Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8033776.1

Orthogroup ID

OG0003563

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 548

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8033776.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 503 bp

aacatggtcatcatcttggcggctctcttgtgtgcccttatatgcgctcttggcttgaactcaatagtgcgttgcgcgcttcgctgcagccacaggtttactcttgagaccccggagcaggctgcagcgcgtctcgcggccactgggctcaagaagagtcatttgaggcagattccggttgcggtttacggtgaagggattcatattccggcgaccgagtgtccgatctgtctcggagagtttgaggacggcgagaaggttagggtgctgccaaaatgtaaccacggattccatgtgaggtgcatagacacttggcttgtgtcacactcatcatgcccgaattgtcggcattcactgctcgagcaacaacaaccatcgaagaaaactagaactactagtcgtagtactaccagtactagttctgaagcgacagagaattcatcaccaacagccagtgagtccgaccaggaaggcagagtagttctggtgattgatgaagcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

167

Amino Acids

18.14

Weight (kDa)

7.16

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10910 AT5G01880
fragaria_vesca	FvH4_6g09940 FvH4_7g25880 FvH4_7g25880
malus_domestica	MD01G1167200.v1.1 MD04G1174300.v1.1 MD07G1233300.v1.1 MD12G1187900.v1.1
prunus_persica	Prupe.2G263800_v2.0.a1 Prupe.6G293100_v2.0.a1
pyrus_communis	pycom01g18030 pycom04g15370
rosa_chinensis	RchiOBHm_Chr1g0372171 RchiOBHm_Chr3g0460531
rosa_laevigata	RLG00000024996 RLG00000026917
rosa_multiflora	Rmu_co8033776.1_g000001 Rmu_sc0001755.1_g000021 Rmu_sc0004267.1_g000002 Rmu_sc0006046.1_g000005
rosa_roxburghii	Rroxscaffold_4G00285170 Rroxscaffold_6G00419400
rosa_rugosa	Rorug01G0370100 Rorug03G0043300
rosa_samantha	Rh1AG378600 Rh1BG341900 Rh1CG355500 Rh1DG373000 Rh3AG101500 Rh3BG105500 Rh3CG107300 Rh3DG106900
rosa_wichuraiana	Rw1G033310 Rw3G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	77, 130, 137
AciI	CCGC	3 cut(s)	20, 137, 182
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	2 cut(s)	406, 415
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	58
AhdI	GACNNNNNGTC	1 cut(s)	219
AhlI	ACTAGT	2 cut(s)	395, 416
AjnI	CCWGG	1 cut(s)	465
Alw26I	GTCTC	3 cut(s)	101, 137, 236
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	138
ApeKI	GCWGC	5 cut(s)	84, 87, 122, 125, 268
ApoI	RAATTY	1 cut(s)	436
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	4 cut(s)	47, 77, 79, 130
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	3 cut(s)	203, 435, 499
AvaI	CYCGRG	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	150
BbvI	GCAGC	5 cut(s)	71, 99, 109, 137, 255
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	467
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	3 cut(s)	101, 137, 236
BcuI	ACTAGT	2 cut(s)	395, 416
BfaI	CTAG	3 cut(s)	387, 396, 417
BfmI	CTRYAG	2 cut(s)	85, 123
BisI	GCNGC	7 cut(s)	21, 85, 88, 123, 126, 138, 269
BlsI	GCNGC	7 cut(s)	22, 86, 89, 124, 127, 139, 270
BmcAI	AGTACT	2 cut(s)	406, 415
Bme1390I	CCNGG	2 cut(s)	113, 467
BmeRI	GACNNNNNGTC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	359
BmrFI	CCNGG	2 cut(s)	113, 467
BmrI	ACTGGG	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	125, 134
BpuMI	CCSGG	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	111, 283
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	3 cut(s)	148, 411, 453
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	111, 283
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseNI	ACTGG	3 cut(s)	148, 411, 453
BsePI	GCGCGC	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	37
BseXI	GCAGC	5 cut(s)	71, 99, 109, 137, 255
Bsh1236I	CGCG	3 cut(s)	77, 130, 137
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	140
BsiEI	CGRYCG	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	3 cut(s)	113, 176, 209
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	3 cut(s)	101, 137, 236
BsmBI	CGTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	37, 150
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	3 cut(s)	20, 137, 182
BspANI	GGCC	1 cut(s)	140
BspFNI	CGCG	3 cut(s)	77, 130, 137
BspMAI	CTGCAG	2 cut(s)	89, 127
BspTNI	GGTCTC	1 cut(s)	101
BsrI	ACTGG	3 cut(s)	148, 411, 453
BssECI	CCNNGG	2 cut(s)	111, 283
BssHII	GCGCGC	1 cut(s)	75
BssMI	GATC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	77, 120
BstDSI	CCRYGG	1 cut(s)	283
BstFNI	CGCG	3 cut(s)	77, 130, 137
BstHHI	GCGC	4 cut(s)	47, 77, 79, 130
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	3 cut(s)	101, 137, 236
BstMBI	GATC	1 cut(s)	225
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 76, 81, 134, 355
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	111, 465
BstSFI	CTRYAG	2 cut(s)	85, 123
BstSLI	GKGCMC	1 cut(s)	37
BstUI	CGCG	3 cut(s)	77, 130, 137
BstV1I	GCAGC	5 cut(s)	71, 99, 109, 137, 255
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	3 cut(s)	141, 353, 460
Cac8I	GCNNGC	2 cut(s)	77, 120
CfoI	GCGC	4 cut(s)	47, 77, 79, 130
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	405, 414
CviAII	CATG	3 cut(s)	4, 293, 333
CviJI	RGCY	8 cut(s)	23, 54, 90, 122, 140, 148, 316, 452
CviKI_1	RGCY	8 cut(s)	23, 54, 90, 122, 140, 148, 316, 452
CviQI	GTAC	2 cut(s)	405, 414
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
DriI	GACNNNNNGTC	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	149
Eam1105I	GACNNNNNGTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	465
EcoT38I	GRGCYC	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	3 cut(s)	7, 296, 336
FaiI	YATR	7 cut(s)	5, 41, 43, 204, 294, 305, 334
FatI	CATG	3 cut(s)	3, 292, 332
Fnu4HI	GCNGC	7 cut(s)	21, 85, 88, 123, 126, 138, 269
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	7 cut(s)	21, 85, 88, 123, 126, 138, 269
FspBI	CTAG	3 cut(s)	387, 396, 417
GlaI	GCGC	4 cut(s)	46, 76, 78, 129
GluI	GCNGC	7 cut(s)	21, 85, 88, 123, 126, 138, 269
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	3 cut(s)	113, 176, 209
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	4 cut(s)	47, 77, 79, 130
Hin1II	CATG	3 cut(s)	7, 296, 336
Hin6I	GCGC	4 cut(s)	45, 75, 77, 128
HinP1I	GCGC	4 cut(s)	45, 75, 77, 128
HinfI	GANTC	5 cut(s)	157, 172, 199, 288, 458
HpaII	CCGG	3 cut(s)	113, 176, 209
HphI	GGTGA	3 cut(s)	203, 435, 499
Hpy166II	GTNNAC	2 cut(s)	99, 187
Hpy188I	TCNGA	4 cut(s)	225, 236, 424, 463
Hpy188III	TCNNGA	2 cut(s)	104, 151
Hpy8I	GTNNAC	2 cut(s)	99, 187
HpyAV	CCTTC	3 cut(s)	188, 250, 464
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	3 cut(s)	87, 125, 303
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 76, 81, 134, 355
Hsp92II	CATG	3 cut(s)	7, 296, 336
HspAI	GCGC	4 cut(s)	45, 75, 77, 128
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	5 cut(s)	71, 99, 109, 137, 255
MaeI	CTAG	3 cut(s)	387, 396, 417
MaeIII	GTNAC	2 cut(s)	278, 321
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	2 cut(s)	166, 391
MhlI	GDGCHC	2 cut(s)	37, 150
MluCI	AATT	2 cut(s)	340, 436
MlyI	GAGTC	2 cut(s)	166, 467
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	3 cut(s)	159, 238, 291
MroXI	GAANNNNTTC	1 cut(s)	198
MspI	CCGG	3 cut(s)	113, 176, 209
MspR9I	CCNGG	2 cut(s)	113, 467
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	3 cut(s)	77, 130, 137
MwoI	GCNNNNNNNGC	5 cut(s)	51, 76, 81, 134, 355
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	3 cut(s)	7, 296, 336
NmuCI	GTSAC	1 cut(s)	321
PaeR7I	CTCGAG	1 cut(s)	359
PauI	GCGCGC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	349
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	3 cut(s)	172, 199, 288
PkrI	GCNGC	7 cut(s)	22, 86, 89, 124, 127, 139, 270
PleI	GAGTC	2 cut(s)	165, 466
PpsI	GAGTC	2 cut(s)	165, 466
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspXI	VCTCGAGB	1 cut(s)	359
PstI	CTGCAG	2 cut(s)	89, 127
PteI	GCGCGC	1 cut(s)	75
RsaI	GTAC	2 cut(s)	406, 415
RsaNI	GTAC	2 cut(s)	405, 414
SatI	GCNGC	7 cut(s)	21, 85, 88, 123, 126, 138, 269
Sau3AI	GATC	1 cut(s)	225
ScaI	AGTACT	2 cut(s)	406, 415
SchI	GAGTC	2 cut(s)	166, 467
ScrFI	CCNGG	2 cut(s)	113, 467
SduI	GDGCHC	2 cut(s)	37, 150
SetI	ASST	3 cut(s)	98, 261, 302
SfcI	CTRYAG	2 cut(s)	85, 123
Sfr274I	CTCGAG	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	359
SmlI	CTYRAG	3 cut(s)	104, 149, 359
SmoI	CTYRAG	3 cut(s)	104, 149, 359
SpeI	ACTAGT	2 cut(s)	395, 416
Sse9I	AATT	2 cut(s)	340, 436
SsiI	CCGC	3 cut(s)	20, 137, 182
SspMI	CTAG	3 cut(s)	387, 396, 417
StyD4I	CCNGG	2 cut(s)	111, 465
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	360, 377
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	2 cut(s)	340, 436
TatI	WGTACW	2 cut(s)	404, 413
TauI	GCSGC	2 cut(s)	23, 140
TfiI	GAWTC	3 cut(s)	172, 199, 288
TscAI	CASTG	3 cut(s)	148, 360, 460
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	5 cut(s)	84, 87, 122, 125, 268
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	2 cut(s)	191, 429
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	3 cut(s)	148, 360, 460
XapI	RAATTY	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	3 cut(s)	387, 396, 417
ZrmI	AGTACT	2 cut(s)	406, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.