Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003563

Physical Location & Seq

Genomic Coordinates Forward (+)

63029734 .. 63030939

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG355500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGAAGCCCAAATCCAAGCCATTTTGCATAAGCTCAACAAAAAAAGAAAAGGTACGAAGTTTTGAGACTACTTACTCAAAATTTTCTTCTTCATCATACCACTCATCAATGGTAAGCACTGTTCTTCATCACCACCGTCCACACCGCCTCCTCCTGGACCCAGGCCAGCCTGCCAATGAGAGCAGAACACATAATGGACCATACTCGAACGAAGCGAATTTCGACACCAACATGGTGATCATCCTAGCAGCTCTTCTCTGTGCCCTGATATGTGCATTAGGTCTAAACTCAATAGTGAGGTGTGCCCTCAGATGCAGCAGGAGGTTTTCTTTTGAGACCCCAGATGAGGCTGCAGCAAGGTTAGCAGCCACAGGGCTTAAGAAGAGCACATTGAGGCAGATACCCATTGTGTCATACGGGACTGGGGTGCTTAACATTCCTAGTGCCACTGACTGCCCAATTTGCCTTGGGGAATTTTCAGATGGGCAGAAAGTTAGGGTTTTGCCAAAGTGTAACCATGGGTTCCATGTGAGGTGCATAGACACATGGTTCTTGTCACATTCTTCTTGCCCAACTTGCAGGCAGTCATTGCTGGAACCACAACCACAAGGTTCAGATTCTTCAGAAGGACAGAATGATGTGGTGGTTGCTGTTGCTGGTGATGAGGCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

225

Amino Acids

24.59

Weight (kDa)

8.49

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	152 - 195	5.4e-15	Ring finger domain
zf-RING_11	PF17123	152 - 181	1.8e-12	RING-like zinc finger
zf-rbx1	PF12678	152 - 195	4.4e-07	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	153 - 194	7.5e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	153 - 194	2.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10910 AT5G01880
fragaria_vesca	FvH4_6g09940 FvH4_7g25880 FvH4_7g25880
malus_domestica	MD01G1167200.v1.1 MD04G1174300.v1.1 MD07G1233300.v1.1 MD12G1187900.v1.1
prunus_persica	Prupe.2G263800_v2.0.a1 Prupe.6G293100_v2.0.a1
pyrus_communis	pycom01g18030 pycom04g15370
rosa_chinensis	RchiOBHm_Chr1g0372171 RchiOBHm_Chr3g0460531
rosa_laevigata	RLG00000024996 RLG00000026917
rosa_multiflora	Rmu_co8033776.1_g000001 Rmu_sc0001755.1_g000021 Rmu_sc0004267.1_g000002 Rmu_sc0006046.1_g000005
rosa_roxburghii	Rroxscaffold_4G00285170 Rroxscaffold_6G00419400
rosa_rugosa	Rorug01G0370100 Rorug03G0043300
rosa_samantha	Rh1AG378600 Rh1BG341900 Rh1CG355500 Rh1DG373000 Rh3AG101500 Rh3BG105500 Rh3CG107300 Rh3DG106900
rosa_wichuraiana	Rw1G033310 Rw3G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	148
AcsI	RAATTY	3 cut(s)	83, 220, 476
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	157, 349
AflII	CTTAAG	1 cut(s)	380
AjnI	CCWGG	2 cut(s)	156, 163
AluBI	AGCT	2 cut(s)	36, 254
AluI	AGCT	2 cut(s)	36, 254
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	2 cut(s)	62, 332
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	5 cut(s)	251, 318, 353, 356, 368
ApoI	RAATTY	3 cut(s)	83, 220, 476
AspS9I	GGNCC	2 cut(s)	160, 200
AsuHPI	GGTGA	3 cut(s)	125, 250, 674
AvaII	GGWCC	2 cut(s)	160, 200
BaeGI	GKGCMC	2 cut(s)	268, 310
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	5 cut(s)	263, 330, 340, 368, 380
BccI	CCATC	1 cut(s)	479
BciT130I	CCWGG	2 cut(s)	158, 165
BclI	TGATCA	1 cut(s)	240
BcoDI	GTCTC	2 cut(s)	62, 332
BfaI	CTAG	2 cut(s)	248, 444
BfmI	CTRYAG	1 cut(s)	354
BfrI	CTTAAG	1 cut(s)	380
BisI	GCNGC	5 cut(s)	252, 319, 354, 357, 369
BlsI	GCNGC	5 cut(s)	253, 320, 355, 358, 370
Bme1390I	CCNGG	2 cut(s)	158, 165
Bme18I	GGWCC	2 cut(s)	160, 200
BmgT120I	GGNCC	2 cut(s)	160, 200
BmiI	GGNNCC	3 cut(s)	162, 527, 600
BmrFI	CCNGG	2 cut(s)	158, 165
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	305
BmuI	ACTGGG	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	163, 469, 520
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 349
Bse1I	ACTGG	1 cut(s)	430
Bse3DI	GCAATG	1 cut(s)	590
BseBI	CCWGG	2 cut(s)	158, 165
BseDI	CCNNGG	3 cut(s)	163, 469, 520
BseGI	GGATG	1 cut(s)	243
BseLI	CCNNNNNNNGG	2 cut(s)	157, 349
BseMI	GCAATG	1 cut(s)	590
BseMII	CTCAG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	2 cut(s)	268, 310
BseXI	GCAGC	5 cut(s)	263, 330, 340, 368, 380
BshFI	GGCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	157, 349
BsmAI	GTCTC	2 cut(s)	62, 332
BsmFI	GGGAC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	168
Bso31I	GGTCTC	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	268, 310, 392
Bsp143I	GATC	1 cut(s)	240
Bsp19I	CCATGG	1 cut(s)	520
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	324
BspLI	GGNNCC	3 cut(s)	162, 527, 600
BspMAI	CTGCAG	1 cut(s)	358
BspQI	GCTCTTC	2 cut(s)	261, 380
BspTI	CTTAAG	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	590
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	163, 469, 520
BssMI	GATC	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	469, 520
Bst2UI	CCWGG	2 cut(s)	158, 165
Bst4CI	ACNGT	2 cut(s)	124, 140
Bst6I	CTCTTC	2 cut(s)	261, 380
BstAFI	CTTAAG	1 cut(s)	380
BstAPI	GCANNNNNTGC	1 cut(s)	592
BstC8I	GCNNGC	3 cut(s)	170, 174, 584
BstDEI	CTNAG	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	1 cut(s)	243
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	2 cut(s)	62, 332
BstMBI	GATC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 465, 579, 592
BstNI	CCWGG	2 cut(s)	158, 165
BstSCI	CCNGG	2 cut(s)	156, 163
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	2 cut(s)	268, 310
BstV1I	GCAGC	5 cut(s)	263, 330, 340, 368, 380
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	120, 450
Cac8I	GCNNGC	3 cut(s)	170, 174, 584
Cfr13I	GGNCC	2 cut(s)	160, 200
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	4 cut(s)	235, 521, 530, 549
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	261, 380
EarI	CTCTTC	2 cut(s)	261, 380
Eco130I	CCWWGG	2 cut(s)	469, 520
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	160, 200
Eco57I	CTGAAG	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	156, 163
EcoT14I	CCWWGG	2 cut(s)	469, 520
ErhI	CCWWGG	2 cut(s)	469, 520
FaeI	CATG	4 cut(s)	238, 524, 533, 552
FaqI	GGGAC	1 cut(s)	436
FatI	CATG	4 cut(s)	234, 520, 529, 548
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	5 cut(s)	252, 319, 354, 357, 369
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	5 cut(s)	252, 319, 354, 357, 369
FspBI	CTAG	2 cut(s)	248, 444
GluI	GCNGC	5 cut(s)	252, 319, 354, 357, 369
HaeIII	GGCC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	238, 524, 533, 552
HinfI	GANTC	1 cut(s)	620
HphI	GGTGA	3 cut(s)	125, 250, 674
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188I	TCNGA	4 cut(s)	314, 484, 619, 628
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	2 cut(s)	124, 140
HpyCH4V	TGCA	6 cut(s)	30, 278, 318, 356, 540, 582
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 465, 579, 592
HpyF3I	CTNAG	1 cut(s)	311
Hsp92II	CATG	4 cut(s)	238, 524, 533, 552
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	240
LguI	GCTCTTC	2 cut(s)	261, 380
Lsp1109I	GCAGC	5 cut(s)	263, 330, 340, 368, 380
LweI	GCATC	1 cut(s)	305
MaeI	CTAG	2 cut(s)	248, 444
MaeIII	GTNAC	2 cut(s)	515, 558
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	7 cut(s)	81, 84, 119, 248, 397, 558, 615
MhlI	GDGCHC	3 cut(s)	268, 310, 392
MluCI	AATT	5 cut(s)	83, 220, 462, 476, 673
MnlI	CCTC	9 cut(s)	161, 164, 294, 318, 320, 343, 390, 528, 661
MseI	TTAA	2 cut(s)	381, 435
MslI	CAYNNNNRTG	1 cut(s)	233
MspCI	CTTAAG	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	158, 165
MvaI	CCWGG	2 cut(s)	158, 165
MwoI	GCNNNNNNNGC	4 cut(s)	365, 465, 579, 592
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	4 cut(s)	238, 524, 533, 552
NlaIV	GGNNCC	3 cut(s)	162, 527, 600
NmuCI	GTSAC	1 cut(s)	558
PciSI	GCTCTTC	2 cut(s)	261, 380
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	620
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	5 cut(s)	253, 320, 355, 358, 370
Psp6I	CCWGG	2 cut(s)	156, 163
PspGI	CCWGG	2 cut(s)	156, 163
PspN4I	GGNNCC	3 cut(s)	162, 527, 600
PspPI	GGNCC	2 cut(s)	160, 200
PsrI	GAACNNNNNNTAC	2 cut(s)	108, 140
PstI	CTGCAG	1 cut(s)	358
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	233
SapI	GCTCTTC	2 cut(s)	261, 380
SaqAI	TTAA	2 cut(s)	381, 435
SatI	GCNGC	5 cut(s)	252, 319, 354, 357, 369
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	2 cut(s)	160, 200
ScrFI	CCNGG	2 cut(s)	158, 165
SduI	GDGCHC	3 cut(s)	268, 310, 392
SetI	ASST	9 cut(s)	38, 57, 256, 286, 305, 329, 365, 539, 616
SfaNI	GCATC	1 cut(s)	305
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	2 cut(s)	160, 200
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	5 cut(s)	83, 220, 462, 476, 673
SsiI	CCGC	1 cut(s)	148
SspMI	CTAG	2 cut(s)	248, 444
StyD4I	CCNGG	2 cut(s)	156, 163
StyI	CCWWGG	2 cut(s)	469, 520
TaaI	ACNGT	2 cut(s)	124, 140
TaqI	TCGA	2 cut(s)	209, 225
TasI	AATT	5 cut(s)	83, 220, 462, 476, 673
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	2 cut(s)	381, 435
Tru9I	TTAA	2 cut(s)	381, 435
TscAI	CASTG	2 cut(s)	127, 457
TseFI	GTSAC	1 cut(s)	558
TseI	GCWGC	5 cut(s)	251, 318, 353, 356, 368
Tsp45I	GTSAC	1 cut(s)	558
TspDTI	ATGAA	2 cut(s)	84, 119
TspRI	CASTG	2 cut(s)	127, 457
Vha464I	CTTAAG	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	160, 200
XapI	RAATTY	3 cut(s)	83, 220, 476
XspI	CTAG	2 cut(s)	248, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.