Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003563

Physical Location & Seq

Genomic Coordinates Forward (+)

30715852 .. 30716502

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1233300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCATCTCTTCATCACCACCGTCCACACCGCCTACTTCTAGAACCAATATCAACGACACCAGCATCACCAGCCAGCGGAAGCAGGACACGTGGCAATCACGCCAATGAATCCAATGGGAGCGGGACACGTGGTGCGTACGCCAATGAAGCCAATTTTGACAGCAACATGGTCATCATCCTGGCAGCCTTGCTGTGCGCTCTGATATTTGCATTGGGACTAAACTCAATAGTCCGGTGTGCGCTGAGATGCAGCAGAAGGTTCTCTCCTGAGACACCAGACGAGACGGCGGCGCGGTTGGCGGTCACCGGGCTTAAAAAAAGCATATTGCGTCGGATTCCCATCGTGATATATGGGACTGGACTAAATATAGCTGCCACGGATTGTCCAATTTGCCTTGGAGAATTTATGGACGGGCAGAAAGTGAGGCTGCTGCCGAAATGCAACCACGGATTTCATGCCAGGTGCATTGACACATGGTTTTTGTCACATTCGTCGTGCCCGACTTGCCGCCATTCGTTGCTTGAGCCGCCGGCTGCGGGCAGTTCGGATTCGGCCGAAAATGTTGGTGACGGTGGTGCTAGACATGCTGGAAATGTATCCTCAGGTGGACAAGGTGATGTGGCAGTCTCTGTTGATGAGGCTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

217

Amino Acids

22.72

Weight (kDa)

8.13

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	128 - 171	1e-14	Ring finger domain
zf-RING_11	PF17123	128 - 157	5.1e-12	RING-like zinc finger
zf-C3HC4_2	PF13923	129 - 170	9.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	129 - 170	1.5e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	142 - 171	5.6e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003563)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10910 AT5G01880
fragaria_vesca	FvH4_6g09940 FvH4_7g25880 FvH4_7g25880
malus_domestica	MD01G1167200.v1.1 MD04G1174300.v1.1 MD07G1233300.v1.1 MD12G1187900.v1.1
prunus_persica	Prupe.2G263800_v2.0.a1 Prupe.6G293100_v2.0.a1
pyrus_communis	pycom01g18030 pycom04g15370
rosa_chinensis	RchiOBHm_Chr1g0372171 RchiOBHm_Chr3g0460531
rosa_laevigata	RLG00000024996 RLG00000026917
rosa_multiflora	Rmu_co8033776.1_g000001 Rmu_sc0001755.1_g000021 Rmu_sc0004267.1_g000002 Rmu_sc0006046.1_g000005
rosa_roxburghii	Rroxscaffold_4G00285170 Rroxscaffold_6G00419400
rosa_rugosa	Rorug01G0370100 Rorug03G0043300
rosa_samantha	Rh1AG378600 Rh1BG341900 Rh1CG355500 Rh1DG373000 Rh3AG101500 Rh3BG105500 Rh3CG107300 Rh3DG106900
rosa_wichuraiana	Rw1G033310 Rw3G008640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	123
AccII	CGCG	1 cut(s)	295
AciI	CCGC	9 cut(s)	31, 78, 123, 290, 295, 302, 511, 530, 539
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	404
AcvI	CACGTG	2 cut(s)	92, 131
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	77, 539
AflIII	ACRYGT	2 cut(s)	89, 128
AjnI	CCWGG	2 cut(s)	180, 461
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	3 cut(s)	266, 278, 634
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	1 cut(s)	555
ApeKI	GCWGC	6 cut(s)	185, 252, 374, 430, 433, 536
ApoI	RAATTY	1 cut(s)	404
AspLEI	GCGC	3 cut(s)	200, 244, 295
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	5 cut(s)	8, 60, 298, 581, 629
AxyI	CCTNAGG	1 cut(s)	604
BaeGI	GKGCMC	1 cut(s)	503
BbrPI	CACGTG	2 cut(s)	92, 131
BbvI	GCAGC	6 cut(s)	197, 264, 361, 417, 420, 523
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	2 cut(s)	182, 463
BciVI	GTATCC	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	3 cut(s)	266, 278, 634
BfaI	CTAG	3 cut(s)	41, 582, 649
BfuI	GTATCC	1 cut(s)	610
BisI	GCNGC	9 cut(s)	186, 253, 291, 375, 431, 434, 511, 530, 537
BlsI	GCNGC	9 cut(s)	187, 254, 292, 376, 432, 435, 512, 531, 538
Bme1390I	CCNGG	3 cut(s)	182, 310, 463
BmrFI	CCNGG	3 cut(s)	182, 310, 463
BmsI	GCATC	3 cut(s)	14, 74, 239
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	1 cut(s)	310
BsaAI	YACGTR	2 cut(s)	92, 131
BsaBI	GATNNNNATC	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	378, 397, 448
BsaWI	WCCGGW	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 539
Bse118I	RCCGGY	1 cut(s)	532
Bse1I	ACTGG	1 cut(s)	364
Bse21I	CCTNAGG	1 cut(s)	604
Bse8I	GATNNNNATC	1 cut(s)	341
BseBI	CCWGG	2 cut(s)	182, 463
BseDI	CCNNGG	3 cut(s)	378, 397, 448
BseGI	GGATG	1 cut(s)	177
BseJI	GATNNNNATC	1 cut(s)	341
BseLI	CCNNNNNNNGG	2 cut(s)	77, 539
BseMII	CTCAG	3 cut(s)	236, 261, 618
BseNI	ACTGG	1 cut(s)	364
BseSI	GKGCMC	1 cut(s)	503
BseX3I	CGGCCG	1 cut(s)	555
BseXI	GCAGC	6 cut(s)	197, 264, 361, 417, 420, 523
Bsh1236I	CGCG	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	1 cut(s)	557
BsiEI	CGRYCG	1 cut(s)	558
BsiSI	CCGG	3 cut(s)	235, 309, 533
BsiWI	CGTACG	1 cut(s)	138
BslFI	GGGAC	3 cut(s)	139, 231, 370
BslI	CCNNNNNNNGG	2 cut(s)	77, 539
BsmAI	GTCTC	3 cut(s)	266, 278, 634
BsmBI	CGTCTC	1 cut(s)	278
BsmFI	GGGAC	3 cut(s)	139, 231, 370
BsnI	GGCC	1 cut(s)	557
Bsp1286I	GDGCHC	1 cut(s)	503
BspACI	CCGC	9 cut(s)	31, 78, 123, 290, 295, 302, 511, 530, 539
BspANI	GGCC	1 cut(s)	557
BspCNI	CTCAG	3 cut(s)	237, 262, 617
BspFNI	CGCG	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	532
BssECI	CCNNGG	3 cut(s)	378, 397, 448
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	182, 463
Bst4CI	ACNGT	2 cut(s)	23, 575
Bst6I	CTCTTC	1 cut(s)	15
BstBAI	YACGTR	2 cut(s)	92, 131
BstC8I	GCNNGC	4 cut(s)	76, 534, 541, 646
BstDEI	CTNAG	3 cut(s)	245, 270, 604
BstDSI	CCRYGG	2 cut(s)	378, 448
BstEII	GGTNACC	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	3 cut(s)	200, 244, 295
BstMAI	GTCTC	3 cut(s)	266, 278, 634
BstMCI	CGRYCG	1 cut(s)	558
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 149, 299, 507, 529, 587
BstNI	CCWGG	2 cut(s)	182, 463
BstNSI	RCATGY	1 cut(s)	590
BstPI	GGTNACC	1 cut(s)	304
BstSCI	CCNGG	3 cut(s)	180, 308, 461
BstSLI	GKGCMC	1 cut(s)	503
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	6 cut(s)	197, 264, 361, 417, 420, 523
BstZI	CGGCCG	1 cut(s)	555
Bsu36I	CCTNAGG	1 cut(s)	604
BsuI	GTATCC	1 cut(s)	610
BsuRI	GGCC	1 cut(s)	557
BtgI	CCRYGG	2 cut(s)	378, 448
BtsCI	GGATG	1 cut(s)	177
Cac8I	GCNNGC	4 cut(s)	76, 534, 541, 646
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	3 cut(s)	200, 244, 295
Cfr10I	RCCGGY	1 cut(s)	532
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	4 cut(s)	169, 458, 477, 587
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	3 cut(s)	245, 270, 604
DraIII	CACNNNGTG	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	555
EagI	CGGCCG	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EclXI	CGGCCG	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	555
Eco72I	CACGTG	2 cut(s)	92, 131
Eco81I	CCTNAGG	1 cut(s)	604
Eco91I	GGTNACC	1 cut(s)	304
EcoO65I	GGTNACC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	180, 461
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	4 cut(s)	172, 461, 480, 590
FaiI	YATR	9 cut(s)	170, 326, 352, 354, 371, 410, 459, 478, 588
FaqI	GGGAC	3 cut(s)	139, 231, 370
FatI	CATG	4 cut(s)	168, 457, 476, 586
FauI	CCCGC	2 cut(s)	116, 532
Fnu4HI	GCNGC	9 cut(s)	186, 253, 291, 375, 431, 434, 511, 530, 537
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	9 cut(s)	186, 253, 291, 375, 431, 434, 511, 530, 537
FspBI	CTAG	3 cut(s)	41, 582, 649
GlaI	GCGC	3 cut(s)	199, 243, 294
GluI	GCNGC	9 cut(s)	186, 253, 291, 375, 431, 434, 511, 530, 537
HaeIII	GGCC	1 cut(s)	557
HapII	CCGG	3 cut(s)	235, 309, 533
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	3 cut(s)	200, 244, 295
Hin1II	CATG	4 cut(s)	172, 461, 480, 590
Hin6I	GCGC	3 cut(s)	198, 242, 293
HinP1I	GCGC	3 cut(s)	198, 242, 293
HinfI	GANTC	3 cut(s)	110, 337, 551
HpaII	CCGG	3 cut(s)	235, 309, 533
HphI	GGTGA	5 cut(s)	8, 60, 298, 581, 629
Hpy166II	GTNNAC	2 cut(s)	26, 611
Hpy188I	TCNGA	3 cut(s)	204, 336, 550
Hpy188III	TCNNGA	3 cut(s)	41, 269, 346
Hpy8I	GTNNAC	2 cut(s)	26, 611
Hpy99I	CGWCG	2 cut(s)	336, 499
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	23, 575
HpyCH4IV	ACGT	2 cut(s)	91, 130
HpyCH4V	TGCA	4 cut(s)	212, 252, 444, 468
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 149, 299, 507, 529, 587
HpyF3I	CTNAG	3 cut(s)	245, 270, 604
HpySE526I	ACGT	2 cut(s)	91, 130
Hsp92II	CATG	4 cut(s)	172, 461, 480, 590
HspAI	GCGC	3 cut(s)	198, 242, 293
KroI	GCCGGC	1 cut(s)	532
KroNI	GCCGGC	1 cut(s)	534
LmnI	GCTCC	1 cut(s)	120
Lsp1109I	GCAGC	6 cut(s)	197, 264, 361, 417, 420, 523
LweI	GCATC	3 cut(s)	14, 74, 239
MaeI	CTAG	3 cut(s)	41, 582, 649
MaeII	ACGT	2 cut(s)	91, 130
MaeIII	GTNAC	3 cut(s)	304, 486, 569
MbiI	CCGCTC	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	503
MluCI	AATT	3 cut(s)	154, 390, 404
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	3 cut(s)	420, 613, 634
MroNI	GCCGGC	1 cut(s)	532
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	3 cut(s)	235, 309, 533
MspR9I	CCNGG	3 cut(s)	182, 310, 463
MvaI	CCWGG	2 cut(s)	182, 463
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	6 cut(s)	71, 149, 299, 507, 529, 587
NaeI	GCCGGC	1 cut(s)	534
NciI	CCSGG	1 cut(s)	310
NgoMIV	GCCGGC	1 cut(s)	532
NlaIII	CATG	4 cut(s)	172, 461, 480, 590
NmuCI	GTSAC	3 cut(s)	304, 486, 569
NspI	RCATGY	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	500
PdiI	GCCGGC	1 cut(s)	534
PfeI	GAWTC	3 cut(s)	110, 337, 551
Pfl23II	CGTACG	1 cut(s)	138
PkrI	GCNGC	9 cut(s)	187, 254, 292, 376, 432, 435, 512, 531, 538
PmaCI	CACGTG	2 cut(s)	92, 131
PmlI	CACGTG	2 cut(s)	92, 131
Ppu21I	YACGTR	2 cut(s)	92, 131
Psp6I	CCWGG	2 cut(s)	180, 461
PspCI	CACGTG	2 cut(s)	92, 131
PspEI	GGTNACC	1 cut(s)	304
PspGI	CCWGG	2 cut(s)	180, 461
PspLI	CGTACG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	632
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	9 cut(s)	186, 253, 291, 375, 431, 434, 511, 530, 537
ScrFI	CCNGG	3 cut(s)	182, 310, 463
SduI	GDGCHC	1 cut(s)	503
SetI	ASST	7 cut(s)	94, 133, 263, 376, 467, 610, 619
SfaNI	GCATC	3 cut(s)	14, 74, 239
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	3 cut(s)	154, 390, 404
SsiI	CCGC	9 cut(s)	31, 78, 123, 290, 295, 302, 511, 530, 539
SspMI	CTAG	3 cut(s)	41, 582, 649
StyD4I	CCNGG	3 cut(s)	180, 308, 461
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	2 cut(s)	23, 575
TaiI	ACGT	2 cut(s)	94, 133
TasI	AATT	3 cut(s)	154, 390, 404
TauI	GCSGC	3 cut(s)	293, 513, 532
TfiI	GAWTC	3 cut(s)	110, 337, 551
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseFI	GTSAC	3 cut(s)	304, 486, 569
TseI	GCWGC	6 cut(s)	185, 252, 374, 430, 433, 536
Tsp45I	GTSAC	3 cut(s)	304, 486, 569
TspDTI	ATGAA	3 cut(s)	123, 162, 446
TspGWI	ACGGA	2 cut(s)	395, 465
XapI	RAATTY	1 cut(s)	404
XbaI	TCTAGA	1 cut(s)	40
XceI	RCATGY	1 cut(s)	590
XspI	CTAG	3 cut(s)	41, 582, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.