, 1650, 2104, 2375, 2450
AflII	CTTAAG	1 cut(s)	776
AjiI	CACGTC	1 cut(s)	2144
AjnI	CCWGG	2 cut(s)	243, 2374
AjuI	GAANNNNNNNTTGG	5 cut(s)	31, 620, 652, 2362, 2394
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	6 cut(s)	439, 709, 1132, 1207, 1600, 2335
AlwI	GGATC	4 cut(s)	139, 277, 2115, 2247
AlwNI	CAGNNNCTG	2 cut(s)	703, 1841
Ama87I	CYCGRG	1 cut(s)	1809
AoxI	GGCC	2 cut(s)	267, 1641
ApeKI	GCWGC	7 cut(s)	1102, 1310, 1835, 1874, 1877, 2221, 2274
ApoI	RAATTY	7 cut(s)	370, 554, 1513, 1949, 1997, 2228, 2312
ArsI	GACNNNNNNTTYG	1 cut(s)	36
AseI	ATTAAT	1 cut(s)	1608
Asp700I	GAANNNNTTC	2 cut(s)	1417, 1500
Asp718I	GGTACC	1 cut(s)	1820
AspLEI	GCGC	1 cut(s)	1603
AspS9I	GGNCC	2 cut(s)	858, 951
AsuC2I	CCSGG	1 cut(s)	149
AsuHPI	GGTGA	3 cut(s)	97, 1169, 1630
AsuII	TTCGAA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	1809
AvaII	GGWCC	2 cut(s)	858, 951
AxyI	CCTNAGG	1 cut(s)	1614
BalI	TGGCCA	1 cut(s)	1643
BanI	GGYRCC	1 cut(s)	1820
BanII	GRGCYC	2 cut(s)	180, 1816
BauI	CACGAG	2 cut(s)	65, 504
BbsI	GAAGAC	2 cut(s)	94, 1757
Bbv12I	GWGCWC	1 cut(s)	180
BbvCI	CCTCAGC	1 cut(s)	924
BbvI	GCAGC	7 cut(s)	1114, 1297, 1847, 1886, 1889, 2208, 2286
BccI	CCATC	4 cut(s)	214, 967, 1364, 2106
BceAI	ACGGC	1 cut(s)	2467
BciT130I	CCWGG	2 cut(s)	245, 2376
BciVI	GTATCC	1 cut(s)	2128
BclI	TGATCA	1 cut(s)	1345
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	6 cut(s)	439, 709, 1132, 1207, 1600, 2335
BfaI	CTAG	3 cut(s)	98, 806, 2472
BfmI	CTRYAG	3 cut(s)	348, 1872, 2222
BfrI	CTTAAG	1 cut(s)	776
BfuI	GTATCC	1 cut(s)	2128
BisI	GCNGC	8 cut(s)	1103, 1311, 1709, 1836, 1875, 1878, 2222, 2275
BlsI	GCNGC	8 cut(s)	1104, 1312, 1710, 1837, 1876, 1879, 2223, 2276
Bme1390I	CCNGG	3 cut(s)	149, 245, 2376
Bme18I	GGWCC	2 cut(s)	858, 951
BmeT110I	CYCGRG	1 cut(s)	1809
BmgBI	CACGTC	1 cut(s)	2144
BmgT120I	GGNCC	2 cut(s)	858, 951
BmiI	GGNNCC	3 cut(s)	424, 953, 1822
BmrFI	CCNGG	3 cut(s)	149, 245, 2376
BmsI	GCATC	8 cut(s)	51, 95, 142, 193, 1186, 1477, 1735, 2166
BpiI	GAAGAC	2 cut(s)	94, 1757
BpmI	CTGGAG	3 cut(s)	146, 362, 2007
Bpu10I	CCTNAGC	1 cut(s)	924
Bpu14I	TTCGAA	1 cut(s)	23
BpuEI	CTTGAG	2 cut(s)	2013, 2195
BpuMI	CCSGG	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	2335
BsaJI	CCNNGG	2 cut(s)	426, 1816
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 764, 794, 842, 872
Bsc4I	CCNNNNNNNGG	5 cut(s)	114, 1650, 2104, 2375, 2450
Bse1I	ACTGG	5 cut(s)	129, 286, 379, 1149, 1644
Bse21I	CCTNAGG	1 cut(s)	1614
Bse3DI	GCAATG	2 cut(s)	826, 1497
BseBI	CCWGG	2 cut(s)	245, 2376
BseDI	CCNNGG	2 cut(s)	426, 1816
BseGI	GGATG	5 cut(s)	157, 208, 1375, 1492, 2324
BseLI	CCNNNNNNNGG	5 cut(s)	114, 1650, 2104, 2375, 2450
BseMI	GCAATG	2 cut(s)	826, 1497
BseMII	CTCAG	6 cut(s)	695, 915, 1452, 1628, 1668, 2184
BseNI	ACTGG	5 cut(s)	129, 286, 379, 1149, 1644
BseRI	GAGGAG	5 cut(s)	605, 662, 725, 740, 866
BseXI	GCAGC	7 cut(s)	1114, 1297, 1847, 1886, 1889, 2208, 2286
BseYI	CCCAGC	3 cut(s)	1041, 1306, 1921
BsgI	GTGCAG	2 cut(s)	2293, 2450
BshFI	GGCC	2 cut(s)	269, 1643
BshNI	GGYRCC	1 cut(s)	1820
BsiHKAI	GWGCWC	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	1809
BsiSI	CCGG	1 cut(s)	148
BslFI	GGGAC	3 cut(s)	144, 1687, 1904
BslI	CCNNNNNNNGG	5 cut(s)	114, 1650, 2104, 2375, 2450
BsmAI	GTCTC	6 cut(s)	439, 709, 1132, 1207, 1600, 2335
BsmBI	CGTCTC	1 cut(s)	439
BsmFI	GGGAC	3 cut(s)	144, 1687, 1904
BsmI	GAATGC	2 cut(s)	1115, 1989
BsnI	GGCC	2 cut(s)	269, 1643
Bso31I	GGTCTC	1 cut(s)	2335
BsoBI	CYCGRG	1 cut(s)	1809
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	180, 1816
Bsp143I	GATC	8 cut(s)	144, 282, 667, 823, 1345, 2107, 2134, 2239
BspACI	CCGC	5 cut(s)	533, 856, 1708, 2320, 2336
BspANI	GGCC	2 cut(s)	269, 1643
BspCNI	CTCAG	6 cut(s)	696, 916, 1451, 1627, 1669, 2185
BspHI	TCATGA	1 cut(s)	2461
BspLI	GGNNCC	3 cut(s)	424, 953, 1822
BspMAI	CTGCAG	2 cut(s)	1876, 2226
BspPI	GGATC	4 cut(s)	139, 277, 2115, 2247
BspQI	GCTCTTC	3 cut(s)	168, 687, 1218
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	1820
BspTI	CTTAAG	1 cut(s)	776
BspTNI	GGTCTC	1 cut(s)	2335
BsrBI	CCGCTC	1 cut(s)	856
BsrDI	GCAATG	2 cut(s)	826, 1497
BsrI	ACTGG	5 cut(s)	129, 286, 379, 1149, 1644
BssECI	CCNNGG	2 cut(s)	426, 1816
BssMI	GATC	8 cut(s)	144, 282, 667, 823, 1345, 2107, 2134, 2239
BssSI	CACGAG	2 cut(s)	65, 504
BssT1I	CCWWGG	2 cut(s)	426, 1816
Bst2BI	CACGAG	2 cut(s)	65, 504
Bst2UI	CCWGG	2 cut(s)	245, 2376
Bst4CI	ACNGT	4 cut(s)	1522, 1669, 1918, 2400
Bst6I	CTCTTC	8 cut(s)	168, 480, 608, 618, 687, 1218, 1403, 1575
BstAFI	CTTAAG	1 cut(s)	776
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	7 cut(s)	74, 359, 833, 1382, 1470, 2441, 2445
BstF5I	GGATG	5 cut(s)	157, 208, 1375, 1492, 2324
BstHHI	GCGC	1 cut(s)	1603
BstKTI	GATC	8 cut(s)	147, 285, 670, 826, 1348, 2110, 2137, 2242
BstMAI	GTCTC	6 cut(s)	439, 709, 1132, 1207, 1600, 2335
BstMBI	GATC	8 cut(s)	144, 282, 667, 823, 1345, 2107, 2134, 2239
BstMWI	GCNNNNNNNGC	6 cut(s)	1319, 1328, 1337, 1745, 1937, 2274
BstNI	CCWGG	2 cut(s)	245, 2376
BstNSI	RCATGY	1 cut(s)	2443
BstSCI	CCNGG	3 cut(s)	147, 243, 2374
BstSFI	CTRYAG	3 cut(s)	348, 1872, 2222
BstV1I	GCAGC	7 cut(s)	1114, 1297, 1847, 1886, 1889, 2208, 2286
BstV2I	GAAGAC	2 cut(s)	94, 1757
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	1614
BsuI	GTATCC	1 cut(s)	2128
BsuRI	GGCC	2 cut(s)	269, 1643
BtrI	CACGTC	1 cut(s)	2144
BtsCI	GGATG	5 cut(s)	157, 208, 1375, 1492, 2324
BtsIMutI	CAGTG	5 cut(s)	119, 1428, 1631, 1651, 1914
Cac8I	GCNNGC	7 cut(s)	74, 359, 833, 1382, 1470, 2441, 2445
CaiI	CAGNNNCTG	2 cut(s)	703, 1841
CciI	TCATGA	1 cut(s)	2461
CfoI	GCGC	1 cut(s)	1603
Cfr13I	GGNCC	2 cut(s)	858, 951
CseI	GACGC	3 cut(s)	141, 1072, 1995
Csp6I	GTAC	2 cut(s)	1002, 1821
CviAII	CATG	7 cut(s)	94, 182, 1393, 1787, 2068, 2440, 2462
CviQI	GTAC	2 cut(s)	1002, 1821
DpnI	GATC	8 cut(s)	146, 284, 669, 825, 1347, 2109, 2136, 2241
DpnII	GATC	8 cut(s)	144, 282, 667, 823, 1345, 2107, 2134, 2239
EaeI	YGGCCR	1 cut(s)	1641
Eam1104I	CTCTTC	8 cut(s)	168, 480, 608, 618, 687, 1218, 1403, 1575
EarI	CTCTTC	8 cut(s)	168, 480, 608, 618, 687, 1218, 1403, 1575
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	426, 1816
Eco24I	GRGCYC	2 cut(s)	180, 1816
Eco31I	GGTCTC	1 cut(s)	2335
Eco47I	GGWCC	2 cut(s)	858, 951
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	95, 1655
Eco81I	CCTNAGG	1 cut(s)	1614
Eco88I	CYCGRG	1 cut(s)	1809
EcoICRI	GAGCTC	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	951
EcoRII	CCWGG	2 cut(s)	243, 2374
EcoT14I	CCWWGG	2 cut(s)	426, 1816
EcoT22I	ATGCAT	1 cut(s)	2159
EcoT38I	GRGCYC	2 cut(s)	180, 1816
ErhI	CCWWGG	2 cut(s)	426, 1816
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	7 cut(s)	97, 185, 1396, 1790, 2071, 2443, 2465
FalI	AAGNNNNNCTT	4 cut(s)	350, 382, 1752, 1784
FaqI	GGGAC	3 cut(s)	144, 1687, 1904
FatI	CATG	7 cut(s)	93, 181, 1392, 1786, 2067, 2439, 2461
FauI	CCCGC	1 cut(s)	2329
FauNDI	CATATG	3 cut(s)	1404, 1723, 2347
FbaI	TGATCA	1 cut(s)	1345
Fnu4HI	GCNGC	8 cut(s)	1103, 1311, 1709, 1836, 1875, 1878, 2222, 2275
FokI	GGATG	5 cut(s)	164, 215, 1382, 1499, 2311
FriOI	GRGCYC	2 cut(s)	180, 1816
Fsp4HI	GCNGC	8 cut(s)	1103, 1311, 1709, 1836, 1875, 1878, 2222, 2275
FspBI	CTAG	3 cut(s)	98, 806, 2472
GlaI	GCGC	1 cut(s)	1602
GluI	GCNGC	8 cut(s)	1103, 1311, 1709, 1836, 1875, 1878, 2222, 2275
GsaI	CCCAGC	3 cut(s)	1045, 1310, 1925
GsuI	CTGGAG	3 cut(s)	146, 362, 2007
HaeIII	GGCC	2 cut(s)	269, 1643
HapII	CCGG	1 cut(s)	148
HgaI	GACGC	3 cut(s)	141, 1072, 1995
HhaI	GCGC	1 cut(s)	1603
Hin1II	CATG	7 cut(s)	97, 185, 1396, 1790, 2071, 2443, 2465
Hin6I	GCGC	1 cut(s)	1601
HinP1I	GCGC	1 cut(s)	1601
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	3 cut(s)	97, 1169, 1630
Hpy166II	GTNNAC	2 cut(s)	1036, 1525
Hpy188III	TCNNGA	8 cut(s)	506, 783, 869, 1181, 1769, 1809, 1841, 2462
Hpy8I	GTNNAC	2 cut(s)	1036, 1525
Hpy99I	CGWCG	1 cut(s)	2145
HpyCH4III	ACNGT	4 cut(s)	1522, 1669, 1918, 2400
HpyCH4IV	ACGT	4 cut(s)	874, 1004, 1015, 2143
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1319, 1328, 1337, 1745, 1937, 2274
HpySE526I	ACGT	4 cut(s)	874, 1004, 1015, 2143
Hsp92II	CATG	7 cut(s)	97, 185, 1396, 1790, 2071, 2443, 2465
HspAI	GCGC	1 cut(s)	1601
KpnI	GGTACC	1 cut(s)	1824
Ksp22I	TGATCA	1 cut(s)	1345
Kzo9I	GATC	8 cut(s)	144, 282, 667, 823, 1345, 2107, 2134, 2239
LguI	GCTCTTC	3 cut(s)	168, 687, 1218
LmnI	GCTCC	8 cut(s)	183, 381, 422, 541, 772, 853, 1843, 2100
Lsp1109I	GCAGC	7 cut(s)	1114, 1297, 1847, 1886, 1889, 2208, 2286
LweI	GCATC	8 cut(s)	51, 95, 142, 193, 1186, 1477, 1735, 2166
MaeI	CTAG	3 cut(s)	98, 806, 2472
MaeII	ACGT	4 cut(s)	874, 1004, 1015, 2143
MaeIII	GTNAC	2 cut(s)	1005, 1714
MalI	GATC	8 cut(s)	146, 284, 669, 825, 1347, 2109, 2136, 2241
MbiI	CCGCTC	1 cut(s)	856
MboI	GATC	8 cut(s)	144, 282, 667, 823, 1345, 2107, 2134, 2239
MfeI	CAATTG	3 cut(s)	642, 1025, 2280
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	180, 1816
MlsI	TGGCCA	1 cut(s)	1643
MluNI	TGGCCA	1 cut(s)	1643
MlyI	GAGTC	6 cut(s)	233, 306, 1031, 1466, 1602, 2186
MmeI	TCCRAC	4 cut(s)	180, 243, 1557, 2439
Mox20I	TGGCCA	1 cut(s)	1643
Mph1103I	ATGCAT	1 cut(s)	2159
MroXI	GAANNNNTTC	2 cut(s)	1417, 1500
MscI	TGGCCA	1 cut(s)	1643
Msp20I	TGGCCA	1 cut(s)	1643
MspA1I	CMGCKG	4 cut(s)	1310, 1442, 2320, 2336
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	1 cut(s)	148
MspR9I	CCNGG	3 cut(s)	149, 245, 2376
MunI	CAATTG	3 cut(s)	642, 1025, 2280
Mva1269I	GAATGC	2 cut(s)	1115, 1989
MvaI	CCWGG	2 cut(s)	245, 2376
MwoI	GCNNNNNNNGC	6 cut(s)	1319, 1328, 1337, 1745, 1937, 2274
NciI	CCSGG	1 cut(s)	149
NdeI	CATATG	3 cut(s)	1404, 1723, 2347
NdeII	GATC	8 cut(s)	144, 282, 667, 823, 1345, 2107, 2134, 2239
NlaIII	CATG	7 cut(s)	97, 185, 1396, 1790, 2071, 2443, 2465
NlaIV	GGNNCC	3 cut(s)	424, 953, 1822
NmeAIII	GCCGAG	1 cut(s)	1577
NsiI	ATGCAT	1 cut(s)	2159
NspI	RCATGY	1 cut(s)	2443
NspV	TTCGAA	1 cut(s)	23
PaeI	GCATGC	1 cut(s)	2443
PagI	TCATGA	1 cut(s)	2461
PciSI	GCTCTTC	3 cut(s)	168, 687, 1218
PctI	GAATGC	2 cut(s)	1115, 1989
PdmI	GAANNNNTTC	2 cut(s)	1417, 1500
PflMI	CCANNNNNTGG	1 cut(s)	1650
PfoI	TCCNGGA	2 cut(s)	147, 243
PkrI	GCNGC	8 cut(s)	1104, 1312, 1710, 1837, 1876, 1879, 2223, 2276
PleI	GAGTC	6 cut(s)	232, 306, 1031, 1465, 1601, 2185
PpsI	GAGTC	6 cut(s)	232, 306, 1031, 1465, 1601, 2185
PpuMI	RGGWCCY	1 cut(s)	951
PshBI	ATTAAT	1 cut(s)	1608
Psp124BI	GAGCTC	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	951
Psp6I	CCWGG	2 cut(s)	243, 2374
PspFI	CCCAGC	3 cut(s)	1041, 1306, 1921
PspGI	CCWGG	2 cut(s)	243, 2374
PspN4I	GGNNCC	3 cut(s)	424, 953, 1822
PspPI	GGNCC	2 cut(s)	858, 951
PspPPI	RGGWCCY	1 cut(s)	951
PstI	CTGCAG	2 cut(s)	1876, 2226
PstNI	CAGNNNCTG	2 cut(s)	703, 1841
PsuI	RGATCY	1 cut(s)	282
PvuII	CAGCTG	2 cut(s)	1310, 1442
RsaI	GTAC	2 cut(s)	1003, 1822
RsaNI	GTAC	2 cut(s)	1002, 1821
SacI	GAGCTC	1 cut(s)	180
SapI	GCTCTTC	3 cut(s)	168, 687, 1218
SatI	GCNGC	8 cut(s)	1103, 1311, 1709, 1836, 1875, 1878, 2222, 2275
Sau3AI	GATC	8 cut(s)	144, 282, 667, 823, 1345, 2107, 2134, 2239
Sau96I	GGNCC	2 cut(s)	858, 951
SchI	GAGTC	6 cut(s)	233, 306, 1031, 1466, 1602, 2186
ScrFI	CCNGG	3 cut(s)	149, 245, 2376
SduI	GDGCHC	2 cut(s)	180, 1816
SfaNI	GCATC	8 cut(s)	51, 95, 142, 193, 1186, 1477, 1735, 2166
SfcI	CTRYAG	3 cut(s)	348, 1872, 2222
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	2 cut(s)	858, 951
SmlI	CTYRAG	3 cut(s)	776, 2028, 2174
SmoI	CTYRAG	3 cut(s)	776, 2028, 2174
SphI	GCATGC	1 cut(s)	2443
SsiI	CCGC	5 cut(s)	533, 856, 1708, 2320, 2336
SspMI	CTAG	3 cut(s)	98, 806, 2472
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	3 cut(s)	147, 243, 2374
StyI	CCWWGG	2 cut(s)	426, 1816
TaaI	ACNGT	4 cut(s)	1522, 1669, 1918, 2400
TaiI	ACGT	4 cut(s)	877, 1007, 1018, 2146
TaqI	TCGA	8 cut(s)	23, 143, 315, 621, 870, 1200, 1517, 1848
TauI	GCSGC	1 cut(s)	1711
TscAI	CASTG	5 cut(s)	119, 1428, 1638, 1651, 1921
TseI	GCWGC	7 cut(s)	1102, 1310, 1835, 1874, 1877, 2221, 2274
TspDTI	ATGAA	9 cut(s)	198, 1289, 1323, 1381, 1421, 1740, 1803, 1988, 2075
TspRI	CASTG	5 cut(s)	119, 1428, 1638, 1651, 1921
Van91I	CCANNNNNTGG	1 cut(s)	1650
Vha464I	CTTAAG	1 cut(s)	776
VpaK11BI	GGWCC	2 cut(s)	858, 951
VspI	ATTAAT	1 cut(s)	1608
XapI	RAATTY	7 cut(s)	370, 554, 1513, 1949, 1997, 2228, 2312
XceI	RCATGY	1 cut(s)	2443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	461
XmnI	GAANNNNTTC	2 cut(s)	1417, 1500
XspI	CTAG	3 cut(s)	98, 806, 2472
Zsp2I	ATGCAT	1 cut(s)	2159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.