Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003563

Physical Location & Seq

Genomic Coordinates Forward (+)

26956294 .. 26958685

Gene Structure 2392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G293100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCATCGACATCTACTCGGCACAGAGCCAAATACGGCGCCGTCCTTTGGGAACAGGACAGCAGATTCATACATTAGCGAGGCCAACTTTGACTCCAACATGGTGATCATATTGGCAGCCCTGTTATGTGCTCTGATATGTGCACTTGGGCTCAACTCAATTGTCCGCTGTGCCCTGCGCTGCAGCTACAGGTTTGCTTTGGAGACGCCGGAACAAGCAGCTGCAAGGTTGGCAGCCACAGGCCTGAAGAAGAGCCATTTGCGCCAGATCCCAATTGCTGTTTATGGCTCCGGCGTGGAAATTCCGGCCACAGAATGCCCAATTTGCCTTGGAGAGTTTGAAGATGGAGAAAAAGTCAGGGTGCTGCCAGAATGCAATCACGGATTTCATGTGAGGTGCATAGATACATGGCTTTTGTCCCACTCGTCCTGCCCAAACTGTCGACATTCACTGCTTGAACTGCACCATCCCAAAAAGAGTACCAGGACTAATAGTCCCAGTACTGCTGATGCAAGCCAAAATCAAGAAGCTGCTGCTGTTGCTGCAGCAGAGCCATCAAATTCAACCAATGAGCCCAACCAGCAAGGCAGAGTTGTCATAGTCATTGAGCAGGCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

207

Amino Acids

22.24

Weight (kDa)

6.29

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10910 AT5G01880
fragaria_vesca	FvH4_6g09940 FvH4_7g25880 FvH4_7g25880
malus_domestica	MD01G1167200.v1.1 MD04G1174300.v1.1 MD07G1233300.v1.1 MD12G1187900.v1.1
prunus_persica	Prupe.2G263800_v2.0.a1 Prupe.6G293100_v2.0.a1
pyrus_communis	pycom01g18030 pycom04g15370
rosa_chinensis	RchiOBHm_Chr1g0372171 RchiOBHm_Chr3g0460531
rosa_laevigata	RLG00000024996 RLG00000026917
rosa_multiflora	Rmu_co8033776.1_g000001 Rmu_sc0001755.1_g000021 Rmu_sc0004267.1_g000002 Rmu_sc0006046.1_g000005
rosa_roxburghii	Rroxscaffold_4G00285170 Rroxscaffold_6G00419400
rosa_rugosa	Rorug01G0370100 Rorug03G0043300
rosa_samantha	Rh1AG378600 Rh1BG341900 Rh1CG355500 Rh1DG373000 Rh3AG101500 Rh3BG105500 Rh3CG107300 Rh3DG106900
rosa_wichuraiana	Rw1G033310 Rw3G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	442
AciI	CCGC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	300, 559
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	2 cut(s)	38, 206
AfaI	GTAC	2 cut(s)	481, 502
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	341, 458, 564
AhdI	GACNNNNNGTC	1 cut(s)	492
AjnI	CCWGG	1 cut(s)	482
AluBI	AGCT	3 cut(s)	186, 221, 530
AluI	AGCT	3 cut(s)	186, 221, 530
Alw21I	GWGCWC	2 cut(s)	133, 145
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	3 cut(s)	81, 241, 306
ApaLI	GTGCAC	1 cut(s)	141
ApoI	RAATTY	2 cut(s)	300, 559
AspLEI	GCGC	3 cut(s)	40, 180, 264
AsuHPI	GGTGA	1 cut(s)	115
BaeGI	GKGCMC	2 cut(s)	145, 175
BanI	GGYRCC	1 cut(s)	37
BanII	GRGCYC	2 cut(s)	153, 576
Bbv12I	GWGCWC	2 cut(s)	133, 145
BccI	CCATC	3 cut(s)	338, 474, 562
BceAI	ACGGC	2 cut(s)	25, 51
BciT130I	CCWGG	1 cut(s)	484
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	197
BfmI	CTRYAG	3 cut(s)	181, 187, 543
BfoI	RGCGCY	1 cut(s)	41
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	1 cut(s)	484
BmeRI	GACNNNNNGTC	1 cut(s)	492
BmiI	GGNNCC	2 cut(s)	39, 289
BmrFI	CCNGG	1 cut(s)	484
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	13, 499
BmuI	ACTGGG	1 cut(s)	492
BsaHI	GRCGYC	2 cut(s)	38, 206
BsaJI	CCNNGG	1 cut(s)	328
BsaXI	ACNNNNNCTCC	4 cut(s)	77, 107, 339, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	498
BseSI	GKGCMC	2 cut(s)	145, 175
BsgI	GTGCAG	1 cut(s)	446
BshFI	GGCC	3 cut(s)	83, 243, 308
BshNI	GGYRCC	1 cut(s)	37
BsiHKAI	GWGCWC	2 cut(s)	133, 145
BsiSI	CCGG	3 cut(s)	209, 291, 305
BslFI	GGGAC	2 cut(s)	403, 480
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	1 cut(s)	197
BsmBI	CGTCTC	1 cut(s)	197
BsmFI	GGGAC	2 cut(s)	403, 480
BsmI	GAATGC	2 cut(s)	320, 377
BsnI	GGCC	3 cut(s)	83, 243, 308
Bsp1286I	GDGCHC	5 cut(s)	133, 145, 153, 175, 576
Bsp143I	GATC	2 cut(s)	105, 267
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	3 cut(s)	83, 243, 308
BspLI	GGNNCC	2 cut(s)	39, 289
BspMAI	CTGCAG	2 cut(s)	185, 547
BspPI	GGATC	1 cut(s)	262
BspQI	GCTCTTC	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	105, 267
BssNI	GRCGYC	2 cut(s)	38, 206
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	484
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	1 cut(s)	245
BstACI	GRCGYC	2 cut(s)	38, 206
BstC8I	GCNNGC	2 cut(s)	514, 612
BstF5I	GGATG	1 cut(s)	466
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	3 cut(s)	40, 180, 264
BstKTI	GATC	2 cut(s)	108, 270
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	105, 267
BstMWI	GCNNNNNNNGC	7 cut(s)	230, 261, 324, 460, 539, 542, 580
BstNI	CCWGG	1 cut(s)	484
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	3 cut(s)	181, 187, 543
BstSLI	GKGCMC	2 cut(s)	145, 175
BstX2I	RGATCY	1 cut(s)	267
BstYI	RGATCY	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	83, 243, 308
BtsCI	GGATG	1 cut(s)	466
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	449
Cac8I	GCNNGC	2 cut(s)	514, 612
CfoI	GCGC	3 cut(s)	40, 180, 264
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	480, 501
CviAII	CATG	3 cut(s)	100, 389, 408
CviQI	GTAC	2 cut(s)	480, 501
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	2 cut(s)	107, 269
DpnII	GATC	2 cut(s)	105, 267
DriI	GACNNNNNGTC	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	245
Eam1105I	GACNNNNNGTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	328
Eco147I	AGGCCT	1 cut(s)	243
Eco24I	GRGCYC	2 cut(s)	153, 576
Eco57I	CTGAAG	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	328
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	153, 576
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	3 cut(s)	103, 392, 411
FaqI	GGGAC	2 cut(s)	403, 480
FatI	CATG	3 cut(s)	99, 388, 407
FbaI	TGATCA	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	442
FokI	GGATG	1 cut(s)	453
FriOI	GRGCYC	2 cut(s)	153, 576
GlaI	GCGC	3 cut(s)	39, 179, 263
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	83, 243, 308
HapII	CCGG	3 cut(s)	209, 291, 305
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	3 cut(s)	40, 180, 264
Hin1I	GRCGYC	2 cut(s)	38, 206
Hin1II	CATG	3 cut(s)	103, 392, 411
Hin6I	GCGC	3 cut(s)	38, 178, 262
HinP1I	GCGC	3 cut(s)	38, 178, 262
HincII	GTYRAC	1 cut(s)	443
HindII	GTYRAC	1 cut(s)	443
HinfI	GANTC	2 cut(s)	65, 92
HpaII	CCGG	3 cut(s)	209, 291, 305
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	143, 443
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	2 cut(s)	143, 443
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	9 cut(s)	4, 143, 183, 224, 375, 399, 463, 512, 545
HpyF10VI	GCNNNNNNNGC	7 cut(s)	230, 261, 324, 460, 539, 542, 580
Hsp92I	GRCGYC	2 cut(s)	38, 206
Hsp92II	CATG	3 cut(s)	103, 392, 411
HspAI	GCGC	3 cut(s)	38, 178, 262
KasI	GGCGCC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	105, 267
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	293
LweI	GCATC	2 cut(s)	13, 499
MalI	GATC	2 cut(s)	107, 269
MboI	GATC	2 cut(s)	105, 267
MboII	GAAGA	3 cut(s)	259, 262, 353
MfeI	CAATTG	2 cut(s)	159, 273
MflI	RGATCY	1 cut(s)	267
MhlI	GDGCHC	5 cut(s)	133, 145, 153, 175, 576
MluCI	AATT	5 cut(s)	159, 273, 300, 321, 559
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	2 cut(s)	73, 387
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	619
MspA1I	CMGCKG	2 cut(s)	168, 221
MspI	CCGG	3 cut(s)	209, 291, 305
MspR9I	CCNGG	1 cut(s)	484
MunI	CAATTG	2 cut(s)	159, 273
Mva1269I	GAATGC	2 cut(s)	320, 377
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	7 cut(s)	230, 261, 324, 460, 539, 542, 580
NarI	GGCGCC	1 cut(s)	38
NdeII	GATC	2 cut(s)	105, 267
NlaIII	CATG	3 cut(s)	103, 392, 411
NlaIV	GGNNCC	2 cut(s)	39, 289
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	245
PctI	GAATGC	2 cut(s)	320, 377
PfeI	GAWTC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	86
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	482
PspN4I	GGNNCC	2 cut(s)	39, 289
PstI	CTGCAG	2 cut(s)	185, 547
PsuI	RGATCY	1 cut(s)	267
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	2 cut(s)	481, 502
RsaNI	GTAC	2 cut(s)	480, 501
SalI	GTCGAC	1 cut(s)	441
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	619
Sau3AI	GATC	2 cut(s)	105, 267
ScaI	AGTACT	1 cut(s)	502
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	5 cut(s)	133, 145, 153, 175, 576
SetI	ASST	6 cut(s)	188, 194, 223, 230, 398, 532
SfaNI	GCATC	2 cut(s)	13, 499
SfcI	CTRYAG	3 cut(s)	181, 187, 543
SfoI	GGCGCC	1 cut(s)	39
Sse9I	AATT	5 cut(s)	159, 273, 300, 321, 559
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	166
SspDI	GGCGCC	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	482
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	7, 442
TasI	AATT	5 cut(s)	159, 273, 300, 321, 559
TatI	WGTACW	1 cut(s)	500
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	619
Tru9I	TTAA	1 cut(s)	619
TscAI	CASTG	1 cut(s)	456
TspDTI	ATGAA	2 cut(s)	57, 377
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	1 cut(s)	456
VneI	GTGCAC	1 cut(s)	141
XapI	RAATTY	2 cut(s)	300, 559
XmiI	GTMKAC	1 cut(s)	442
ZrmI	AGTACT	1 cut(s)	502
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.