Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003563

Physical Location & Seq

Genomic Coordinates Reverse (-)

3412911 .. 3414019

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGTCGGTTGCTACTTGAGCCGCAAGCAAACGCACCCGCCAACGCAAACCCTAAACCCAAAGGAGGCATAAACGACACCTACTTCGACACTAACATGGTTATCATTTTAGCTGCTTTACTCTGCGCTTTAATCTGTGCTCTAAGCCTCAACTCTGCCTTGCGATGTGTGCTACGCATAACTCGGAGATTCACTTCGGATGATCAAGTCTCAAACGCTTCAAACGCAAACGCAAATTTGGGACGTTTAGCGGCTGCCACGGGTCTCAAGAAACAGGCGTTGAAACAAATCCCCGTGGGACTGTACGGATCAGGAATCATAGACATGAAAGCTACGGAGTGTTTGATCTGTCTGGGAGATTTCGAAGATGGAGAAAAAGTTAGGGTTTTACCTAAATGTAACCATGGCTTCCACGTGAGGTGCATCGATACTTGGTTGCTCTCACGTTCCTCTTGCCCCACTTGTAGACAATCGCTACTCCTTGAGCAGCCTTCGCCGATGGCTGTTTCCCGGCGGGACGAGGACATGGTAGTTTCCATCGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

181

Amino Acids

19.6

Weight (kDa)

8.62

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	113 - 156	5.9e-15	Ring finger domain
zf-RING_11	PF17123	113 - 142	2.5e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	113 - 155	3.4e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	114 - 155	4.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	122 - 156	1.5e-09	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	129 - 161	7.1e-07	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10910 AT5G01880
fragaria_vesca	FvH4_6g09940 FvH4_7g25880 FvH4_7g25880
malus_domestica	MD01G1167200.v1.1 MD04G1174300.v1.1 MD07G1233300.v1.1 MD12G1187900.v1.1
prunus_persica	Prupe.2G263800_v2.0.a1 Prupe.6G293100_v2.0.a1
pyrus_communis	pycom01g18030 pycom04g15370
rosa_chinensis	RchiOBHm_Chr1g0372171 RchiOBHm_Chr3g0460531
rosa_laevigata	RLG00000024996 RLG00000026917
rosa_multiflora	Rmu_co8033776.1_g000001 Rmu_sc0001755.1_g000021 Rmu_sc0004267.1_g000002 Rmu_sc0006046.1_g000005
rosa_roxburghii	Rroxscaffold_4G00285170 Rroxscaffold_6G00419400
rosa_rugosa	Rorug01G0370100 Rorug03G0043300
rosa_samantha	Rh1AG378600 Rh1BG341900 Rh1CG355500 Rh1DG373000 Rh3AG101500 Rh3BG105500 Rh3CG107300 Rh3DG106900
rosa_wichuraiana	Rw1G033310 Rw3G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	466
AciI	CCGC	4 cut(s)	23, 39, 251, 514
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	235
AcvI	CACGTG	1 cut(s)	415
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	222, 283
AluBI	AGCT	2 cut(s)	113, 332
AluI	AGCT	2 cut(s)	113, 332
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	2 cut(s)	214, 269
AlwI	GGATC	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	113, 254, 487
ApoI	RAATTY	1 cut(s)	235
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspLEI	GCGC	1 cut(s)	128
AsuC2I	CCSGG	1 cut(s)	511
AsuII	TTCGAA	1 cut(s)	363
BbrPI	CACGTG	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	100, 241, 499
BccI	CCATC	3 cut(s)	362, 493, 545
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	214, 269
BisI	GCNGC	5 cut(s)	23, 114, 252, 255, 488
BlsI	GCNGC	5 cut(s)	24, 115, 253, 256, 489
Bme1390I	CCNGG	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	511
BmsI	GCATC	1 cut(s)	432
Bpu14I	TTCGAA	1 cut(s)	363
BpuEI	CTTGAG	3 cut(s)	38, 251, 503
BpuMI	CCSGG	1 cut(s)	511
Bsa29I	ATCGAT	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	258, 294, 403
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	258, 294, 403
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	100, 241, 499
BshVI	ATCGAT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	3 cut(s)	255, 312, 530
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	214, 269
BsmFI	GGGAC	3 cut(s)	255, 312, 530
Bso31I	GGTCTC	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	202, 308, 345
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	4 cut(s)	23, 39, 251, 514
BspDI	ATCGAT	1 cut(s)	426
BspPI	GGATC	1 cut(s)	316
BspT104I	TTCGAA	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	269
BssECI	CCNNGG	3 cut(s)	258, 294, 403
BssMI	GATC	3 cut(s)	202, 308, 345
BssT1I	CCWWGG	1 cut(s)	403
Bst4CI	ACNGT	1 cut(s)	303
BstBAI	YACGTR	1 cut(s)	415
BstBI	TTCGAA	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	143
BstDSI	CCRYGG	3 cut(s)	258, 294, 403
BstF5I	GGATG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	3 cut(s)	205, 311, 348
BstMAI	GTCTC	2 cut(s)	214, 269
BstMBI	GATC	3 cut(s)	202, 308, 345
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 169, 224, 493
BstSCI	CCNGG	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	100, 241, 499
Bsu15I	ATCGAT	1 cut(s)	426
BsuTUI	ATCGAT	1 cut(s)	426
BtgI	CCRYGG	3 cut(s)	258, 294, 403
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	128
ClaI	ATCGAT	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	4 cut(s)	97, 325, 404, 526
CviJI	RGCY	8 cut(s)	22, 113, 147, 254, 332, 408, 490, 503
CviKI_1	RGCY	8 cut(s)	22, 113, 147, 254, 332, 408, 490, 503
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	3 cut(s)	204, 310, 347
DpnII	GATC	3 cut(s)	202, 308, 345
Eco130I	CCWWGG	1 cut(s)	403
Eco31I	GGTCTC	1 cut(s)	269
Eco72I	CACGTG	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	4 cut(s)	100, 328, 407, 529
FaiI	YATR	8 cut(s)	71, 98, 179, 320, 326, 405, 527, 544
FaqI	GGGAC	3 cut(s)	255, 312, 530
FatI	CATG	4 cut(s)	96, 324, 403, 525
FauI	CCCGC	2 cut(s)	46, 507
FbaI	TGATCA	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	466
Fnu4HI	GCNGC	5 cut(s)	23, 114, 252, 255, 488
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	5 cut(s)	23, 114, 252, 255, 488
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	5 cut(s)	23, 114, 252, 255, 488
HapII	CCGG	1 cut(s)	511
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	100, 328, 407, 529
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	2 cut(s)	189, 315
HpaII	CCGG	1 cut(s)	511
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	2 cut(s)	186, 199
Hpy188III	TCNNGA	2 cut(s)	268, 312
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	1 cut(s)	303
HpyCH4IV	ACGT	3 cut(s)	244, 414, 445
HpyCH4V	TGCA	1 cut(s)	423
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 169, 224, 493
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	3 cut(s)	244, 414, 445
Hsp92II	CATG	4 cut(s)	100, 328, 407, 529
HspAI	GCGC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	202, 308, 345
LpnPI	CCDG	4 cut(s)	260, 297, 338, 524
Lsp1109I	GCAGC	3 cut(s)	100, 241, 499
LweI	GCATC	1 cut(s)	432
MaeII	ACGT	3 cut(s)	244, 414, 445
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	3 cut(s)	204, 310, 347
MboI	GATC	3 cut(s)	202, 308, 345
MboII	GAAGA	1 cut(s)	377
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	1 cut(s)	235
MnlI	CCTC	5 cut(s)	59, 158, 411, 460, 514
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	2 cut(s)	95, 323
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	511
MwoI	GCNNNNNNNGC	4 cut(s)	19, 169, 224, 493
NciI	CCSGG	1 cut(s)	511
NcoI	CCATGG	1 cut(s)	403
NdeII	GATC	3 cut(s)	202, 308, 345
NlaIII	CATG	4 cut(s)	100, 328, 407, 529
NspV	TTCGAA	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	189, 315
PkrI	GCNGC	5 cut(s)	24, 115, 253, 256, 489
PmaCI	CACGTG	1 cut(s)	415
PmlI	CACGTG	1 cut(s)	415
Ppu21I	YACGTR	1 cut(s)	415
PspCI	CACGTG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
RseI	CAYNNNNRTG	2 cut(s)	95, 323
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	5 cut(s)	23, 114, 252, 255, 488
Sau3AI	GATC	3 cut(s)	202, 308, 345
ScrFI	CCNGG	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	8 cut(s)	83, 115, 247, 334, 394, 417, 422, 448
SfaNI	GCATC	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	363
SmiMI	CAYNNNNRTG	2 cut(s)	95, 323
SmlI	CTYRAG	3 cut(s)	17, 266, 482
SmoI	CTYRAG	3 cut(s)	17, 266, 482
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	4 cut(s)	23, 39, 251, 514
StyD4I	CCNGG	1 cut(s)	509
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	1 cut(s)	303
TaiI	ACGT	3 cut(s)	247, 417, 448
TaqI	TCGA	3 cut(s)	87, 363, 426
TasI	AATT	1 cut(s)	235
TauI	GCSGC	2 cut(s)	25, 254
TfiI	GAWTC	2 cut(s)	189, 315
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseI	GCWGC	3 cut(s)	113, 254, 487
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	2 cut(s)	321, 350
XapI	RAATTY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.